Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA2A3V2
DateWed Jul 10 14:16:38 BST 2013
Unique Job ID4164983c15199da1
SequenceMATWRRDGRL ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:50.985 Y:46.773 Z:62.152
Model (left) based on template d1okca_
Top template information
Fold:Mitochondrial carrier
Superfamily:Mitochondrial carrier
Family:Mitochondrial carrier
Confidence and coverage
Confidence:100.0% Coverage: 82%
278 residues ( 82% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MATWRRDGRLTGSQRLLCAGLAGAFSLSLTAPLELATVLAQVGKVQSHSLGLWATGRRVW
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Disorder  ??????????































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   .........70.........80.........90.........100.........110.........120
Sequence  LSEGPRALWKGNGVACLRLFPCSMVQLAAYRKFVVLFMDDLGRISQWSSIVTGSLAGMVS
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   .........130.........140.........150.........160.........170.........180
Sequence  TIVTYPTDLIKTRLMVQNVLEPSYRGLIHAFSTIYQQEGFLALYRGVSLTVLGAVPFSAG
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   .........190.........200.........210.........220.........230.........240
Sequence  SLLVYMNLEKVWNGPRDRFSHLQNFANVCVAAAVSQTLSFPFDTVKRKMQAQSPYLPHYG
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   .........250.........260.........270.........280.........290.........300
Sequence  GVDVHFSGAADCFRQIVKTQGVLGLWNGLTANLLKVVPYFGVMFSMFEFCKRIFLYQNGY
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   .........310.........320.........330.........340.
Sequence  TLSPLTYKLTPGVDQSLKPQELRELKKFFKRRKLHSKTPPW
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????????
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Confidence Key
High(9)                    Low (0)
?Disordered ( 18%)
Alpha helix ( 74%)
Beta strand ( 0%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1okc chain A

3D model

Region: 7 - 290
Aligned: 278
Modelled: 284
Confidence: 100.0%
Identity: 26%
Fold: Mitochondrial carrier
Superfamily: Mitochondrial carrier
Family: Mitochondrial carrier

Phyre2

PDB 2lck chain A

3D model

Region: 15 - 294
Aligned: 271
Modelled: 280
Confidence: 100.0%
Identity: 23%
PDB header:transport protein
Chain: A: PDB Molecule:mitochondrial uncoupling protein 2;
PDBTitle: structure of the mitochondrial uncoupling protein 2 determined by nmr2 molecular fragment replacement

Phyre2

PDB 1bcc chain G

3D model

Region: 259 - 298
Aligned: 40
Modelled: 40
Confidence: 45.4%
Identity: 25%
Fold: Single transmembrane helix
Superfamily: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Phyre2

PDB 3cwb chain T

3D model

Region: 259 - 298
Aligned: 40
Modelled: 40
Confidence: 44.6%
Identity: 15%
PDB header:oxidoreductase
Chain: T: PDB Molecule:mitochondrial ubiquinol-cytochrome c reductase ubiquinone-
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d

Phyre2

PDB 1ppj chain G

3D model

Region: 259 - 296
Aligned: 38
Modelled: 38
Confidence: 33.5%
Identity: 18%
Fold: Single transmembrane helix
Superfamily: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Phyre2

PDB 2z2f chain A

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 18.9%
Identity: 33%
PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme c-2;
PDBTitle: x-ray crystal structure of bovine stomach lysozyme

Phyre2

PDB 1gd6 chain A

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 17.2%
Identity: 27%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1f6s chain A

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 15.4%
Identity: 20%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1yro chain A domain 1

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 15.2%
Identity: 20%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1fkq chain A

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 14.7%
Identity: 20%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1alc chain A

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 14.0%
Identity: 20%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 3cx5 chain H domain 1

3D model

Region: 259 - 299
Aligned: 41
Modelled: 41
Confidence: 13.6%
Identity: 10%
Fold: Single transmembrane helix
Superfamily: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family: Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)

Phyre2

PDB 1iiz chain A

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 12.2%
Identity: 20%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 2fbd chain B

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 11.9%
Identity: 33%
PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.

Phyre2

PDB 1b9o chain A

3D model

Region: 250 - 266
Aligned: 17
Modelled: 17
Confidence: 10.7%
Identity: 18%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1ghl chain A

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 9.8%
Identity: 27%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 1hfx chain A

3D model

Region: 250 - 266
Aligned: 17
Modelled: 17
Confidence: 9.7%
Identity: 18%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 2d7v chain A domain 1

3D model

Region: 5 - 31
Aligned: 27
Modelled: 27
Confidence: 8.9%
Identity: 11%
Fold: OsmC-like
Superfamily: OsmC-like
Family: Ohr/OsmC resistance proteins

Phyre2

PDB 1lsg chain A domain 1

3D model

Region: 250 - 264
Aligned: 15
Modelled: 15
Confidence: 8.7%
Identity: 27%
Fold: Lysozyme-like
Superfamily: Lysozyme-like
Family: C-type lysozyme

Phyre2

PDB 2oso chain A domain 1

3D model

Region: 15 - 47
Aligned: 33
Modelled: 33
Confidence: 8.7%
Identity: 12%
Fold: Ligand-binding domain in the NO signalling and Golgi transport
Superfamily: Ligand-binding domain in the NO signalling and Golgi transport
Family: MJ1460-like

Phyre2
1

d1okca_
2

c2lckA_
3

d1bccg_
4

c3cwbT_
5

d1ppjg_
6

c2z2fA_
7

d1gd6a_
8

d1f6sa_
9

d1yroa1
10

d1fkqa_
11

d1alca_
12

d3cx5h1
13

d1iiza_
14

c2fbdB_
15

d1b9oa_
16

d1ghla_
17

d1hfxa_
18

d2d7va1
19

d1lsga1
20

d2osoa1
21



22



23



24



25



26



27



28



29



30



31



32



33



34



35



36






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1okca_



100.0 26 Fold:Mitochondrial carrier
Superfamily:Mitochondrial carrier
Family:Mitochondrial carrier
2c2lckA_



100.0 23 PDB header:transport protein
Chain: A: PDB Molecule:mitochondrial uncoupling protein 2;
PDBTitle: structure of the mitochondrial uncoupling protein 2 determined by nmr2 molecular fragment replacement
3d1bccg_



45.4 25 Fold:Single transmembrane helix
Superfamily:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
4c3cwbT_



44.6 15 PDB header:oxidoreductase
Chain: T: PDB Molecule:mitochondrial ubiquinol-cytochrome c reductase ubiquinone-
PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d
5d1ppjg_



33.5 18 Fold:Single transmembrane helix
Superfamily:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
6c2z2fA_



18.9 33 PDB header:hydrolase
Chain: A: PDB Molecule:lysozyme c-2;
PDBTitle: x-ray crystal structure of bovine stomach lysozyme
7d1gd6a_



17.2 27 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
8d1f6sa_



15.4 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
9d1yroa1



15.2 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
10d1fkqa_



14.7 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
11d1alca_



14.0 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
12d3cx5h1



13.6 10 Fold:Single transmembrane helix
Superfamily:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
13d1iiza_



12.2 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
14c2fbdB_



11.9 33 PDB header:hydrolase
Chain: B: PDB Molecule:lysozyme 1;
PDBTitle: the crystallographic structure of the digestive lysozyme 1 from musca2 domestica at 1.90 ang.
15d1b9oa_



10.7 18 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
16d1ghla_



9.8 27 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
17d1hfxa_



9.7 18 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
18d2d7va1



8.9 11 Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
19d1lsga1



8.7 27 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
20d2osoa1



8.7 12 Fold:Ligand-binding domain in the NO signalling and Golgi transport
Superfamily:Ligand-binding domain in the NO signalling and Golgi transport
Family:MJ1460-like
21d2vb1a1



not modelled 8.6 27 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
22d1hhla_



not modelled 8.6 33 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
23d1ivma_



not modelled 8.1 27 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
24d1qwia_



not modelled 7.9 27 Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
25c2acmA_



not modelled 7.9 11 PDB header:structural protein
Chain: A: PDB Molecule:mucin-1;
PDBTitle: solution structure of the sea domain of human mucin 1 (muc1)
26d1jsea_



not modelled 7.5 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
27d1juga_



not modelled 7.3 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
28c2goiC_



not modelled 7.0 27 PDB header:cell adhesion, sugar binding protein
Chain: C: PDB Molecule:sperm lysozyme-like protein 1;
PDBTitle: crystal structure of mouse sperm c-type lysozyme-like protein 1
29d2b0ja1



not modelled 7.0 16 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like
Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like
Family:HMD dimerization domain-like
30d2nwdx1



not modelled 6.9 27 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
31d2eqla_



not modelled 6.7 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
32d1qqya_



not modelled 6.3 27 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme
33c2qm6C_



not modelled 6.0 35 PDB header:transferase
Chain: C: PDB Molecule:gamma-glutamyltranspeptidase;
PDBTitle: crystal structure of helicobacter pylori gamma-glutamyltranspeptidase2 in complex with glutamate
34c2egtA_



not modelled 6.0 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein aq_1549;
PDBTitle: crystal structure of hypothetical protein (aq1549) from aquifex2 aeolicus
35d1nyed_



not modelled 5.5 27 Fold:OsmC-like
Superfamily:OsmC-like
Family:Ohr/OsmC resistance proteins
36d1lmqa_



not modelled 5.5 20 Fold:Lysozyme-like
Superfamily:Lysozyme-like
Family:C-type lysozyme

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction 

Transmembrane helices have been predicted in your sequence to adopt the topology shown below