Return to main results Retrieve Phyre Job Id

Job DescriptionA1A5B6
Confidence100.00%DateWed Jul 10 14:22:24 BST 2013
Rank1Aligned Residues282
% Identity20%Templatec2g77A_
PDB info PDB header:hydrolase activator/protein transportChain: A: PDB Molecule:gtpase-activating protein gyp1; PDBTitle: crystal structure of gyp1 tbc domain in complex with rab332 gtpase bound to gdp and alf3
Resolution2.26 Å
Model Dimensions (Å)X:57.991 Y:68.256 Z:50.329

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   256...260.........270.........280.........290.........300.........310.....
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Query Sequence  AEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRK
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Template Sequence  SKFDNILKDKT. IINQQDLRQISW. NGIPKIHRPVVWKLLIGYLPVNTKRQ. . EGFLQRK
Template Known Secondary structure  TT
S.B

T.T


TTTTT
S
SBGGG..
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   256...260...... ...270........ .280.........290.........300.... .....310.
 
   316...320.........330.........340.........350.........360.........370.....
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Query Sequence  SREYEQLKSEWAQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTY
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Template Sequence  RKEYRDSLKHTFSDQHSRDIPTWH. QIEIDIPRTNPHIPLYQ. . . FKSVQNSLQRILYLW
Template Known Secondary structure  TSTTS


.GGGSSTTSGGGG...S
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   312.......320.........330..... ....340.........350.. .......360.......
 
   376...380.........390.........400. ......
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Query Sequence  AVTHPQVSYCQGMSDLASPILAVMDH. . . . . . . . . . . . . . . . . . . . . . . . . . . . EGHAFV
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Template Sequence  AIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFW
Template Known Secondary structure  T
TTT


TTGGGS
GGGGGGTTTS
GGGTS
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   368.370.........380.........390.........400.........410.........420.......
 
   408.410.........420.........430.........440.........450.........460.......
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Query Sequence  CFCGIMKRLAANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLE
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Template Sequence  CLTKLLEQITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCL
Template Known Secondary structure  TTGGGSSTT
TT

TTT
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   428.430.........440.........450.........460.........470.........480.......
 
   468.470.........480.........490.........500.........510.........520.......
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Query Sequence  LKREFAFDDALRMLEVTWSSLPPDPPEHEVELVGPPSQVADTGFGSHRGRPVRQRHMLRP
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Template Sequence  LMREFQMGTVIRMWDTYLSETSQQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQN
Template Known Secondary structure  TGGGS
S




TTT

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   488.490.........500.........510.........520.........530.........540.......
 
   528.530.........540.....
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Query Sequence  AGGGGGAFEDAVVHLAAS
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Template Sequence  PPTKDWTETDIEMLLSEA
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S
TT

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   605....610.........620..
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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