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Job DescriptionA0PJN4
Confidence100.00%DateWed Jul 10 14:10:37 BST 2013
Rank3Aligned Residues137
% Identity21%Templatec4ddiB_
PDB info PDB header:hydrolase/ligaseChain: B: PDB Molecule:ubiquitin-conjugating enzyme e2 d2, ubiquitin thioesterase PDBTitle: crystal structure of human otub1/ubch5b~ub/ub
Resolution3.80 Å
Model Dimensions (Å)X:39.632 Y:47.836 Z:30.774

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60
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Query Sequence  MKELQDIARLSDRFISVELVNENLFDWNVKLHQVDKDSVLWQDMKETNTEFILLNLTFPD
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Template Sequence  HKELNDLARDPPAQCSAGPVGDDMFHWQATIMG. PNDSPYQGGV. . . . . . . FFLTIHFPT
Template Known Secondary structure  S

SSTT
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S
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   7..10.........20.........30......... 40......... 50........
 
   61........70.........80.........90.........100.........110.........120
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Query Sequence  NFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAASLVKGQGR
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Template Sequence  DYPFKPPKVAFTTRIY. HPNINSNGSISLDILRSQ. WSPALTISKVLLSICSLLCDPNP.
Template Known Secondary structure  STTTS

SS


.BTTB
TTSBB

TTTTTS.

TT

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   5960.........70.... .....80.........90.. .......100.........110.....
 
   121........130.........140.........150
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Query Sequence  ICRKAGKSKKSFSRKEAEATFKSLVKTHEK
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Template Sequence  . . DDPLVPEIARIYKTDREKYNRIAREWTQ
Template Known Secondary structure  ..TS
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   116...120.........130.........140...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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