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Job Description | A1E960 | Confidence | 1.52% | Date | Wed Jul 10 14:29:05 BST 2013 |
Rank | 66 | Aligned Residues | 68 |
% Identity | 28% | Template | c2iykB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:regulator of nonsense transcripts 1; |
PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1
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Resolution | 2.95 Å |
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. | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
L | G | L | I | G | A | S | S | S | A | P | L | . |
I | S | Q | R | L | L | S | A | S | N | S | H | E | L | L | L | N | L | N | N | G | Q | L | L | P | L | Q | F | Q | G | A | F | N | S | W | I | P | P | F | P | G | F | L | Q | Q | Q | Q |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
L | G | F | I | P | A | K | A | D | S | V | V | V | L | L | C | R | Q | P | C | A | S | Q | S | S | L | K | D | I | N | W | D | S | S | Q | W | Q | P | L | I | Q | D | R | C | F | L | S | W | L | V | K | I | P | S | E | Q | E | Q | L | R |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . |
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66 | . | . | . | 70 | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
A | Q | V | S | G | R | P | Q | F |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
A | R | Q | I | T | A | Q | Q | I |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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144 | . | . | . | . | . | 150 | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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Phyre2 is part of Genome3D |
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