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Job DescriptionA1A5B6
Confidence11.00%DateWed Jul 10 14:22:24 BST 2013
Rank78Aligned Residues187
% Identity11%Templatec4f5cA_
PDB info PDB header:hydrolase/viral proteinChain: A: PDB Molecule:aminopeptidase n; PDBTitle: crystal structure of the spike receptor binding domain of a porcine2 respiratory coronavirus in complex with the pig aminopeptidase n3 ectodomain
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   255....260.........270.........280.........290.........300.........310....
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Query Sequence  DAEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKR
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Template Sequence  KTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQ. WDFAWGQLQQAQLVNEADKLRSA
Template Known Secondary structure  TSTTS

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   770.........780.........790.........800..... ....810.........820........
 
   315....320.........330.........340..... ....350.........360.........370...
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Query Sequence  KSREYEQLKSEWAQRVNPEDLEFIRSTVLKD. VLRTDRAHPYYAGPEDGPHLRALHDLLT
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Template Sequence  LAC. . . . . . . . . . SNEVWLLNRYLGYTLNPDLIRKQDATSTINSIASNVIGQPLAWDFVQ
Template Known Secondary structure  GGG..........


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   829830. ........840.........850.........860.........870........
 
   374 .....380.........390.........400.........410......... 420.........430.
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Query Sequence  T. YAVTHPQVSYCQGMSDLASPILAVMDHEGHAFVCFCGIMKRLAAN. FHPDGRAMATKF
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Template Sequence  SNWKKLFQDYG. SFSFSNLIQGVTRRFSSE. FELQQLEQFKKNNMDVGFGSGTRALEQAL
Template Known Secondary structure  STT
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   879880......... 890.........900....... ..910.........920.........930......
 
   432.... ...440.........450....
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Query Sequence  AHLKL. . . LLRHADPDFYQYLQEAGA
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Template Sequence  EKTKANIKWVKENKEVVLNWFIEHSL
Template Known Secondary structure  TT
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   939940.........950.........960....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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