Job Description A2A4P0 Confidence 99.58% Date Wed Jul 10 14:06:11 BST 2013 Rank 54 Aligned Residues 305 % Identity 15% Template c1c4oA_ PDB info PDB header:replication Chain: A: PDB Molecule:dna nucleotide excision repair enzyme uvrb; PDBTitle: crystal structure of the dna nucleotide excision repair enzyme uvrb2 from thermus thermophilus Resolution 1.50 Å

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		590	.	.	.	.	.	.	.	.	.	600	.	.	.	.						.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.
Query SS confidence																	.	.	.	.	.
Query Sequence		P	I	Y	K	L	K	E	Q	L	V	Q	A	V	H	D	.	.	.	.	.	N	Q	I	L	I	V	I	G	E	T	G	S	G	K	T	T	Q	I	T	Q	Y	L	A	E	A	G	Y	T	S	R	G	K	I	G	C	T	Q	P	R	R
Query Conservation																	.	.	.	.	.
Alig confidence																	.	.	.	.	.																											.	.	.	.
Template Conservation																																																.	.	.	.
Template Sequence		S	P	K	G	D	Q	P	K	A	I	A	G	L	V	E	A	L	R	D	G	E	R	F	V	T	L	L	G	A	T	G	T	G	K	T	V	T	M	A	K	V	I	E	A	L	G	.	.	.	.	R	P	A	L	V	L	A	P	N	K
Template Known Secondary structure					T	T														T	T		S								T	T	S														T	.	.	.	.								S	S
Template Predicted Secondary structure																																																.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.
		645	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	A	M	S	V	A	K	R	V	S	E	E	F	G	C	C	L	G	Q	E	V	G	Y	T	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	I	L	A	A	Q	L	A	A	E	F	R	E	L	F	P	E	N	A	V	E	Y	F	I	S	Y	Y	D	Y	Y	Q	P	E	A	Y	V	P	G	K	D	L	Y	I	E	K	D	A	S	I	N	P	E	I	E	R	L	R
Template Known Secondary structure		.	.	.	.															T	T	S								G	G	G	T	S							G	G	G	T								S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
				671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.			700	.	.	.	.	.	.	.	.	.	710	.	.
Predicted Secondary structure		.	.																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	R	F	E	D	C	T	S	P	E	T	V	I	K	Y	M	T	D	G	M	L	L	R	E	C	L	I	D	P	D	.	.	L	T	Q	Y	A	I	I	M	L	D	E	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	S	T	T	R	S	L	L	T	R	R	D	V	I	V	V	A	S	V	S	A	I	Y	G	L	G	D	P	R	E	Y	R	A	R	N	L	V	G	F	V	L	F	P	A	T	H	Y	L	S	P	E	G	L	E	E	I	L	K	E	I
Template Known Secondary structure												S								G	G	G		S													B					B			S		S					S	S
Template Predicted Secondary structure
Template SS confidence
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	K	E	L	W	E	R	V	R	Y	F	E	E	R	G	E	V	L	Y	A	Q	R	L	K	E	R	T	L	Y	D	L	E	M	L	R	V	M	G	T	C	P	G	V	E	N	Y	A	R	Y	F	T	G	K	A	P	G	E	P	P	Y
Template Known Secondary structure															T	T																							S			T	T	G	G	G	G						T			T	T	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
																																											713	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	T	I	H	T	D	V	L	F	G	L	L	K	K	T	V	Q	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	L	L	D	Y	F	P	E	D	F	L	V	F	L	D	E	S	H	V	T	V	P	Q	L	Q	G	M	Y	R	G	D	Y	A	R	K	K	T	L	V	D	Y	G	F	R	L	P	S	A	L	D	N	R	P	L	R	F	E	E	F	L
Template Known Secondary structure			G	G	G	G	S		T	T							T																									T	T	S	S		G	G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
		732	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	D	M	K	L	I	V	T	S	A	T	L	D	A	V	K	F	S	Q	Y	F	Y	E	A	P	I	F	T	I	P	G	R	T	Y	P	V	E	I	L	Y	T	K	E	P	E	T	D	Y	L	D	A	S	L	I	T	V	M	Q	I
Query Conservation
Alig confidence																								.	.	.
Template Conservation																								.	.	.
Template Sequence		E	R	V	S	Q	V	V	F	V	S	A	T	P	G	P	F	E	L	A	H	S	G	.	.	.	R	V	V	E	Q	I	I	R	P	T	G	L	L	D	P	L	V	R	V	K	P	T	E	N	Q	I	L	D	L	M	E	G	I	R	E
Template Known Secondary structure			T		S							S	S										S	.	.	.							S		T	T												S	T	T
Template Predicted Secondary structure																								.	.	.
Template SS confidence
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400				.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
		792	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	T	E	P	P	G	D	I	L	V	F	L	T	G	Q	E	E	I	D	T	A	C	E	I	L	Y	E	R	M	K	S	L	G	P	D	V	P	E	L	I	I	L	P	V	Y	S	A	L	P	S	E	M	Q	T	R	I	F	D	P
Query Conservation
Alig confidence							.																								.	.	.	.	.	.	.	.	.
Template Conservation							.																								.	.	.	.	.	.	.	.	.
Template Sequence		R	A	A	R	G	.	E	R	T	L	V	T	V	L	T	V	R	M	A	E	E	L	T	S	F	L	V	E	H	.	.	.	.	.	.	.	.	.	G	I	R	A	R	Y	L	H	H	E	L	D	A	F	K	R	Q	A	L	I	R	D
Template Known Secondary structure					T	T	.								S	S														T	.	.	.	.	.	.	.	.	.	T								T	T
Template Predicted Secondary structure							.																								.	.	.	.	.	.	.	.	.
Template SS confidence
		436	.	.	.	440		.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.										.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		852	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	P	G	S	R	K	V	V	I	A	T	N	I	A	E	T	S	L	T	I	D	G	I	Y	Y	V	V	D	P	G	F	V	K	Q	K	V	Y	N	S	K	T	G	I	D	Q	L	V	V	T	P	I	S	Q	A	Q	A	K	Q	R
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.											.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.											.	.	.	.	.
Template Sequence		L	R	L	G	H	Y	D	C	L	V	G	I	N	L	L	R	E	G	L	D	I	P	E	V	S	L	V	A	.	.	.	.	.	.	.	.	I	L	D	A	D	K	E	G	F	L	.	.	.	.	.	R	S	E	R	S	L	I	Q	T
Template Known Secondary structure				T	T	S		S					S					T	T				T	T						.	.	.	.	.	.	.	.		T	T	T	T	S		S	G	G	.	.	.	.	.	G	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.											.	.	.	.	.
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.									.	.	.	.	.	.	520	.	.	.						.	.	.	.	.	.	530	.	.
		912	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	R	A	G	R	T	G	P	G	K	C	Y	R	L	Y	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	G	R	A	A	R	N	A	R	G	E	V	W	L	Y	A	D
Template Known Secondary structure			G	G	G	T	T	S	T	T								S
Template Predicted Secondary structure
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.