Return to main results Retrieve Phyre Job Id

Job DescriptionA1A5B6
Confidence26.85%DateWed Jul 10 14:22:24 BST 2013
Rank32Aligned Residues99
% Identity14%Templated1u5ta1
SCOP infoDNA/RNA-binding 3-helical bundle "Winged helix" DNA-binding domain Vacuolar sorting protein domain
Resolution3.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   427..430.........440. ........ 450.........460.........470..
Predicted Secondary structure  ..............




Query SS confidence 














. . . . . . . . . .







. . . .






















Query Sequence  MATKFAHLKLLLRHA. . . . . . . . . . DPDFYQYL. . . . QEAGADDLFFCYRWLLLELKREF
Query Conservation 
   
  
  

   ..........

 
  

....    
    
 











Alig confidence 














..........







....






















Template Conservation 
  

  

  
  

  
   
  

 

  
  

  







       

 


Template Sequence  LRDQLMVFQERLVEFAKKHNSELQASPEFRSKFMHMCSSIGIDPLSLFDRDKHLFTVNDF
Template Known Secondary structure 
TTTTTT
T

TTSSGGGTT
Template Predicted Secondary structure 

















Template SS confidence 



























































   32.......40.........50.........60.........70.........80.........90.
 
   473......480.........490.........500.........510.........520.....
Predicted Secondary structure 











Query SS confidence 




















































Query Sequence  AFDDALRMLEVTWSSLPPDPPEHEVELVGPPSQVADTGFGSHRGRPVRQRHML
Query Conservation     










          
 
         
    
  
       
Alig confidence 




















































Template Conservation 
 









  

  




 
 

     
   

 


 


  
  
Template Sequence  YYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKSL
Template Known Secondary structure  TTTSSS
TTTTTTT

TTT
Template Predicted Secondary structure 













Template SS confidence 




















































   92.......100.........110.........120.........130.........140....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D