Job Description A0AUP1 Confidence 9.51% Date Wed Jul 10 14:15:27 BST 2013 Rank 54 Aligned Residues 274 % Identity 8% Template c1c1gA_ PDB info PDB header:contractile protein Chain: A: PDB Molecule:tropomyosin; PDBTitle: crystal structure of tropomyosin at 7 angstroms resolution2 in the spermine-induced crystal form Resolution 7.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	D	K	H	S	H	F	Y	N	Q	R	G	D	F	R	T	E	Y	N	M	L	E	E	L	E	N	K	L	I	N	S	R	K	T	E	R	A	K	I	Q	Q	Q	L	A	K	I	H	N	N	V	K	K	L	Q	N	Q	L	K	D	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	K	M	Q	M	L	K	L	D	K	E	N	A	L	D	R	A	D	E	A	E	A	D	K	K	A	A	E	D	R	S	K	Q	L	E	D	E	L	V	S	L	Q	K	K	L	K	A	T	E	D	E	L	D	K	Y	S	E	A	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.				.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		K	P	T	P	D	V	V	E	K	L	R	E	M	M	E	E	I	E	N	A	I	N	T	F	K	.	.	.	E	E	Q	R	L	I	Y	E	E	L	I	Q	E	E	K	T	T	N	N	E	L	S	A	V	S	R	R	I	E	S	W	A
Query Conservation																											.	.	.
Alig confidence																											.	.	.
Template Conservation
Template Sequence		K	D	A	Q	E	K	L	E	L	A	E	K	K	A	T	D	A	E	A	D	V	A	S	L	N	R	R	I	Q	L	F	E	E	E	L	D	R	A	Q	E	R	L	A	T	A	L	Q	K	L	E	E	A	E	K	A	A	D	E	S	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	N	S	E	T	E	K	A	F	R	A	I	S	S	K	V	P	V	D	R	V	T	Q	R	T	L	P	E	Q	V	V	E	F	E	K	F	L	Q	Q	T	G	G	R	Q	G	G	W	D	A	L	D	H	Q	N	F	V	K	V	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	G	M	K	V	I	E	S	R	A	Q	K	D	E	E	K	M	E	I	Q	E	I	Q	L	K	E	A	K	H	I	A	E	D	A	D	R	K	Y	E	E	V	A	R	K	L	V	I	I	E	S	D	L	E	R	A	E	E	R	A	E
Template Known Secondary structure																																											T
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure													.	.
Query SS confidence													.	.
Query Sequence		N	K	H	K	G	K	P	T	F	M	K	.	.	E	V	V	E	H	L	P	G	R	T	L	D	E	V	Q	Q	H	E	K	W	Y	Q	K	F	L	T	L	E	E	K	K	K	E	S	I	Q	N	W	K	T	K	K	Q	Q	K	K	E
Query Conservation													.	.
Alig confidence													.	.
Template Conservation
Template Sequence		L	S	E	G	K	C	A	E	L	E	E	E	I	K	T	V	T	N	N	L	K	S	L	E	A	Q	A	E	K	Y	S	Q	K	E	D	K	Y	E	E	E	I	K	V	L	S	D	K	L	K	E	A	E	T	R	A	E	F	A	E	R
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	L	K	L	K	E	K	V	D	T	V	P	L	P	S	Q	S	K	A	E	D	S	P	K	Q	R	E	E	Q	R	K	K	Q	K	L	A	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	V	T	K	L	E	K	S	I	D	D	L	E	D	E	L	Y	A	Q	K	L	K	Y	K	A	I	S	E	E	L	D	H	A	L	N	D	M	T	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D