Job Description A2A4P0 Confidence 99.76% Date Wed Jul 10 14:06:11 BST 2013 Rank 39 Aligned Residues 333 % Identity 15% Template c1hv8B_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669; PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii Resolution 3.00 Å

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		567	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.		.	.	.	610	.	.	.	.	.	.	.	.	.	620			.	.	.
Predicted Secondary structure																																										.															.	.
Query SS confidence																																										.															.	.
Query Sequence		F	G	G	N	K	A	S	Y	G	K	K	T	Q	M	S	I	L	E	Q	R	E	S	L	P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	.	I	L	I	V	I	G	E	T	G	S	G	K	T	T	.	.	Q	I	T
Query Conservation																																										.															.	.
Alig confidence																																										.															.	.
Template Conservation
Template Sequence		Y	X	N	F	N	E	L	N	L	S	D	N	I	L	N	A	I	R	N	K	G	F	E	K	P	T	D	I	Q	X	K	V	I	P	L	F	L	N	D	E	Y	N	I	V	A	Q	A	R	T	G	S	G	K	T	A	S	F	A	I	P
Template Known Secondary structure			S	S	G	G	G	S	S													T			S															T		S								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		624	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.				.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.		.	.	.	.
Predicted Secondary structure																																				.	.	.																			.
Query SS confidence																																				.	.	.																			.
Query Sequence		Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	.	.	.	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	C	.	T	S	P	E
Query Conservation																																				.	.	.																			.
Alig confidence		.																																		.	.	.																			.
Template Conservation		.
Template Sequence		.	L	I	E	L	V	N	E	N	N	G	I	E	A	I	I	L	T	P	T	R	E	L	A	I	Q	V	A	D	E	I	E	S	L	K	G	N	K	N	L	K	I	A	K	I	Y	G	G	K	A	I	Y	P	Q	I	K	A	L	K	N
Template Known Secondary structure		.					S		S	S	S	S								S																		S	S									T	T	S											T
Template Predicted Secondary structure		.
Template SS confidence
			65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	N	I	V	V	G	T	P	G	R	I	L	D	H	I	N	R	G	T	L	N	L	K	N	V	K	Y	F	I	L	D	E	A	D	E	X	L	N	X	G	F	I	K	D	V	E	K	I	L	N	A	C	N	K	D	K	R	I	L	L
Template Known Secondary structure			S															T	T	S	S		G	G	G								T						T	T	T	T										T	S		S	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		740	.	.	.	.	.			.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		T	S	A	T	L	D	.	.	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P
Query Conservation								.	.
Alig confidence								.	.																																											.	.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence		F	S	A	T	X	P	R	E	I	L	N	L	A	K	K	Y	X	G	D	Y	S	F	I	K	A	K	I	N	A	N	I	E	Q	S	Y	V	E	V	N	E	N	E	R	F	E	A	L	C	R	L	.	.	.	.	.	L	K	N	K	E
Template Known Secondary structure				S	S															S								S	T	T	T	S									G	G	G									.	.	.	.	.			S	T	T
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.						.	.	.	.	.
		798	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.
Template Sequence		F	Y	G	L	V	F	C	K	T	K	R	D	T	K	E	L	A	S	X	L	.	.	.	.	.	.	.	.	.	R	D	I	G	F	K	A	G	A	I	H	G	D	L	S	Q	S	Q	R	E	K	V	I	R	L	F	K	Q	K	K	I
Template Known Secondary structure									S	S												.	.	.	.	.	.	.	.	.	T	T	T	T								S	S	S															T	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.										.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		858	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	L	I	A	T	D	V	X	S	R	G	I	D	V	N	D	L	N	C	V	I	N	Y	H	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	N	P	E	S	Y	X	H	R	I	G	R	T	G	R
Template Known Secondary structure		S						T	T								S			S					S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S								S	T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.																			.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		918		.	920	.	.	.	.	.	.	.	.	.	930	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		T	.	G	P	G	K	C	Y	R	L	Y	T	E	R	A	Y
Query Conservation			.
Alig confidence			.
Template Conservation
Template Sequence		A	G	K	K	G	K	A	I	S	I	I	N	R	R	E	Y
Template Known Secondary structure		T	T	S										S	T	T
Template Predicted Secondary structure
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D