Emaill.a.kelley@imperial.ac.uk
DescriptionA0AUP1
DateWed Jul 10 14:15:27 BST 2013
Unique Job IDa3cffe1ada3b8788

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c1bf5A_



96.5 9 PDB header:gene regulation/dna
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: tyrosine phosphorylated stat-1/dna complex
2c3cwgA_



96.2 12 PDB header:transcription
Chain: A: PDB Molecule:signal transducer and activator of transcription
PDBTitle: unphosphorylated mouse stat3 core fragment
3c1bg1A_



94.7 6 PDB header:transcription/dna
Chain: A: PDB Molecule:protein (transcription factor stat3b);
PDBTitle: transcription factor stat3b/dna complex
4c1ciiA_



90.0 9 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
5c2efrB_



87.6 12 PDB header:contractile protein
Chain: B: PDB Molecule:general control protein gcn4 and tropomyosin 1 alpha chain;
PDBTitle: crystal structure of the c-terminal tropomyosin fragment with n- and2 c-terminal extensions of the leucine zipper at 1.8 angstroms3 resolution
6c1yvlB_



86.4 8 PDB header:signaling protein
Chain: B: PDB Molecule:signal transducer and activator of transcription
PDBTitle: structure of unphosphorylated stat1
7c3o0zD_



86.4 8 PDB header:transferase
Chain: D: PDB Molecule:rho-associated protein kinase 1;
PDBTitle: crystal structure of a coiled-coil domain from human rock i
8c2d3eD_



85.5 10 PDB header:contractile protein
Chain: D: PDB Molecule:general control protein gcn4 and tropomyosin 1
PDBTitle: crystal structure of the c-terminal fragment of rabbit2 skeletal alpha-tropomyosin
9c3ojaB_



81.9 10 PDB header:protein binding
Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein
PDBTitle: crystal structure of lrim1/apl1c complex
10c1deqF_



80.2 10 PDB header:blood clotting
Chain: F: PDB Molecule:fibrinogen (gamma chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
11c3ol1A_



80.2 15 PDB header:structural protein
Chain: A: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin (fragment 144-251) from homo sapiens,2 northeast structural genomics consortium target hr4796b
12c2v71A_



79.9 11 PDB header:nuclear protein
Chain: A: PDB Molecule:nuclear distribution protein nude-like 1;
PDBTitle: coiled-coil region of nudel
13c4gkwB_



77.5 11 PDB header:structural protein
Chain: B: PDB Molecule:spindle assembly abnormal protein 6;
PDBTitle: crystal structure of the coiled-coil domain of c. elegans sas-6
14c3ghgK_



70.9 14 PDB header:blood clotting
Chain: K: PDB Molecule:fibrinogen beta chain;
PDBTitle: crystal structure of human fibrinogen
15c3q8tB_



70.0 9 PDB header:apoptosis
Chain: B: PDB Molecule:beclin-1;
PDBTitle: crystal structure of the coiled coil domain of beclin 1, an essential2 autophagy protein
16c2fxmB_



61.0 12 PDB header:contractile protein
Chain: B: PDB Molecule:myosin heavy chain, cardiac muscle beta isoform;
PDBTitle: structure of the human beta-myosin s2 fragment
17c1ei3C_



60.7 11 PDB header:blood clotting
Chain: C: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
18c3na7A_



53.4 8 PDB header:gene regulation, chaperone
Chain: A: PDB Molecule:hp0958;
PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874
19c3tnuB_



49.1 14 PDB header:cytosolic protein
Chain: B: PDB Molecule:keratin, type ii cytoskeletal 5;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
20c1ei3E_



46.8 11 PDB header:blood clotting
Chain: E: PDB Molecule:fibrinogen;
PDBTitle: crystal structure of native chicken fibrinogen
21c2v66C_



not modelled 44.4 10 PDB header:structural protein
Chain: C: PDB Molecule:nuclear distribution protein nude-like 1;
PDBTitle: crystal structure of the coiled-coil domain of ndel1 (a.a.2 58 to 169)c
22c2gl2B_



not modelled 43.6 14 PDB header:cell adhesion
Chain: B: PDB Molecule:adhesion a;
PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada
23c3u59C_



not modelled 41.1 12 PDB header:contractile protein
Chain: C: PDB Molecule:tropomyosin beta chain;
PDBTitle: n-terminal 98-aa fragment of smooth muscle tropomyosin beta
24c1jchC_



not modelled 35.5 6 PDB header:ribosome inhibitor, hydrolase
Chain: C: PDB Molecule:colicin e3;
PDBTitle: crystal structure of colicin e3 in complex with its immunity protein
25c4a7fB_



not modelled 35.3 11 PDB header:structural protein/hydrolase
Chain: B: PDB Molecule:tropomyosin 1 alpha;
PDBTitle: structure of the actin-tropomyosin-myosin complex (rigor atm 3)
26c3ghgI_



not modelled 31.1 11 PDB header:blood clotting
Chain: I: PDB Molecule:fibrinogen gamma chain;
PDBTitle: crystal structure of human fibrinogen
27c3dtpA_



not modelled 26.3 12 PDB header:contractile protein
Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and
PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map
28c3tnuA_



not modelled 22.7 15 PDB header:cytosolic protein
Chain: A: PDB Molecule:keratin, type i cytoskeletal 14;
PDBTitle: heterocomplex of coil 2b domains of human intermediate filament2 proteins, keratin 5 (krt5) and keratin 14 (krt14)
29c1deqO_



not modelled 21.9 9 PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
30c2b9cA_



not modelled 21.1 12 PDB header:contractile protein
Chain: A: PDB Molecule:striated-muscle alpha tropomyosin;
PDBTitle: structure of tropomyosin's mid-region: bending and binding2 sites for actin
31c2xcsD_



not modelled 19.4 38 PDB header:isomerase
Chain: D: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a;
PDBTitle: the 2.1a crystal structure of s. aureus gyrase complex with gsk2994232 and dna
32c3hizB_



not modelled 19.4 11 PDB header:transferase/oncoprotein
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit
PDBTitle: crystal structure of p110alpha h1047r mutant in complex with2 nish2 of p85alpha
33c4a55B_



not modelled 18.4 12 PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: crystal structure of p110alpha in complex with ish2 of p85alpha and2 the inhibitor pik-108
34c1deqD_



not modelled 17.1 9 PDB header:blood clotting
Chain: D: PDB Molecule:fibrinogen (alpha chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
35c2ocyB_



not modelled 16.8 11 PDB header:endocytosis/exocytosis
Chain: B: PDB Molecule:rab guanine nucleotide exchange factor sec2;
PDBTitle: complex of the guanine exchange factor sec2p and the rab2 gtpase sec4p
36c2xkjE_



not modelled 15.7 31 PDB header:isomerase
Chain: E: PDB Molecule:topoisomerase iv;
PDBTitle: crystal structure of catalytic core of a. baumannii topo iv2 (pare-parc fusion truncate)
37c3swkB_



not modelled 15.5 11 PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1b fragment
38c3vkgA_



not modelled 14.7 9 PDB header:motor protein
Chain: A: PDB Molecule:dynein heavy chain, cytoplasmic;
PDBTitle: x-ray structure of an mtbd truncation mutant of dynein motor domain
39c3hnwB_



not modelled 13.9 12 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a basic coiled-coil protein of unknown function2 from eubacterium eligens atcc 27750
40d2axtc1



not modelled 13.6 38 Fold:Photosystem II antenna protein-like
Superfamily:Photosystem II antenna protein-like
Family:Photosystem II antenna protein-like
41c2axtc_



not modelled 13.6 38 PDB header:electron transport
Chain: C: PDB Molecule:photosystem ii cp43 protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
42c1bjtA_



not modelled 12.5 40 PDB header:topoisomerase
Chain: A: PDB Molecule:topoisomerase ii;
PDBTitle: topoisomerase ii residues 409-1201
43d1bjta_



not modelled 12.5 40 Fold:Type II DNA topoisomerase
Superfamily:Type II DNA topoisomerase
Family:Type II DNA topoisomerase
44c3ipkA_



not modelled 12.3 7 PDB header:cell adhesion
Chain: A: PDB Molecule:agi/ii;
PDBTitle: crystal structure of a3vp1 of agi/ii of streptococcus mutans
45c2wpqA_



not modelled 12.3 16 PDB header:membrane protein
Chain: A: PDB Molecule:trimeric autotransporter adhesin fragment;
PDBTitle: salmonella enterica sada 479-519 fused to gcn4 adaptors (2 sadak3, in-register fusion)
46c2v1yB_



not modelled 12.1 11 PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: structure of a phosphoinositide 3-kinase alpha adaptor-2 binding domain (abd) in a complex with the ish2 domain3 from p85 alpha
47c3qx3B_



not modelled 12.0 40 PDB header:isomerase/dna/isomerase inhibitor
Chain: B: PDB Molecule:dna topoisomerase 2-beta;
PDBTitle: human topoisomerase iibeta in complex with dna and etoposide
48c2rd0B_



not modelled 11.6 13 PDB header:transferase/oncoprotein
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit alpha;
PDBTitle: structure of a human p110alpha/p85alpha complex
49c4fm9A_



not modelled 10.5 40 PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 2-alpha;
PDBTitle: human topoisomerase ii alpha bound to dna
50d1unca_



not modelled 10.0 57 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
51d1yu8x1



not modelled 9.8 43 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
52c2xcqA_



not modelled 9.7 50 PDB header:isomerase
Chain: A: PDB Molecule:dna gyrase subunit b, dna gyrase subunit a;
PDBTitle: the 2.98a crystal structure of the catalytic core (b'a'2 region) of staphylococcus aureus dna gyrase
53d1y0ja1



not modelled 9.6 50 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
54c1c1gA_



not modelled 9.5 8 PDB header:contractile protein
Chain: A: PDB Molecule:tropomyosin;
PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form
55d1unda_



not modelled 9.4 57 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
56c3j21f_



not modelled 9.3 50 PDB header:ribosome
Chain: F: PDB Molecule:50s ribosomal protein l6p;
PDBTitle: promiscuous behavior of proteins in archaeal ribosomes revealed by2 cryo-em: implications for evolution of eukaryotic ribosomes (50s3 ribosomal proteins)
57c2i1kA_



not modelled 9.3 13 PDB header:cell adhesion, membrane protein
Chain: A: PDB Molecule:moesin;
PDBTitle: moesin from spodoptera frugiperda reveals the coiled-coil domain at2 3.0 angstrom resolution
58d2vuti1



not modelled 9.0 50 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
59c4dylA_



not modelled 8.8 6 PDB header:transferase
Chain: A: PDB Molecule:tyrosine-protein kinase fes/fps;
PDBTitle: f-bar domain of human fes tyrosine kinase
60c4gfhA_



not modelled 8.8 40 PDB header:isomerase/dna
Chain: A: PDB Molecule:dna topoisomerase 2;
PDBTitle: topoisomerase ii-dna-amppnp complex
61c2ww9O_



not modelled 8.4 50 PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein l39;
PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome
62c2y3aB_



not modelled 8.2 12 PDB header:transferase
Chain: B: PDB Molecule:phosphatidylinositol 3-kinase regulatory subunit beta;
PDBTitle: crystal structure of p110beta in complex with icsh2 of p85beta and2 the drug gdc-0941
63d1gnfa_



not modelled 8.0 50 Fold:Glucocorticoid receptor-like (DNA-binding domain)
Superfamily:Glucocorticoid receptor-like (DNA-binding domain)
Family:Erythroid transcription factor GATA-1
64c3mstA_



not modelled 7.9 50 PDB header:transport protein
Chain: A: PDB Molecule:putative nitrate transport protein;
PDBTitle: crystal structure of a putative nitrate transport protein (tvn0104)2 from thermoplasma volcanium at 1.35 a resolution
65c3ojaA_



not modelled 7.8 8 PDB header:protein binding
Chain: A: PDB Molecule:leucine-rich immune molecule 1;
PDBTitle: crystal structure of lrim1/apl1c complex
66c2p03A_



not modelled 7.6 7 PDB header:cell adhesion
Chain: A: PDB Molecule:alpha-2-macroglobulin receptor-associated
PDBTitle: the structure of receptor-associated protein(rap)
67c1fosF_



not modelled 7.5 10 PDB header:transcription/dna
Chain: F: PDB Molecule:c-jun proto-oncogene protein;
PDBTitle: two human c-fos:c-jun:dna complexes
68c4a1bB_



not modelled 7.4 50 PDB header:ribosome
Chain: B: PDB Molecule:rpl39;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3.
69c1izlL_



not modelled 7.3 71 PDB header:photosynthesis
Chain: L: PDB Molecule:photosystem ii: subunit psbb;
PDBTitle: crystal structure of photosystem ii
70c1izlB_



not modelled 7.2 71 PDB header:photosynthesis
Chain: B: PDB Molecule:photosystem ii: subunit psbb;
PDBTitle: crystal structure of photosystem ii
71c2pmsD_



not modelled 7.0 15 PDB header:metal transport, hydrolase
Chain: D: PDB Molecule:pneumococcal surface protein a (pspa);
PDBTitle: crystal structure of the complex of human lactoferrin n-lobe and2 lactoferrin-binding domain of pneumococcal surface protein a
72c2qa7C_



not modelled 6.8 9 PDB header:actin binding
Chain: C: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of huntingtin-interacting protein 12 (hip1) coiled-coil domain with a basic surface suitable3 for hip-protein interactor (hippi)
73c2zkr3_



not modelled 6.8 67 PDB header:ribosomal protein/rna
Chain: 3: PDB Molecule:60s ribosomal protein l39e;
PDBTitle: structure of a mammalian ribosomal 60s subunit within an 80s complex2 obtained by docking homology models of the rna and proteins into an3 8.7 a cryo-em map
74c3cvfA_



not modelled 6.7 9 PDB header:signaling protein
Chain: A: PDB Molecule:homer protein homolog 3;
PDBTitle: crystal structure of the carboxy terminus of homer3
75c1ci6A_



not modelled 6.6 10 PDB header:transcription
Chain: A: PDB Molecule:transcription factor atf-4;
PDBTitle: transcription factor atf4-c/ebp beta bzip heterodimer
76c3izso_



not modelled 6.5 50 PDB header:ribosome
Chain: O: PDB Molecule:60s ribosomal protein rpl28 (l15p);
PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
77c2kaeA_



not modelled 6.4 33 PDB header:transcription/dna
Chain: A: PDB Molecule:gata-type transcription factor;
PDBTitle: data-driven model of med1:dna complex
78c2k6nA_



not modelled 6.4 57 PDB header:structural protein
Chain: A: PDB Molecule:supervillin;
PDBTitle: solution structure of human supervillin headpiece, minimized2 average
79c2no2A_



not modelled 6.4 9 PDB header:cell adhesion
Chain: A: PDB Molecule:huntingtin-interacting protein 1;
PDBTitle: crystal structure of the dllrkn-containing coiled-coil2 domain of huntingtin-interacting protein 1
80c2k2iB_



not modelled 6.3 40 PDB header:cell cycle
Chain: B: PDB Molecule:sfi1 peptide;
PDBTitle: nmr solution structure of the c-terminal domain (t94-y172)2 of the human centrin 2 in complex with a repeat sequence of3 human sfi1 (r641-t660)
81c3nicA_



not modelled 6.2 50 PDB header:hydrolase/dna
Chain: A: PDB Molecule:eco29kir;
PDBTitle: dna binding and cleavage by the giy-yig endonuclease r.eco29ki2 inactive variant y49f
82d2ap3a1



not modelled 6.2 4 Fold:Four-helical up-and-down bundle
Superfamily:MW0975(SA0943)-like
Family:MW0975(SA0943)-like
83c2l3xA_



not modelled 6.2 14 PDB header:protein binding
Chain: A: PDB Molecule:ablim2 protein;
PDBTitle: villin head piece domain of human ablim2
84c3zf7q_



not modelled 6.1 50 PDB header:ribosome
Chain: Q: PDB Molecule:ribosomal protein l15;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
85c1xr0A_



not modelled 5.9 50 PDB header:signaling protein/growth factor receptor
Chain: A: PDB Molecule:basic fibroblast growth factor receptor 1;
PDBTitle: structural basis of snt ptb domain interactions with2 distinct neurotrophic receptors
86d1qzpa_



not modelled 5.7 14 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
87c2o3oD_



not modelled 5.6 60 PDB header:signaling protein
Chain: D: PDB Molecule:yyci protein;
PDBTitle: crystal structure of the sensor histidine kinase regulator yyci from2 bacillus subtitlis
88c2oexB_



not modelled 5.6 11 PDB header:protein transport
Chain: B: PDB Molecule:programmed cell death 6-interacting protein;
PDBTitle: structure of alix/aip1 v domain
89c3tnfB_



not modelled 5.5 11 PDB header:protein transport
Chain: B: PDB Molecule:lida;
PDBTitle: lida from legionella in complex with active rab8a
90d1yu5x1



not modelled 5.5 43 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain
91c1t2kD_



not modelled 5.4 13 PDB header:transcription/dna
Chain: D: PDB Molecule:cyclic-amp-dependent transcription factor atf-2;
PDBTitle: structure of the dna binding domains of irf3, atf-2 and jun2 bound to dna
92c2wt7B_



not modelled 5.4 15 PDB header:transcription
Chain: B: PDB Molecule:transcription factor mafb;
PDBTitle: crystal structure of the bzip heterodimeric complex2 mafb:cfos bound to dna
93d1jjcb2



not modelled 5.4 25 Fold:Putative DNA-binding domain
Superfamily:Putative DNA-binding domain
Family:Domains B1 and B5 of PheRS-beta, PheT
94c3s4rB_



not modelled 5.2 10 PDB header:structural protein
Chain: B: PDB Molecule:vimentin;
PDBTitle: crystal structure of vimentin coil1a/1b fragment with a stabilizing2 mutation
95d1ujsa_



not modelled 5.2 14 Fold:VHP, Villin headpiece domain
Superfamily:VHP, Villin headpiece domain
Family:VHP, Villin headpiece domain