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Job DescriptionA1KXC4
Confidence99.35%DateWed Jul 10 14:11:45 BST 2013
Rank32Aligned Residues102
% Identity19%Templatec2xv6D_
PDB info PDB header:viral protein/immune systemChain: D: PDB Molecule:camelid vhh 9; PDBTitle: crystal structure of the hiv-1 capsid protein c-terminal domain2 (146-220) in complex with a camelid vhh.
Resolution1.89 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40. ........50.........60...... ..
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Query Sequence  LRVLPEVQLNVEWGGSIIIECPLPQ. . . LHVRMYLCRQMAKPGICSTVVSNTF. . . . . VK
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Template Sequence  VQLVESGGGLVQAGGSLRLSCAASGSFFMSNVMAWYRQAPGKARELIAAIRGGDMSTVYD
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B


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TTT


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   2.......10.........20.........30.........40.........50.........60.
 
   6970.........80.........90.........100......... 110........
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Query Sequence  KEYERRVTLTPCLDKKLFLVEMTQLTENDDGIYACGVGMKT. DKGKTQKIT
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Template Sequence  DSVKGRFTITRDDDKNILYLQMNDLKPEDTAMYYCKASGSSWGQGTQVTVS
Template Known Secondary structure  GGGTTTTTTT
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GGG
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   61........70.........80.........90.........100.........110.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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