Return to main results Retrieve Phyre Job Id

Job DescriptionA1KXC4
Confidence99.76%DateWed Jul 10 14:11:45 BST 2013
Rank4Aligned Residues104
% Identity26%Templatec2frgP_
PDB info PDB header:immune systemChain: P: PDB Molecule:trem-like transcript-1; PDBTitle: structure of the immunoglobulin-like domain of human tlt-1
Resolution1.19 Å
Model Dimensions (Å)X:50.168 Y:38.518 Z:28.270

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40... ......50.........60.........70......
Predicted Secondary structure 













..
















Query SS confidence 
























. .
































Query Sequence  VLPEVQLNVEWGGSIIIECPLPQLH. . VRMYLCRQMAKPGICSTVVSNTFVKKEYERRVT
Query Conservation             
      
      ..  
  
                        
  
Alig confidence 
























..








..





















Template Conservation   
 
  
    
 



 
            
    ..                      
Template Sequence  GSLPEVLQAPVGSSILVQCHYRLQDVKAQKVWCRFL. . PEGCQPLVSSAVDRRAPAGRRT
Template Known Secondary structure 

S

TT



GGGTTS..TT

BT
TTT
Template Predicted Secondary structure 
















..










Template SS confidence 



























































   20.........30.........40.........50..... ....60.........70.......
 
   77..80.........90.........100.........110.........120....
Predicted Secondary structure 



























Query SS confidence 















































Query Sequence  LTPCLDKKLFLVEMTQLTENDDGIYACGVGMKTDKGKTQKITLNVHNE
Query Conservation             
    
   
 
 
 
                     
Alig confidence 















































Template Conservation            

 
  
   
 
 
 
 
             
 
  
Template Sequence  FLTDLGGGLLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILPP
Template Known Secondary structure  TT
S

GGG
TT


Template Predicted Secondary structure 














Template SS confidence 















































   78.80.........90.........100.........110.........120.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D