Return to main results Retrieve Phyre Job Id

Job DescriptionA1A5B6
Confidence100.00%DateWed Jul 10 14:22:24 BST 2013
Rank2Aligned Residues272
% Identity21%Templatec2qfzB_
PDB info PDB header:hydrolase activatorChain: B: PDB Molecule:tbc1 domain family member 22a; PDBTitle: crystal structure of human tbc1 domain family member 22a
Resolution2.10 Å
Model Dimensions (Å)X:65.151 Y:54.267 Z:48.303

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   256...260.........270.........280.........290.........300.........310.....
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  AEFHTYLNHEGQLSRPEELRLRIYHGGVEPSLRKVVWRYLLNVYPDGLTGRERMDYMKRK
Query Conservation   

    
  


    


  
  


 
 

  


 





  

  

   
  
Alig confidence 










..











.
























..






Template Conservation        
    ..     

     .


   
  

  


         ..       
Template Sequence  DKFKQLLAGPN. . TDLEELRRLSWS. GIPKPVRPMTWKLLSGYLPANVDRR. . PATLQRK
Template Known Secondary structure  T
SB..

TT.


GGGTTSS
SBGGG..
Template Predicted Secondary structure 



..


.










..
Template SS confidence 



























































   199200......... 210.........220. ........230.........240...... ...250...
 
   316...320.........330.........340.........350.........360.........370.....
Predicted Secondary structure 



















Query SS confidence 



























































Query Sequence  SREYEQLKSEWAQRVNPEDLEFIRSTVLKDVLRTDRAHPYYAGPEDGPHLRALHDLLTTY
Query Conservation 
 

  

 

       
       
 


 



    
   
    
  
  

 

Alig confidence 












.......





















....













Template Conservation               .......      
  

 

        ....      
  

   
Template Sequence  QKEYFAFIEHYYH. . . . . . . QDTYRQIHIDIPRMSPEALILQ. . . . PKVTEIFERILFIW
Template Known Secondary structure 

.......GGG
S
TS....
Template Predicted Secondary structure 


.......














....
Template SS confidence 



























































   254.....260...... ...270.........280........ .290.........300..
 
   376...380.........390........ .400.........410.......
Predicted Secondary structure 










..................


Query SS confidence 






















. . . . . . . . . . . . . . . . . .


















Query Sequence  AVTHPQVSYCQGMSDLASPILAV. . . . . . . . . . . . . . . . . . MDHEGHAFVCFCGIMKRLA
Query Conservation 
  

 














 
..................  








  

  
 
Alig confidence 






















..................


















Template Conservation          
 


  
    
                       
   
     
     
Template Sequence  AIRHPASGYVQGINDLVTPFFVVFICEYIEVDVSGVPAEVLCNIEADTYWCMSKLLDGIQ
Template Known Secondary structure 
TTT


TTTT




TTS
TG
Template Predicted Secondary structure 


















Template SS confidence 



























































   310.........320.........330.........340.........350.........360.........
 
   418.420.........430.........440.........450.........460.........470.......
Predicted Secondary structure 












Query SS confidence 



























































Query Sequence  ANFHPDGRAMATKFAHLKLLLRHADPDFYQYLQEAGADDLFFCYRWLLLELKREFAFDDA
Query Conservation    
     

   
  
  

   

 
  

    
    
 











   

Alig confidence 



























































Template Conservation                     

    
 
   
    
        
   

   
     
Template Sequence  DNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCT
Template Known Secondary structure  GGSSTT

TT

TTTTTTS
Template Predicted Secondary structure 
















Template SS confidence 



























































   376...380.........390.........400.........410.........420.........430.....
 
   478.480.........490.........500.........510.........520.........530.......
Predicted Secondary structure 


















Query SS confidence 



























































Query Sequence  LRMLEVTWSSLPPDPPEHEVELVGPPSQVADTGFGSHRGRPVRQRHMLRPAGGGGGAFED
Query Conservation 








          
 
         
    
  
       
           
Alig confidence 




































..




















Template Conservation   



  
  
            


      

   ..
    
  
   
       
Template Sequence  IRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEK. . DFQELLLFLQNLPTAHWDDED
Template Known Secondary structure  STTTTTTT

..STS
S
TT

Template Predicted Secondary structure 





..







Template SS confidence 



























































   436...440.........450.........460.........470.. .......480.........490...
 
   538.540.....
Predicted Secondary structure 
Query SS confidence 







Query Sequence  AVVHLAAS
Query Conservation 
       
Alig confidence 







Template Conservation 
  

  
Template Sequence  ISLLLAEA
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 







   494.....500.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D