Return to main results Retrieve Phyre Job Id

Job DescriptionA2A5E6
Confidence98.96%DateWed Jul 10 14:22:42 BST 2013
Rank10Aligned Residues119
% Identity17%Templatec2wbtA_
PDB info PDB header:dna-binding proteinChain: A: PDB Molecule:b-129; PDBTitle: the structure of a double c2h2 zinc finger protein from a2 hyperthermophilic archaeal virus in the absence of dna
Resolution2.70 Å
Model Dimensions (Å)X:59.916 Y:34.252 Z:42.257

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   70.........80.........90.........100.........110.........120.........
Predicted Secondary structure 



































Query SS confidence 



























































Query Sequence  PLKKKLFISCNICHLRFNSANQAEAHYKGHRHARKLKAVEAAKSKQRPRNPTTNGTVVSS
Query Conservation 
 


   

 

   
 
 
 
  
    

 
  
     
                 
Alig confidence 












































...............
Template Conservation 
 

 
 
 
  

       
           
      
 
  ...............
Template Sequence  VDSGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTL. . . . . . . . . . . . . . .
Template Known Secondary structure 

TT

GGGG
SS






TTS
...............
Template Predicted Secondary structure 


























...............
Template SS confidence 



























































   6...10.........20.........30.........40.........50
 
   130.........140.........150.........160.........170.........180.........
Predicted Secondary structure 



























































Query SS confidence 



























































Query Sequence  ASPPASGSPGTPQSKGPASPPLGPSLQLPPTPDPSAGDPVHSAGDPVHSELCDAAASSSS
Query Conservation                                                              
Template Conservation  ............................................................
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  ............................................................
Template Predicted Secondary structure  ............................................................
Template SS confidence 



























































  
 
   190.........200.........210.........220.........230.........240.........
Predicted Secondary structure 















































Query SS confidence 



























































Query Sequence  SSCPPCSPDPSREAPGPEPAEGAVGSGVNGEGRGEKGRLYCPTCKVTVNSASQLQAHNTG
Query Conservation                                          
  
     
   
  
  
Alig confidence  ..............











































..
Template Conservation  ..............     
        
   
       
  
   
     
  
 ..
Template Sequence  . . . . . . . . . . . . . . IHNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQHI. .
Template Known Secondary structure  ..............
GGGTTT
S
TTT

SS..
Template Predicted Secondary structure  ..............































..
Template SS confidence 



























































   51........60.........70.........80.........90....
 
   250.........260.........270.........280.........290.........300.........
Predicted Secondary structure 



















































Query SS confidence 



























































Query Sequence  AKHRWMVEGHQGAPRRGRGRPVSRGGTGHKTKRVIGNRGGRQGPSPPFHCALCQLHVNSE
Query Conservation   

                                              
  
       
Alig confidence  .........................................


















Template Conservation  .........................................  
     
  
 
 
   
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RYTEHTKVCPVCKKEFTST
Template Known Secondary structure  .........................................T



B
TTT

B
SS
Template Predicted Secondary structure  .........................................















Template SS confidence 



























































   95....100.........110...
 
   310.........320.
Predicted Secondary structure 




Query SS confidence 











Query Sequence  TQLKQHMSSRRH
Query Conservation    
  
     
Alig confidence 







.


Template Conservation    
  
  .  
Template Sequence  DSALDHVC. KKH
Template Known Secondary structure  .TT
Template Predicted Secondary structure  .
Template SS confidence 











   114.....120. ...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D