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Job DescriptionA2A6C4
Confidence98.62%DateWed Jul 10 14:09:18 BST 2013
Rank2Aligned Residues218
% Identity20%Templatec4hydA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of a presenilin family intramembrane aspartate protease in2 c2221 space group
Resolution3.80 Å
Model Dimensions (Å)X:58.925 Y:67.434 Z:38.194

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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Query Sequence  VAAERSQRAWEDDDFEDAPMDFTPAMTGAVVTMSCSIMILLYFFYDCFVYVMIGIFSLGA
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Template Sequence  LVMPMQAAGLVAPSSVANP. . . . . . . LIFIGMLLAFTLVLLVLLRTGGRRFIAAFIGFAL
Template Known Secondary structure  TGGG






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Query Sequence  STGLYSCLAPILCHLPLWRYQWVLPGQRVSVTWPLLLLAGLCAMVTVLWVIHRNEDHWAW
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Template Sequence  FMTFLYIFGALSLL. . . . . . . . . . . . . . ALGPTTAAAAGTLIGAVAVTALLYLYPE. . . W
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Query Sequence  LLQDTLGVAYCLFVLRRVRLP. TFKNCTLFLLALLAFDVFFVFITPLFTKTGESIMVEVA
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Template Sequence  YVIDILGVLISAGVASIFGISLEPLPVLVLLVLLAVYDAISVYRTKH. . . . . . . . MITLA
Template Known Secondary structure  SSS
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   125....130.........140.........150.........160.........170. .....
 
   418.420.........430.........440.........450.........460.........470.......
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Query Sequence  SGPADSSSHERLPMVLKVPRLSFSALTLCNQPFSILGFGDIVVPGFLVAYCHRFDMQVQS
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Template Sequence  EGV. . . . . . . . . . . . . . . . . . . . . . . . . . . . GAFVMGMGDLIMPSILVVSSHVFLSAPT.
Template Known Secondary structure  TT
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   478.480.........490.........500.........510.........520...
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Query Sequence  RQVYYMACTVAYAVGLLVTFVAMILMQMGQPALLYLVSSTLLTSLA
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Template Sequence  . . . . . LGAMVGSLVGLAVLLYFVNK. GNPQAGLPPLNGGAILGFLV
Template Known Secondary structure  .....STTS.SS


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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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