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Job DescriptionA1A5B6
Confidence14.34%DateWed Jul 10 14:22:24 BST 2013
Rank63Aligned Residues189
% Identity10%Templatec3rjoA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of erap1 peptide binding domain
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   255....260.........270.........280.........290.........300.........310....
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Query Sequence  DAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKR
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Template Sequence  EGYFRKWKESNGNLSLPVDVTLAVFAVGAQST. . . EGWDFLYSKYQFSLSSTEKSQIEFA
Template Known Secondary structure  TTT
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   748.750.........760.........770......... 780.........790.........800....
 
   315....320.........330.........340..... ....350.........360.........370...
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Query Sequence  KSREYEQLKSEWAQRVNPEDLEFIRSTVLKD. VLRTDRAHPYYAGPEDGPHLRALHDLLT
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Template Sequence  LCR. . . . . . . . . . TQNKEKLQWLLDESFKGDKIKTQEFPQILTLIGRNPVGYPLAWQFLR
Template Known Secondary structure  TT..........
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GGGTSTTT
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   805.. ..810.........820.........830.........840.........850....
 
   374 .....380....... ..390.........400.........410..... ....420.........430
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Query Sequence  T. YAVTHPQVSYCQG. MSDLASPILAVMDHEGHAFVCFCGIMKR. LAANFHPDGRAMATK
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Template Sequence  KNWNKLVQKFELGSSSIAHMVMGTTNQFSTR. TRLEEVKGFFSSLKENSQLRCVQQTIET
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TT
TTTT

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   855....860.........870.........880..... ....890.........900.........910...
 
   431........440.........450.......
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Query Sequence  FAHLKLLLRHADPDFYQYLQEAGADDL
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Template Sequence  IEENIGWMDKNFDKIRVWLQSEKLERM
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   915....920.........930.........940.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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