Phyre 2 alignment of A2A5X5 with c4bk4B_

Return to main results | Retrieve Phyre Job Id

Job Description | A2A5X5
Confidence | 1.02% | Date | Tue Jul 30 12:57:36 BST 2013
Rank | 31 | Aligned Residues | 64
% Identity | 11% | Template | c4bk4B_
PDB info | PDB header:signaling protein | Chain: B: PDB Molecule:ephrin type-a receptor 4; | PDBTitle: crystal structure of the human epha4 ectodomain
Resolution | 3.65 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | C | S | R | K | C | P | S | L | P | A | I | S | L | C | S | T | E | V | S | C | G | G | P | V | C | L | P | S | S | C | R | S | Q | T | W | Q | L | V | T | C | E | D | S | C | G | S | S | G | C | G | S | Q | C | C | Q | P | S | C | S | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | D | G | E | W | L | V | P | I | G | N | C | L | C | N | A | G | H | E | E | R | S | G | E | C | Q | . | . | A | C | K | I | G | Y | Y | K | A | L | S | T | D | A | T | C | A | K | C | P | P | H | S | Y | S | V | W | E | G | A | T | S
Template Known Secondary structure |  | S | S | S | S |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  | S | S | S |  |  | . | . |  |  |  | T | T |  |  |  |  | S |  |  | S | S |  |  |  |  |  |  | T | T |  |  |  |  |  | S | S | B | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 249 | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . |  |  | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | .
|  | 66 | . | . | . | 70 | .
Predicted Secondary structure |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |
Query Sequence |  | S | S | C | C | Q | P
Query Conservation |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |
Template Sequence |  | C | T | C | D | R | G
Template Known Secondary structure |  |  |  |  |  | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |
|  | 307 | . | . | 310 | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions
| Phyre2 is part of Genome3D |