Return to main results Retrieve Phyre Job Id

Job DescriptionA1KXC4
Confidence99.27%DateWed Jul 10 14:11:45 BST 2013
Rank66Aligned Residues100
% Identity12%Templatec2pkdC_
PDB info PDB header:signaling proteinChain: C: PDB Molecule:slam family member 5; PDBTitle: crystal structure of cd84: insite into slam family function
Resolution2.04 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40... ......50.........60.........70.........80
Predicted Secondary structure 









..


















Query SS confidence 




















. .




































Query Sequence  VQLNVEWGGSIIIECPLPQLH. . VRMYLCRQMAKPGICSTVVSNTFVKKEYERRVTLTPC
Query Conservation         
      
      ..  
  
                        
      
Alig confidence 




















..




































Template Conservation   

 
  
 



 
          
 
                          
  
  
Template Sequence  FTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIH
Template Known Secondary structure  TTS




S
GGGSSS

SSTT


SGGGTT
Template Predicted Secondary structure 























Template SS confidence 



























































   7..10.........20.........30.........40.........50.........60......
 
   81........90.........100.........110... ......120..
Predicted Secondary structure 





















.

Query SS confidence 
































.








Query Sequence  LDKKLFLVEMTQLTENDDGIYACGVGMKTDKGK. TQKITLNVH
Query Conservation         
    
   
 
 
 
          .         
Alig confidence 
































.








Template Conservation        

 
 

   


 
 
 
              
 
 
Template Sequence  ALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNLQIY
Template Known Secondary structure 
TTT


S

GGG
SS
SS
Template Predicted Secondary structure 










Template SS confidence 










































   67..70.........80.........90.........100.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D