Job Description A2A4P0 Confidence 99.85% Date Wed Jul 10 14:06:11 BST 2013 Rank 35 Aligned Residues 299 % Identity 17% Template c1gm5A_ PDB info PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction Resolution 3.24 Å

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		582	.	.	.	.	.	.	.	590			.	.	.	.	.	.	.	.	.	600	.	.	.	.	.							.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.
Predicted Secondary structure											.	.																.	.	.	.	.	.
Query SS confidence											.	.																.	.	.	.	.	.
Query Sequence		I	L	E	Q	R	E	S	L	P	.	.	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	.	.	.	.	.	.	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S
Query Conservation											.	.																.	.	.	.	.	.
Alig confidence											.	.																.	.	.	.	.	.														.
Template Conservation																																															.
Template Sequence		A	E	E	F	I	K	S	L	P	F	K	L	T	N	A	Q	K	R	A	H	Q	E	I	R	N	D	M	I	S	E	K	P	M	N	R	L	L	Q	G	D	V	G	S	G	K	.	T	V	V	A	Q	L	A	I	L	D	N	Y	E	A
Template Known Secondary structure									S	S	S																			S	S	S										S	S	S	S		.
Template Predicted Secondary structure																																															.
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.		.	.	.	.	.	.	.	410	.	.	.	.	.	.
		634	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.											.	.	.	.	.	.	.	.	680	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	.	.	.	.	.	.	.	.	.	.	F	E	D	C	T	S	P	E	T	V	I	K
Query Conservation																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																												.												.	.	.	.	.	.	.	.	.	.
Template Conservation																												.
Template Sequence		G	F	Q	T	A	F	M	V	P	T	S	I	L	A	I	Q	H	Y	R	R	T	V	E	S	F	S	.	K	F	N	I	H	V	A	L	L	I	G	A	T	T	P	S	E	K	E	K	I	K	S	G	L	R	N	G	Q	I	D	V	V
Template Known Secondary structure		T	S							S																	T	.		S	S								S	S	S														S	S
Template Predicted Secondary structure																												.
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.		.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
		684	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L	T	Q	Y	A	I	I	M	L	D	E	A	H	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T
Query Conservation
Alig confidence													.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	G	T	H	A	L	I	Q	E	D	V	.	.	.	.	H	F	K	N	L	G	L	V	I	I	D	E	Q	H	R	F	E	A	.	.	.	.	.	.	.	.	.	.	.	L	M	N	K	G	K	M	V	D	T	L	V	M	S	A	T
Template Known Secondary structure					T	T							.	.	.	.			S									S							.	.	.	.	.	.	.	.	.	.	.			S	S	S	S									S	S
Template Predicted Secondary structure													.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.					.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.												.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		744	.	.	.	.	.	750	.		.	.	.	.	.	.	.	.	760	.	.	.	.	.	.				.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.																.	.	.
Query SS confidence										.																.	.	.
Query Sequence		L	D	A	V	K	F	S	Q	.	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	.	.	.	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D
Query Conservation										.																.	.	.
Alig confidence										.																.	.	.																								.	.	.	.	.
Template Conservation																																																				.	.	.	.	.
Template Sequence		P	I	P	R	S	M	A	L	A	F	Y	G	D	L	D	V	T	V	I	D	E	M	P	P	G	R	K	E	V	Q	T	M	L	V	P	M	D	R	V	N	E	V	Y	E	F	V	R	Q	E	V	.	.	.	.	.	M	R	G	G	Q
Template Known Secondary structure												T			S	S									S	S											S	S	T												T	.	.	.	.	.	T	T	S
Template Predicted Secondary structure																																																				.	.	.	.	.
Template SS confidence
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.						.	.	.	.	580
		800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.
Template Sequence		A	F	I	V	Y	P	L	I	K	S	A	V	E	M	Y	E	Y	L	S	K	E	.	.	.	.	.	.	.	.	.	V	F	K	L	G	L	M	H	G	R	L	S	Q	E	E	K	D	R	V	M	L	E	F	A	E	G	R	Y	D	I
Template Known Secondary structure		B			B													S	G	G	G	S	.	.	.	.	.	.	.	.	.				B					S	S	S			S		S								T	T	T	S	S	S	B
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.
Template SS confidence
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.										.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.
		860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	.	T
Query Conservation																																																												.
Alig confidence																						.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.																.
Template Conservation																						.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Template Sequence		L	V	S	T	T	V	I	E	V	G	I	D	V	P	R	A	N	V	M	V	.	.	.	.	.	.	.	.	I	E	N	P	E	R	.	.	.	.	.	.	.	.	.	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	G
Template Known Secondary structure					S	S				S		S			T	T						.	.	.	.	.	.	.	.	B		S		S	S	.	.	.	.	.	.	.	.	.	S		T	T								T	S			S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.
Template SS confidence
		643	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.									.	.	.	.	.	.										.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.
		919	920	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	P	G	K	C	Y	R	L	Y	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	E	A	Y	C	F	L	V	V	G
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		686	.	.	.	690	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D