 |
Job Description | A1A5B6 | Confidence | 20.78% | Date | Wed Jul 10 14:22:24 BST 2013 |
Rank | 44 | Aligned Residues | 96 |
% Identity | 10% | Template | c4gbaA_ |
PDB info |
PDB header:ligase/peptide | Chain: A: PDB Molecule:dcn1-like protein 3; |
PDBTitle: dcnl complex with n-terminally acetylated nedd8 e2 peptide
|
Resolution | 2.40 Å |
|
 |
  |   |
381 | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420 | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | V | S | Y | C | Q | G | M | S | D | L | A | S | P | I | L | A | V | M | D | H | E | G | H | A | F | V | C | F | C | G | I | M | K | R | L | A | A | N | F | H | P | D | G | R | A | M | A | T | K | F | A | H | L | K | L | L | L | R | H |
Query Conservation |   |
  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |
|   |   |
|
|
|
|
|
|
|
|
|   |   |
|
|   |   |
|   |   |   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |
|   |   |
|
|   |   |
Alig confidence |   |
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
Template Conservation |   |
|
|
|
| . |   |
|
|
|   |   |   |
|   |
|
|   |   |
|   |
|   |   |   |
|   |
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |
|
|
|   |   |
|
|   |   |
|   |   |
|   |   |   |
|   | . |
Template Sequence |   |
D | L | C | V | . |
D | P | T | E | F | R | V | L | L | L | A | W | K | F | Q | A | A | T | M | C | K | F | T | R | K | E | F | F | D | G | C | K | A | I | S | A | D | S | I | D | G | I | C | A | R | F | P | S | L | L | T | E | A | K | . |
Template Known Secondary structure |   |
 | T | T |
| . |
| T | T | S |  |  |  |  |  |  |  |  |  | T | T |
|
| S | T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . |
Template Predicted Secondary structure |   |
 |  |
|
| . |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
| . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
117 | . | . | 120 | |
. | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | |
  |
  |   |
441 | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | |
|
. | . | . | 470 | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
A | D | P | D | F | Y | Q | Y | L | Q | E | A | G | A | D | D | L | F | F | C | Y | R | W | L | L | L | . |
. |
E | L | K | R | E | F | A | F | D | D | A | L | R | M | L | E | V | T | W | S |
Query Conservation |   |
  |
|
|   |
|   |   |
|
|   |   |   |   |
|   |   |   |   |
|   |
|
|
|
|
|
| . | . |
|
|
|
|
|
|   |   |   |
|
|
|
|
|
|
|
|
|
|
|
Alig confidence |   |
. |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |   |   |   |   |
|
|   |   | . | . | . | . | . | . | . |
|   |
|
|
|   |   |   |
|   |   |   |   |
|
|
|   |
|   |   |
|   |
|
|   |   |
|   |
|
|
|   |
Template Sequence |   |
. |
Q | E | D | K | F | K | D | L | . |
. |
. |
. |
. |
. |
. |
Y | R | F | T | F | Q | F | G | L | D | S | E | E | G | Q | R | S | L | H | R | E | I | A | I | A | L | W | K | L | V | F | T |
Template Known Secondary structure |   |
. | S |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | S |
| T | T | T | T |
| S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
. |
|  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
175 | . | . | . | . | 180 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|