Job Description A1KXC4 Confidence 99.15% Date Wed Jul 10 14:11:45 BST 2013
Rank 291 Aligned Residues 94
% Identity 14% Template c3bd4B_
PDB info
PDB header: immune systemChain: B: PDB Molecule: catalytic antibody;
PDBTitle: crystal structure of single domain vl of an anti-dna2 binding antibody 3d8 scfv and its active site revealed by3 complex structures of a small molecule and metals
Resolution 2.40 Å
Show / Hide SS confidence
Show / Hide Conservation and Alignment quality
   
22 . . . . . . . 30 . . . . . . . . . 40
. . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70 . . . .
Predicted Secondary structure  
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Query SS confidence  
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Query Sequence  
E V Q L N V E W G G S I I I E C P L P .
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Q L H V R M Y L C R Q M A K P G I C S T V V S N T F V K K E Y E R R
Query Conservation  
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Alig confidence  
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Template Conservation  
                                                                                                       
Template Sequence  
P S S L A V S A G E K V T M S C K S S Q S L F N S R T R K N Y L A W Y Q Q K P G Q S P K L L I Y W A S T R E S G V P D R
Template Known Secondary structure  
S T T S S T T T T T T S T T T T T T T
Template Predicted Secondary structure  
Template SS confidence  
   
166 . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210 . . . . . . . . . 220 . . . . .
 
   
75 . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . .
Predicted Secondary structure  
Query SS confidence  
Query Sequence  
V T L T P C L D K K L F L V E M T Q L T E N D D G I Y A C G V G M K T D K G K T Q K I
Query Conservation  
                                                                         
Alig confidence  
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Template Conservation  
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Template Sequence  
F T G S G .
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S G T D F T L T I S S V Q A E D L A V Y Y C K Q S Y T F G S G T K L E I
Template Known Secondary structure  
. . T T S S G G G B
Template Predicted Secondary structure  
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Template SS confidence  
   
226 . . . 230
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf ] [Import into BibTeX ]
 
Phyre2 is part of Genome3D