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Job DescriptionA2A5E6
Confidence98.15%DateWed Jul 10 14:22:42 BST 2013
Rank44Aligned Residues90
% Identity13%Templatec1ubdC_
PDB info PDB header:transcription/dnaChain: C: PDB Molecule:protein (yy1 zinc finger domain); PDBTitle: co-crystal structure of human yy1 zinc finger domain bound2 to the adeno-associated virus p5 initiator element
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   230.........240.........250..... ....260.........270.
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Query Sequence  CPTCKVTVNSASQLQAHNTGAKHRWM. . . . . . . . . . . . . . . . . . VEGHQGAPRRGRGRPV
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Template Sequence  HKGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG
Template Known Secondary structure  STT


SSGGGS



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   300.........310.........320.........330.........340.........350.........
 
   272.......280.........290.........300.........310.........
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Query Sequence  SRGGTGHKTKRVIGNRGGRQGPSPPFHCALCQLHVNSETQLKQHMSSR
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Template Sequence  CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTH
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   360.........370.........380.........390.........400.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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