Job Description A0AUP1 Confidence 5.58% Date Wed Jul 10 14:15:27 BST 2013 Rank 88 Aligned Residues 257 % Identity 11% Template c2oexB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:programmed cell death 6-interacting protein; PDBTitle: structure of alix/aip1 v domain Resolution 2.58 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.							.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.
Query Sequence		K	D	K	H	S	H	F	Y	N	Q	R	G	D	F	R	T	E	Y	N	M	L	E	E	L	E	N	K	L	I	N	S	R	K	T	E	R	A	K	I	Q	Q	Q	.	.	.	.	.	.	L	A	K	I	H	N	N	V	K	K	L	Q
Query Conservation																																												.	.	.	.	.	.
Alig confidence																																												.	.	.	.	.	.
Template Conservation
Template Sequence		D	Q	L	I	K	E	L	P	E	L	L	Q	R	N	R	E	I	L	D	E	S	L	R	L	L	D	E	E	E	A	T	D	N	D	L	R	A	K	F	K	E	R	W	Q	R	T	P	S	N	E	L	Y	K	P	L	R	A	E	G	T
Template Known Secondary structure																																								S	S	T	T			S							T
Template Predicted Secondary structure
Template SS confidence
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	L	K	D	V	K	P	T	P	D	V	V	E	K	L	R	E	M	M	E	E	I	E	N	A	I	N	T	F	K	E	E	Q	R	L	I	Y	E	E	L	I	Q	E	E	K	T	T	N	N	E	L	S	A	V	S	R	R	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	F	R	T	V	L	D	K	A	V	Q	A	D	G	Q	V	K	E	C	Y	Q	S	H	R	D	T	I	V	L	L	C	K	P	E	P	E	L	N	A	A	I	P	S	A	N	P	A	K	T	X	Q	G	S	E	V	V	N	V	L	K
Template Known Secondary structure																							T	T								T	S							T	T	S							T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	W	A	L	G	N	S	E	T	E	K	A	F	R	A	I	S	S	K	V	P	V	D	R	V	T	Q	R	T	L	P	E	Q	V	V	E	F	E	K	F	L	Q	Q	T	G	G	R	Q	G	G	W	D	A	L	D	H	Q	N	F	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	L	S	N	L	D	E	V	K	K	E	R	E	G	L	E	N	D	L	K	S	V	N	F	D	X	T	S	K	F	L	T	A	L	A	Q	D	G	V	I	N	E	E	A	L	S	V	T	E	L	D	R	V	Y	G	G	L	T	T
Template Known Secondary structure																							T																S	S	S															T
Template Predicted Secondary structure
Template SS confidence
		554	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																											.	.	.	.	.
Query SS confidence																											.	.	.	.	.
Query Sequence		K	V	R	N	K	H	K	G	K	P	T	F	M	K	E	V	V	E	H	L	P	G	R	T	L	.	.	.	.	.	D	E	V	Q	Q	H	E	K	W	Y	Q	K	F	L	T	L	E	E	K	K	K	E	S	I	Q	N	W	K	T	K
Query Conservation																											.	.	.	.	.
Alig confidence																											.	.	.	.	.
Template Conservation
Template Sequence		K	V	Q	E	S	L	K	K	Q	E	G	L	L	K	N	I	Q	V	S	H	Q	E	F	S	K	X	K	Q	S	N	N	E	A	N	L	R	E	E	V	L	K	N	L	A	T	A	Y	D	N	F	V	E	L	V	A	N	L	K	E	G
Template Known Secondary structure																									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		614	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Q	Q	K	K	E	E	I	L	K	L	K	E	K	V	D	T	V	P	L	P	S	Q	S	K	A	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	F	Y	N	E	L	T	E	I	L	V	R	F	Q	N	K	C	S	D	I	V	F	A	R	K	T	E
Template Known Secondary structure																													T
Template Predicted Secondary structure
Template SS confidence
		674	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D