Phyre 2 alignment of A2A5X5 with c1yylS

Job Description A2A5X5
Confidence 0.39% Date Tue Jul 30 12:57:36 BST 2013

Rank 71 Aligned Residues 4

% Identity 50% Template c1yylS_

PDB info PDB header:viral protein/immune system Chain: S: PDB Molecule:cd4m33, scorpion-toxin mimic of cd4; PDBTitle: crystal structure of cd4m33, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b

Resolution 2.75 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	S	G	C	C
Query Conservation
Alig confidence
Template Conservation
Template Sequence	A	G	S	C
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	1020	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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