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Job DescriptionA1A5B6
Confidence100.00%DateWed Jul 10 14:22:24 BST 2013
Rank5Aligned Residues232
% Identity22%Templatec3qyeA_
PDB info PDB header:hydrolase activatorChain: A: PDB Molecule:tbc1 domain family member 1; PDBTitle: crystal structure of human tbc1d1 rabgap domain
Resolution2.20 Å
Model Dimensions (Å)X:51.951 Y:66.161 Z:44.159

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   256...260........ .270.........280.........290.........300.........310..
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Query Sequence  AEFHTYLNHEGQL. . . SRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYM
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Template Sequence  TVWEKMLSTPGRSKIKFDMEKMHSAV. GQGVPRHHRGEIWKFLAEQFHLKHQFPSKQ. . .
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   772.......780.........790....... ..800.........810.........820.......
 
   313......320.........330.........340.........350.........360.........370..
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Query Sequence  KRKSREYEQLKSEWAQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLL
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Template Sequence  QPKDVPYKEL. . . . . . . . . LKQLTSQQHAILIDLGRTFPTHPYFSA. QLGAGQLSLYNIL
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   828.830....... ..840.........850.........860.... .....870.......
 
   373......380.........390.........400.........410..... ....420.........430
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Query Sequence  TTYAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKR. . LAANFHPDGRAMATK
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Template Sequence  KAYSLLDQEVGYCQGLSFVAGILLLHMSEE. EAFKMLKFLMFDMGLRKQYRPDMIILQIQ
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   878.880.........890.........900....... ..910.........920.........930......
 
   431........440.........450.........460.........470.........480.........490
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Query Sequence  FAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDALRMLEVTWSSLPP
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Template Sequence  MYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE
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GGGTSSTTTTTS

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   937..940.........950.........960.........970.........980.........990......
 
   491........500..
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Query Sequence  DPPEHEVELVGP
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Template Sequence  VIFKVALSLLGS
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   997..1000........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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