 |
Job Description | A1A5B6 | Confidence | 15.13% | Date | Wed Jul 10 14:22:24 BST 2013 |
Rank | 61 | Aligned Residues | 71 |
% Identity | 24% | Template | c2h89B_ |
PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:succinate dehydrogenase ip subunit; |
PDBTitle: avian respiratory complex ii with malonate bound
|
Resolution | 2.40 Å |
|
 |
  |   |
90 | . | . | . | . | . | . | . | . | |
|
|
. | 100 | . | . | . | . | . | . | . | . | . | 110 | . | |
|
. | |
. | . | . | . | . | . | . | 120 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
| . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |
| . | . |
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Sequence |   |
V | R | V | R | V | K | K | C | E | . |
. |
. |
S | F | L | S | P | E | F | R | S | F | A | V | D | . |
. |
P | . |
Q | I | T | S | L | D | V | L | Q | H | I | L | I | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Query Conservation |   |
  |   |   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |
|   |
|
| . | . |
| . |   |
|
|   |   |   |   |
|   |   |   |
|   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Template Conservation |   |
  |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |   |   |   |   |
|
|
|   |   |
|   |   |
|   |   |   |   |
|   |   |
|   |   |   |   |   |
|   |   |
|   |
|
|
Template Sequence |   |
K | K | F | S | I | Y | R | W | D | P | D | K | P | G | D | K | P | R | M | Q | T | Y | E | V | D | L | N | K | C | G | P | M | V | L | D | A | L | I | K | I | K | N | E | L | D | S | T | L | T | F | R | R | S | C | R | E | G | I | C | G |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |
|
| T | T | S | T | T |
|
|
|  |  |  |  |  |  |  |  | G | G | G | S |
| S | B |  |  |  |  |  |  |  |  |  |  |  | T |
| T | T |
|
|
|
|
|
|
| S | S | S | S | S |
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . |
  |
  |   |
|
|
127 | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | |
|
|
|
. | 160 |
Predicted Secondary structure |   |
. | . |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . |
|  |
Query SS confidence |   |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
Query Sequence |   |
. |
. |
A | F | D | L | N | G | K | K | N | F | G | I | S | Y | L | A | R | D | R | L | G | Q | E | T | F | L | S | L | L | S | D | W | . |
. |
. |
. |
D | L |
Query Conservation |   |
. | . |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
| . | . | . | . |
|
|
Alig confidence |   |
. | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
Template Conservation |   |
|
|   |
|   |
|
|
|   |   |   |
|
|
|   |
|   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|   |   |   |   |
|
|
|
|
|
Template Sequence |   |
S | C | A | M | N | I | A | G | G | N | T | L | A | C | T | K | K | I | D | P | D | L | S | K | T | T | K | I | Y | P | L | P | H | M | Y | V | V | K | D | L |
Template Known Secondary structure |   |
T | T |  |  |  |  | T | T |  |  |  |  | T | T | T | S | B |
|
|
|
| T | T | S |
|  |  |  |  |
| S | S | S |
|
|  |  |  | T | T |
Template Predicted Secondary structure |   |
|
|  |  |  |  |
|
|  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|