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Job DescriptionA1A5B6
Confidence100.00%DateWed Jul 10 14:22:24 BST 2013
Rank10Aligned Residues193
% Identity24%Templatec3hzjB_
PDB info PDB header:hydrolase activatorChain: B: PDB Molecule:rab gtpase-activating protein 1-like; PDBTitle: crystal structure of the rabgap domain of the rabgap1l2 protein
Resolution2.30 Å
Model Dimensions (Å)X:57.243 Y:45.743 Z:37.737

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   276...280.........290.........300.........310.........320.........330.....
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Query Sequence  LRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRKSREYEQLKSEWAQRVNPEDL
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Template Sequence  STLVKSGVPEALRAEVWQLLR. . . . . . . . . . . . . . . . . . . . . . YRIL. . . . . . . . . ITKD
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   532.......540.........550.. .... ...560
 
   336...340.........350.........360.........370.........380.........390.....
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Query Sequence  EFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTYAVTHPQVSYCQGMSDLASPI
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Template Sequence  SAQESVITRDIHRTFPAHDYFKD. TGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVL
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TTTSSTTSTTT

.TTS
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   572.......580.........590.... .....600.........610.........620.........630
 
   396...400.........410..... ....420.........430.........440.........450...
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Query Sequence  LAVMDHEGHAFVCFCGIMKR. . LAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAG
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Template Sequence  LLHXPEE. QAFCVLVKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLN
Template Known Secondary structure  TTS
.TS
SGGGT
TT
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   631...... ..640.........650.........660.........670.........680.........
 
   454.....460.........470.........480.........490.........500.
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Query Sequence  ADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPDPPEHEVELVG
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Template Sequence  LEAHXYASQWFLTLFTAKFPLCXVFHIIDLLLCEGLNIIFHVALALLK
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GGGTSTTTTTS

TT
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   690.........700.........710.........720.........730.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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