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Job DescriptionA1E960
Confidence1.52%DateWed Jul 10 14:29:05 BST 2013
Rank66Aligned Residues68
% Identity28%Templatec2iykB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10........ .20.........30.........40.........50.........60.....
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Query Sequence  LGLIGASSSAPL. ISQRLLSASNSHELLLNLNNGQLLPLQFQGAFNSWIPPFPGFLQQQQ
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Template Sequence  LGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLR
Template Known Secondary structure  TTTTTTTSTTTS
TTT

GGG
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   84.....90.........100.........110.........120.........130.........140...
 
   66...70....
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Query Sequence  AQVSGRPQF
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Template Sequence  ARQITAQQI
Template Known Secondary structure  S



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   144.....150..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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