Job Description A2A4P0 Confidence 99.75% Date Wed Jul 10 14:06:11 BST 2013 Rank 42 Aligned Residues 303 % Identity 17% Template c1gl9B_ PDB info PDB header:topoisomerase Chain: B: PDB Molecule:reverse gyrase; PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp Resolution 3.2 Å

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		592	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	K	L	K	E	Q	L	V	Q	A	V	H	D	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R	V	A	A	M	S	V	A
Query Conservation
Alig confidence																														.
Template Conservation																														.
Template Sequence		R	A	I	Q	K	M	W	A	K	R	I	L	R	K	E	S	F	A	A	T	A	P	T	G	V	G	K	T	.	S	F	G	L	A	M	S	L	F	L	A	L	K	G	K	R	C	Y	V	I	F	P	T	S	L	L	V	I	Q	A	A
Template Known Secondary structure														T	T									B	T	S				.												T	T	T								S	S
Template Predicted Secondary structure																														.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
		652	.	.	.	.	.				.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.									.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Predicted Secondary structure								.	.	.																		.	.	.	.	.	.	.	.
Query SS confidence								.	.	.																		.	.	.	.	.	.	.	.
Query Sequence		K	R	V	S	E	E	.	.	.	F	G	C	C	L	G	Q	E	V	G	Y	T	I	R	F	E	D	.	.	.	.	.	.	.	.	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	L
Query Conservation								.	.	.																		.	.	.	.	.	.	.	.
Alig confidence								.	.	.																		.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																																																									.	.	.
Template Sequence		E	T	I	R	K	Y	A	E	K	A	G	V	G	T	E	N	L	I	G	Y	Y	H	G	R	I	P	K	R	E	K	E	N	F	M	Q	N	L	R	N	F	K	I	V	I	T	T	T	Q	F	L	S	K	H	Y	R	.	.	.	E	L
Template Known Secondary structure									T	T	T					T	T	T						S												T	T	T	T	S		S													S	S	.	.	.	S	S
Template Predicted Secondary structure																																																									.	.	.
Template SS confidence
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.
		701	.	.	.	.	.	.	.	.	710	.	.				.	.	.	.	.	.	.	720	.	.	.	.	.								.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.				.	.
Predicted Secondary structure														.	.	.														.	.	.	.	.	.	.																					.	.	.
Query SS confidence														.	.	.														.	.	.	.	.	.	.																					.	.	.
Query Sequence		T	Q	Y	A	I	I	M	L	D	E	A	H	.	.	.	E	R	T	I	H	T	D	V	L	F	G	L	L	.	.	.	.	.	.	.	K	K	T	V	Q	K	R	Q	D	M	K	L	I	V	T	S	A	T	L	D	.	.	.	A	V
Query Conservation														.	.	.														.	.	.	.	.	.	.																					.	.	.
Alig confidence														.	.	.														.	.	.	.	.	.	.																					.	.	.
Template Conservation
Template Sequence		G	H	F	D	F	I	F	V	D	D	V	D	A	I	L	K	A	S	K	N	V	D	K	L	L	H	L	L	G	F	H	Y	D	L	K	T	K	S	W	V	G	E	A	R	G	C	L	M	V	S	T	A	T	A	K	K	G	K	K	A
Template Known Secondary structure					S					S		S					T	S												T				B	T	T	T	T	B							S							B	S	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		748	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I	H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.
Template Sequence		E	L	F	R	Q	L	L	N	F	D	I	G	S	S	R	I	T	V	R	N	V	E	D	V	A	V	N	D	E	S	I	S	T	L	S	S	I	L	E	K	L	.	.	.	.	.	.	.	.	G	T	G	G	I	I	Y	A	R	T	G
Template Known Secondary structure									S					B	S													S				T	T	T	T					T	T	S	.	.	.	.	.	.	.	.		S							S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.									.	.	.	.	.	280	.	.	.	.	.
		808	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.					.
Predicted Secondary structure																																																									.	.	.	.
Query SS confidence																																																									.	.	.	.
Query Sequence		E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P	A	P	P	G	S	R	K	V	V	I	A	.	.	.	.	T
Query Conservation																																																									.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	A	E	E	I	Y	E	S	L	K	N	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	R	I	G	I	V	T	A	T	K	K	G	D	Y	E	K	F	V	E	G	E	I	D	H	L	I	G	T	A	H	Y	Y
Template Known Secondary structure									T	T	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S				B		S	S	S										T	T	S		S
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.																.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		864	.	.	.	.	.	870	.	.	.	.		.	.	.	.	.	880	.	.	.	.	.	.
Predicted Secondary structure													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	I	A	E	T	S	L	T	I	D	G	.	I	Y	Y	V	V	D	P	G	F	V	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	T	L	V	R	G	L	D	L	P	E	R	I	R	F	A	V	F	V	G	C	P	S	F	R	V	T	I	E	D	I	D	S	L	S	P	Q	M	V	K	L	L	A	Y	L	Y	R	N	V	D	E	I	E	R	L	L	P	A	V	E
Template Known Secondary structure				T	G	G	G	T			T	T	T								S								T	T	T		S	S	S		G	G	G						S	S			T	T	T	T					S	S		S	T
Template Predicted Secondary structure
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390
										887	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.										.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	.	.	.	.	.	.	.	.	.	S	Q	A	Q	A	K	Q	R	A	G	R	A	G	R	T	G	P	G
Query Conservation		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	H	I	D	E	V	R	E	I	L	K	K	V	M	G	K	E	R	P	Q	A	K	D	V	V	V	R	E	G	E	V	I	F	P	D	L	R	T	Y	I	Q	G	S	G	R	T	S	R	L	F	A	G
Template Known Secondary structure		T		S										S	S	S	S						S	S	S	B		S	S	S																T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		391	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D