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Job DescriptionA1KXC4
Confidence99.48%DateWed Jul 10 14:11:45 BST 2013
Rank17Aligned Residues102
% Identity16%Templatec2or8A_
PDB info PDB header:immune systemChain: A: PDB Molecule:hepatitis a virus cellular receptor 1 homolog; PDBTitle: tim-1
Resolution2.50 Å
Model Dimensions (Å)X:31.040 Y:47.954 Z:27.115

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40... ......50..... ....60..... ....70........
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Query Sequence  QLNVEWGGSIIIECPLPQLH. . VRMYLCRQMAKP. . GICSTVVSNT. FVKKEYERRVTLT
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Template Sequence  EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLK
Template Known Secondary structure  TTS


B


TT



S


SSS
TT
SSSSSTT

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   6...10.........20.........30.........40.........50.........60.....
 
   7980.........90.........100......... 110.........120.....
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Query Sequence  PCLDKKLFLVEMTQLTENDDGIYACGVGMKT. DKGKTQKITLNVHNEY
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Template Conservation          

 
  
   
 
 
 
 
              
 
 
  
Template Sequence  GHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKPEL
Template Known Secondary structure  S
GGGTB

SS

GGG


SSTT


S
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   66...70.........80.........90.........100.........110...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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