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Job DescriptionA1A5B6
Confidence100.00%DateWed Jul 10 14:22:24 BST 2013
Rank6Aligned Residues231
% Identity23%Templatec3qybA_
PDB info PDB header:hydrolase activatorChain: A: PDB Molecule:tbc1 domain family member 4; PDBTitle: x-ray crystal structure of human tbc1d4 (as160) rabgap domain
Resolution3.50 Å
Model Dimensions (Å)X:60.549 Y:64.924 Z:44.910

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   256...260.. ...... .270.........280.........290.........300.........310...
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Query Sequence  AEFHTYL. NHEGQL. SRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMK
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Template Sequence  ITWDKKLLNCRAKIRCDMEDIHTLL. KEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPPD
Template Known Secondary structure  TTS
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   892.......900.........910...... ...920.........930.........940.........950
 
   314.....320.........330.........340.........350.........360.........370...
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Query Sequence  RKSREYEQLKSEWAQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLT
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Template Sequence  ISYKELLKQLTAQ. . . . . . . . . . . . QHAILVDLGRTFPTHPYFSV. QLGPGQLSLFNLLK
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   951........960... ......970.........980... ......990.......
 
   374.....380.........390.........400.........410..... ....420.........430.
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Query Sequence  TYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKR. . LAANFHPDGRAMATKF
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Template Sequence  AYSLLDKEVGYCQGISFVAGVLLLHMSEE. QAFEMLKFLMYDLGFRKQYRPDMMSLQIQM
Template Known Secondary structure  TTTT


TTTTS
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   998.1000.........1010.........1020...... ...1030.........1040.........1050......
 
   432.......440.........450.........460.........470.........480.........490.
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Query Sequence  AHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPPD
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Template Sequence  YQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTLFASQFSLGFVARVFDIIFLQGTEV
Template Known Secondary structure  TT
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TTTTTTS
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   1057..1060.........1070.........1080.........1090.........1100.........1110......
 
   492.......500.
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Query Sequence  PPEHEVELVG
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Template Sequence  IFKVALSLLS
Template Known Secondary structure  T
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   1117..1120......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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