Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA2A5X5
DateTue Jul 30 12:57:36 BST 2013
Unique Job ID6d16f69d7886b479
SequenceMSGCCCSRKC ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:22.378 Y:35.206 Z:20.544
Model (left) based on template d1f7ea_
Top template information
Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
Confidence and coverage
Confidence: 9.2% Coverage: 8%
41 residues ( 8% of your sequence) have been modelled with 9.2% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
Please note: You must be registered and logged in to use Phyrealarm.
3D viewing
Interactive 3D view in Jmol
For other options to view your downloaded structure offline see the FAQ

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSGCCCSRKCPSLPAISLCSTEVSCGGPVCLPSSCRSQTWQLVTCEDSCGSSGCGSQCCQ
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Disorder  ???????


?????


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   .........70.........80.........90.........100.........110.........120
Sequence  PSCSVSSCCQPVCCEATICEPSCSVSSCAQPVCCEATICEPSCSMGSCCQPVCCEATICE
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?








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??
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   .........130.........140.........150.........160.........170.........180
Sequence  PSCSVSTCAQPVCCEATMCQPSCSVSSCQPVCCETSSCQPVLCLPATCQPVICKPCCCQP
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??





















???
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   .........190.........200.........210.........220.........230.........240
Sequence  VICEPSCCSAVCAVPASCQPMICEPVVCEPACCQPVCPTPSCCPSVCSAASSCQPVGCET
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??

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   .........250.........260.........270.........280.........290.........300
Sequence  SPCEPPCSEASACQPSACMALVCEPVCLRPVCCVQGPCEPPCVSSSCQDSSCCVSSICQP
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?

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   .........310.........320.........330.........340.........350.........360
Sequence  VCPEPSPCLPSVCVPTPCQPSCYIVKRCRSVSCEPISCPSPSCQPACCRPGSSASAICQP
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   .........370.........380.........390.........400.........410.........420
Sequence  ACPPRTFYIPSSCKPPCSPVSCRPICRPICSGPITFRQPYVTSITYRPACYRSCYSILRR
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??

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   .........430.........440.........450.........460.........470.........480
Sequence  PTCLASYSYRPVCSRQPCTDSDNDKCDSKKPTSSQPDCADSTPVKTEVSDETPCQPSEIK
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   .........490.........500..
Sequence  PASPITREAAAPQPAASKPADR
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Disorder 

????????????????????
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Confidence Key
High(9)                    Low (0)
?Disordered ( 20%)
Alpha helix ( 0%)
Beta strand ( 4%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1f7e chain A

3D model

Region: 433 - 473
Aligned: 41
Modelled: 41
Confidence: 9.2%
Identity: 15%
Fold: Knottins (small inhibitors, toxins, lectins)
Superfamily: EGF/Laminin
Family: EGF-type module

Phyre2
1

d1f7ea_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1f7ea_



9.2 15 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite