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Job DescriptionA1A5B6
Confidence100.00%DateWed Jul 10 14:22:24 BST 2013
Rank3Aligned Residues266
% Identity27%Templatec4hlqE_
PDB info PDB header:hydrolase activator/protein transportChain: E: PDB Molecule:tbc1 domain family member 20; PDBTitle: crystal structure of human rab1b bound to gdp and bef3 in complex with2 the gap domain of tbc1d20 from homo sapiens
Resolution3.30 Å
Model Dimensions (Å)X:52.248 Y:60.134 Z:49.738

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  DAEFHTYLNHEGQLSRPEELRLRIYHGG. . VEPSLRKVVWRYLLNVYPDGLTGRERMDYM
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Template Sequence  VAEIHQALNSDP. . TDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPPI. . . . . .
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Query Sequence  KRKSREYEQLKSEWAQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGP. HLRALHDL
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Template Sequence  . . . . . . . . . . . . . . . SGKNLRQMSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDI
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Query Sequence  LTTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKR. LAANFHPDGRAMATK
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Template Sequence  ILLILERNPQLHYYQGYHDIVVTFLLVVGER. LATSLVEKLSTHHLRDFMDPTMDNTKHI
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Query Sequence  FAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPP
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Template Sequence  LNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPL
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Query Sequence  DPPEHEVELVGPPSQVADTGFGSHRGRPVRQRHMLRPAGGGGGAFEDAVVHLAASSQGPS
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Query Sequence  GGGRLLRQASLDGLQQLRDNMGLRKDHLVQLSHPATLISSKSLSEPLLNSPDPLLSTSSR
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Query Sequence  PDSPSSSSPPSTQEASPSGDIAVGSPLMQEVGSPRDPGKPVPPPPPMGLPPPQEFGRGNP
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   671........680.........690.........700.........710.........720....
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Query Sequence  FMLFLCLAILLEHRDHIMRNGLDYNELAMHFDRLVRKHHLGRVLRRAKALFADY
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Template Sequence  MPIYFAAVIVLYREQEVLDCDCDMASVHHLLSQIPQDLPYETLISRAGDLFVQF
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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