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Job DescriptionA2A5E6
Confidence99.53%DateWed Jul 10 14:22:42 BST 2013
Rank2Aligned Residues180
% Identity12%Templatec1tf6D_
PDB info PDB header:transcription/dnaChain: D: PDB Molecule:protein (transcription factor iiia); PDBTitle: co-crystal structure of xenopus tfiiia zinc finger domain2 bound to the 5s ribosomal rna gene internal control region
Resolution3.10 Å
Model Dimensions (Å)X:95.443 Y:62.043 Z:52.018

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   71........80. ........90.........100.........110.........120........
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Query Sequence  LKKKLFISCNI. . CHLRFNSANQAEAHYKGHRHARKLKAVEAAKSKQRPRNPTTNGTVVS
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Template Sequence  PVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLT
Template Known Secondary structure 

SSS

B
SSTTT

B
SST

SS

SSTT




SSTTTTTT
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   7..10.........20.........30.........40.........50.........60......
 
   129130.........140.........150.........160.........170.........180........
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Query Sequence  SASPPASGSPGTPQSKGPASPPLGPSLQLPPTPDPSAGDPVHSAGDPVHSELCDAAASSS
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Template Sequence  HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN. . . . . . . . . . . . . . .
Template Known Secondary structure  TTT




SSS


S
TTSSTTT

B

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   67..70.........80.........90.........100.........110.
 
   189190.........200.........210.........220.........230.........240........
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Query Sequence  SSSCPPCSPDPSREAPGPEPAEGAVGSGVNGEGRGEKGRLYCPTCKVTVNSASQLQAHNT
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Template Sequence  . . . . . . . . . . . . . . CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEK
Template Known Secondary structure  ..............S


BSSTTSSS
SSB

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B
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   112.......120.........130.........140.........150.......
 
   249250.........260.........270.........280.........290.........300........
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Query Sequence  GAKHRWMVEGHQGAPRRGRGRPVSRGGTGHKTKRVIGNRGGRQGPSPPFHCALCQLHVNS
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Template Sequence  V. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . HAGYPCKKDDSCSFVGKT
Template Known Secondary structure  S.........................................S
S



STTT




S
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   158 .160.........170......
 
   309310.........320.
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Query Sequence  ETQLKQHMSSRRH
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Template Conservation     
  
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Template Sequence  WTLYLKHVA. ECH
Template Known Secondary structure  T.T

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   177..180..... ...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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