Job Description A0AUP1 Confidence 89.98% Date Wed Jul 10 14:15:27 BST 2013 Rank 4 Aligned Residues 417 % Identity 9% Template c1ciiA_ PDB info PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia Resolution 3.00 Å Model Dimensions (Å) X:163.731 Y:137.085 Z:54.313

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	H	F	Y	N	Q	R	G	D	F	R	T	E	Y	N	M	L	E	E	L	E	N	K	L	I	N	S	R	K	T	E	R	A	K	I	Q	Q	Q	L	A	K	I	H	N	N	V	K	K	L	Q	N	Q	L	K	D	V	K	P	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	D	I	E	K	R	D	K	E	I	T	A	Y	K	N	T	L	S	A	Q	Q	K	E	N	E	N	K	R	T	E	A	G	K	R	L	S	A	A	I	A	A	R	E	K	D	E	N	T	L	K	T	L	R	A	G	N	A	D	A	A
Template Known Secondary structure																																																								T	T
Template Predicted Secondary structure
Template SS confidence
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	V	E	K	L	R	E	M	M	E	E	I	E	N	A	I	N	T	F	K	E	E	Q	R	L	I	Y	E	E	L	I	Q	E	E	K	T	T	N	N	E	L	S	A	V	S	R	R	I	E	S	W	A	L	G	N	S	E	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	T	R	Q	E	F	R	L	L	Q	A	E	L	R	E	Y	G	F	R	T	E	I	A	G	Y	D	A	L	R	L	H	T	E	S	R	M	L	F	A	D	A	D	S	L	R	I	S	P	R	E	A	R	S	L	I	E	Q	A	E
Template Known Secondary structure																																											T	T		S	S	S
Template Predicted Secondary structure
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	A	F	R	A	I	S	S	K	V	P	V	D	R	V	T	Q	R	T	L	P	E	Q	V	V	E	F	E	K	F	L	Q	Q	T	G	G	R	Q	G	G	W	D	A	L	D	H	Q	N	F	V	K	V	R	N	K	H	K	G	K	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	R	Q	K	D	A	Q	N	A	D	K	K	A	A	D	M	L	A	E	Y	E	R	R	K	G	I	L	D	T	R	L	S	E	L	E	K	N	G	G	A	A	L	A	V	L	D	A	Q	Q	A	R	L	L	G	Q	Q	T	R	N	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	M	K	E	V	V	E	H	L	P	G	R	T	L	D	E	V	Q	Q	H	E	K	W	Y	Q	K	F	L	T	L	E	E	K	K	K	E	S	I	Q	N	W	K	T	K	K	Q	Q	K	K	E	E	I	L	K	L	K	E	K	V
Query Conservation
Alig confidence													.
Template Conservation													.
Template Sequence		R	A	I	S	E	A	R	N	K	L	S	.	S	V	T	E	S	L	N	T	A	R	N	A	L	T	R	A	E	Q	Q	L	T	Q	Q	K	N	T	P	D	G	K	T	I	V	S	P	E	K	F	P	G	R	S	S	T	N	D	S	I
Template Known Secondary structure													.																									S	S									T	T	T	S
Template Predicted Secondary structure													.
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	V	P	L	P	S	Q	S	K	A	E	D	S	P	K	Q	R	E	E	Q	R	K	K	Q	K	L	A	V	E	A	W	K	K	R	K	S	L	E	M	S	A	K	L	A	S	Q	L	R	E	E	E	E	K	E	R	K	Q	Q	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	S	G	D	P	R	F	A	G	T	I	K	I	T	T	S	A	V	I	D	N	R	A	N	L	N	Y	L	L	S	H	S	G	L	D	Y	K	R	N	I	L	N	D	R	N	P	V	V	T	E	D	V	E	G	D	K	K	I	Y
Template Known Secondary structure					S		T	T	T		S																					T	S									T	S					S			S	S
Template Predicted Secondary structure
Template SS confidence
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	Q	R	Q	S	K	L	K	L	L	L	E	S	Y	T	Q	Q	R	R	E	Q	E	E	F	L	R	L	E	Q	E	I	K	E	K	A	E	K	A	E	K	R	K	T	A	A	D	E	L	A	R	F	Q	E	R	D	L	H	K	L
Query Conservation
Alig confidence																																																								.
Template Conservation																																																								.
Template Sequence		N	A	E	V	A	E	W	D	K	L	R	Q	R	L	L	D	A	R	N	K	I	T	S	A	E	S	A	V	N	S	A	R	N	N	L	S	A	R	T	N	E	Q	K	H	A	N	D	A	L	N	A	L	L	K	.	E	K	E	N	I
Template Known Secondary structure																																																								.
Template Predicted Secondary structure																																																								.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	K	I	L	D	R	Q	A	K	E	E	E	K	A	E	K	Q	R	R	L	T	K	L	K	E	K	V	E	N	N	V	S	R	D	P	S	R	L	Y	K	P	T	K	G	W	E	E	R	T	K	K	I	G	P	S	G	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	N	Q	L	S	G	I	N	Q	K	I	A	E	E	K	R	K	Q	D	E	L	K	A	T	K	D	A	I	N	F	T	T	E	F	L	K	S	V	S	E	K	Y	G	A	K	A	E	Q	L	A	R	E	M	A	G	Q	A	K	G
Template Known Secondary structure																																													T												T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.