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Job DescriptionA1KXC4
Confidence99.09%DateWed Jul 10 14:11:45 BST 2013
Rank432Aligned Residues116
% Identity18%Templatec2edoA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:cd48 antigen; PDBTitle: solution structure of the first ig-like domain from human2 cd48 antigen
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40. ........50.........60.........70.
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Query Sequence  SGALRVLPEVQLNVEWGGSIIIECPLPQ. . LHVRMYLCRQMAKPGICSTVVSNTFVKKEY
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Template Sequence  SGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKF
Template Known Secondary structure 



SSS

B

TTS


SS


SSTT
SS

S
TT
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   3......10.........20.........30.........40.........50.........60..
 
   72.......80.........90.........100.........110.........120.........130.
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Query Sequence  ERRVTLTPCLDKKLFLVEMTQLTENDDGIYACGVGMKTDKGKTQKITLNVHNEYPEPFWE
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Template Sequence  KGRVRLDPQS. . . . GALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPVIK
Template Known Secondary structure  TTT

TTT....

SS

GGG
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   63......70.. .......80.........90.........100.........110........
 
   132.
Predicted Secondary structure 

Query SS confidence 

Query Sequence  DE
Query Conservation    
Alig confidence 

Template Conservation 
 
Template Sequence  IE
Template Known Secondary structure 

Template Predicted Secondary structure 
Template SS confidence 

   119120
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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