Job Description A0JLX3 Confidence 98.50% Date Wed Jul 10 14:37:17 BST 2013 Rank 331 Aligned Residues 177 % Identity 20% Template c3tdvB_ PDB info PDB header:transferase Chain: B: PDB Molecule:gentamicin resistance protein; PDBTitle: structure of the gdp complex of wild-type aminoglycoside 2'-2 phosphotransferase-iiia Resolution 2.20 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.				.	.	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		L	E	T	I	G	Q	G	G	C	A	Q	V	K	L	A	Q	H	R	L	T	G	T	H	V	A	V	K	V	I	V	K	R	E	C	W	F	N	P	V	M	S	E	A	E	L	L	M	M	T	D	H	P	.	.	.	N	I	I	S	L
Query Conservation																																																						.	.	.
Alig confidence																	.	.	.	.	.								.																									.	.	.
Template Conservation																	.	.	.	.	.								.
Template Sequence		V	E	S	L	G	E	G	F	R	N	Y	A	I	L	V	.	.	.	.	.	N	G	D	W	V	F	R	.	F	P	K	S	Q	Q	G	A	D	E	L	N	K	E	I	Q	L	L	P	L	L	V	G	C	V	K	V	N	I	P	Q	Y
Template Known Secondary structure									S	S							.	.	.	.	.	T	T	T					.			S	S																		G	G	G		S	S	B
Template Predicted Secondary structure																	.	.	.	.	.								.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.						.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		68	.	70	.	.	.	.	.		.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure										.																																																	.	.	.
Query SS confidence										.																																																	.	.	.
Query Sequence		L	Q	V	I	E	T	K	K	.	K	L	Y	L	I	M	E	L	C	E	G	K	S	L	Y	Q	H	I	Q	N	A	G	Y	L	Q	E	D	E	A	C	P	L	F	K	Q	L	L	S	A	V	N	Y	C	H	N	Q	G	I	.	.	.
Query Conservation										.																																																	.	.	.
Alig confidence										.																					.	.																											.	.	.
Template Conservation																															.	.
Template Sequence		V	Y	I	G	K	R	S	D	G	N	P	F	V	G	Y	R	K	V	Q	G	Q	I	L	G	E	D	G	M	A	.	.	V	F	P	D	D	A	K	D	R	L	A	L	Q	L	A	E	F	M	N	E	L	S	A	F	P	V	E	T	A
Template Known Secondary structure								T	T	S											S										.	.	T																							S
Template Predicted Secondary structure																															.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
																																																											124	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	H	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	S	A	G	V	P	V	T	N	L	K	N	K	I	L	L	L	S	E	A	V	E	D	Q	V	F	P	L	L	D	E	S	L	R	D	Y	L	T	L	R	F	Q	S	Y	M	T	H	P	V	Y	T	R	Y	T	P	R	L	I	H	G
Template Known Secondary structure				T	T			B																		T	G	G	G	S																															S
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140					.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		D	L	T	P	D	N	I	M	V	E	K	D	G	K	.	.	.	.	V	K	I	I	D	F	G	L	G	T	Q	E	K	P	A	Q	K	L	N	L	F	C	E	N	Y	P	F	S	T	P	E	V	L	L	S	R	P	Y	D	M	R	K
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.																																							.
Template Conservation																																																										.
Template Sequence		D	L	S	P	D	H	F	L	T	N	L	N	S	R	Q	T	P	L	T	G	I	I	D	F	G	D	A	A	I	S	D	P	D	Y	D	Y	V	Y	L	L	E	D	C	G	E	L	F	T	R	Q	V	M	A	Y	R	G	.	E	V	D
Template Known Secondary structure					G	G	G					T	T		S	S		S								T	T						G	G	G	G	G																			T	T	.		S
Template Predicted Secondary structure																																																										.
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.		.	.	.
		183	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	V	W	G	L	G	V	V	L	Y	F	M	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	D	T	H	I	R	K	V	S	L	F	V	T	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D