Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA2A6C4
DateWed Jul 10 14:09:18 BST 2013
Unique Job ID3942da38da4d6729
SequenceMACLGSLHPL ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:37.371 Y:40.653 Z:39.929
Model (left) based on template c3icuA_
Top template information
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf128;
PDBTitle: protease-associated domain of the e3 ligase grail
Confidence and coverage
Confidence: 99.4% Coverage: 19%
130 residues ( 19% of your sequence) have been modelled with 99.4% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
348 residues ( 50%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MACLGSLHPLGSLLLLFLLLLLSPEARGEYGLVRVVSKNWSKDYCVLYSSDYVNLPRDLH
Secondary structure 
SS confidence 
Disorder  ????????
?
???????
?
???
?
?????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  HAPLLSLHDGTKTPWCPDEDSFHQAQDSSPRQRPLHQTTTMVTRGNCSFYAKGWLAQDQG
Secondary structure 
SS confidence 
Disorder  ?????????????
?
????
???????
??
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  AQGLLIVSRARNQQCSDTISKPQDPSKPWPALTIPVAVLRYTDMLDIVSHTYGDTDVRVA
Secondary structure 
SS confidence 
Disorder 
?
?????????????
?
??
?
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  MFAPLEPVTDYNMAIIFILAVGTVAAGGYWAGLMEANKLQRRQAQRGGGLGGHNQQQTVA
Secondary structure 
SS confidence 
Disorder 
?????????
?????????????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  AERSQRAWEDDDFEDAPMDFTPAMTGAVVTMSCSIMILLYFFYDCFVYVMIGIFSLGAST
Secondary structure 
SS confidence 
Disorder  ?????????????????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  GLYSCLAPILCHLPLWRYQWVLPGQRVSVTWPLLLLAGLCAMVTVLWVIHRNEDHWAWLL
Secondary structure 
SS confidence 
Disorder 
?
???????
??
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  QDTLGVAYCLFVLRRVRLPTFKNCTLFLLALLAFDVFFVFITPLFTKTGESIMVEVASGP
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  ADSSSHERLPMVLKVPRLSFSALTLCNQPFSILGFGDIVVPGFLVAYCHRFDMQVQSRQV
Secondary structure 
SS confidence 
Disorder  ??????
??
???
????
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  YYMACTVAYAVGLLVTFVAMILMQMGQPALLYLVSSTLLTSLAVATCRQEFTLFWTGQGR
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  AKIPAEPVAQPCIASAVGSKMKLEDAKDSRTTNRFEQAVDGESGDLESSTGDDMAEMVTL
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????
??
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  SEDEATSPEGHSESSEGWSDTNLDPNELPSGSPMALEAMLIPLIQPIPHPSELGHIRTQS
Secondary structure 
SS confidence 
Disorder  ???????????????????????????
????????
?
??????
?
?
??
?
Disorder confidence 
 
   .........670.........680.........690
Sequence  RVHDSSLPWMGLHKRKGLKVKKSMSAQAPL
Secondary structure 
SS confidence 
Disorder  ??
?
?
???
?
???????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 40%)
Alpha helix ( 47%)
Beta strand ( 8%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3icu chain A

3D model

Region: 40 - 181
Aligned: 130
Modelled: 142
Confidence: 99.4%
Identity: 16%
PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf128;
PDBTitle: protease-associated domain of the e3 ligase grail

Phyre2

PDB 4hyd chain A

3D model

Region: 239 - 523
Aligned: 218
Modelled: 239
Confidence: 98.6%
Identity: 20%
PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a presenilin family intramembrane aspartate protease in2 c2221 space group

Phyre2

PDB 1de4 chain C domain 2

3D model

Region: 95 - 174
Aligned: 80
Modelled: 80
Confidence: 98.1%
Identity: 24%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: PA domain
Family: PA domain

Phyre2

PDB 3bi1 chain A domain 2

3D model

Region: 95 - 175
Aligned: 81
Modelled: 81
Confidence: 98.0%
Identity: 26%
Fold: The "swivelling" beta/beta/alpha domain
Superfamily: PA domain
Family: PA domain

Phyre2

PDB 2oot chain A

3D model

Region: 95 - 175
Aligned: 81
Modelled: 81
Confidence: 97.8%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:glutamate carboxypeptidase 2;
PDBTitle: a high resolution structure of ligand-free human glutamate2 carboxypeptidase ii

Phyre2

PDB 1xf1 chain A

3D model

Region: 95 - 169
Aligned: 65
Modelled: 75
Confidence: 97.7%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:c5a peptidase;
PDBTitle: structure of c5a peptidase- a key virulence factor from2 streptococcus

Phyre2

PDB 3rbu chain A

3D model

Region: 95 - 175
Aligned: 81
Modelled: 81
Confidence: 97.7%
Identity: 26%
PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:glutamate carboxypeptidase 2;
PDBTitle: n-terminally avitev-tagged human glutamate carboxypeptidase ii in2 complex with 2-pmpa

Phyre2

PDB 1cx8 chain F

3D model

Region: 95 - 175
Aligned: 81
Modelled: 81
Confidence: 97.6%
Identity: 21%
PDB header:metal transport
Chain: F: PDB Molecule:transferrin receptor protein;
PDBTitle: crytal structure of the ectodomain of human transferrin receptor

Phyre2

PDB 2kr6 chain A

3D model

Region: 453 - 510
Aligned: 52
Modelled: 58
Confidence: 97.3%
Identity: 33%
PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit

Phyre2

PDB 2ek8 chain A

3D model

Region: 95 - 181
Aligned: 79
Modelled: 87
Confidence: 97.3%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase;
PDBTitle: aminopeptidase from aneurinibacillus sp. strain am-1

Phyre2

PDB 3iib chain A

3D model

Region: 95 - 181
Aligned: 84
Modelled: 87
Confidence: 96.2%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:peptidase m28;
PDBTitle: crystal structure of peptidase m28 precursor (yp_926796.1) from2 shewanella amazonensis sb2b at 1.70 a resolution

Phyre2

PDB 4kng chain F

3D model

Region: 72 - 185
Aligned: 94
Modelled: 113
Confidence: 95.4%
Identity: 20%
PDB header:signaling protein, membrane protein
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase rnf43;
PDBTitle: crystal structure of human lgr5-rspo1-rnf43

Phyre2

PDB 3vta chain B

3D model

Region: 29 - 182
Aligned: 127
Modelled: 136
Confidence: 73.8%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:cucumisin;
PDBTitle: crystal structure of cucumisin, a subtilisin-like endoprotease from2 cucumis melo l

Phyre2

PDB 2rh1 chain A

3D model

Region: 284 - 404
Aligned: 110
Modelled: 121
Confidence: 36.2%
Identity: 15%
PDB header:membrane protein / hydrolase
Chain: A: PDB Molecule:beta-2-adrenergic receptor/t4-lysozyme chimera;
PDBTitle: high resolution crystal structure of human b2-adrenergic g protein-2 coupled receptor.

Phyre2

PDB 2l69 chain A

3D model

Region: 95 - 138
Aligned: 44
Modelled: 44
Confidence: 33.7%
Identity: 18%
PDB header:de novo protein
Chain: A: PDB Molecule:rossmann 2x3 fold protein;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28

Phyre2

PDB 3i74 chain B

3D model

Region: 95 - 184
Aligned: 76
Modelled: 90
Confidence: 33.2%
Identity: 7%
PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:subtilisin-like protease;
PDBTitle: crystal structure of the plant subtilisin-like protease sbt3 in2 complex with a chloromethylketone inhibitor

Phyre2

PDB 2hj0 chain A

3D model

Region: 82 - 161
Aligned: 66
Modelled: 80
Confidence: 24.3%
Identity: 17%
PDB header:lyase
Chain: A: PDB Molecule:putative citrate lyase, alfa subunit;
PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target).

Phyre2

PDB 3fem chain B

3D model

Region: 111 - 156
Aligned: 46
Modelled: 46
Confidence: 20.8%
Identity: 24%
PDB header:biosynthetic protein, transferase
Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1;
PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae

Phyre2

PDB 1rk4 chain A domain 2

3D model

Region: 105 - 116
Aligned: 12
Modelled: 12
Confidence: 20.4%
Identity: 33%
Fold: Thioredoxin fold
Superfamily: Thioredoxin-like
Family: Glutathione S-transferase (GST), N-terminal domain

Phyre2

PDB 4jkv chain A

3D model

Region: 277 - 400
Aligned: 121
Modelled: 124
Confidence: 20.3%
Identity: 12%
PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562, smoothened homolog;
PDBTitle: structure of the human smoothened 7tm receptor in complex with an2 antitumor agent

Phyre2
1
c3icuA_
2
c4hydA_
3
d1de4c2
4
d3bi1a2
5
c2ootA_
6
c1xf1A_
7
c3rbuA_
8
c1cx8F_
9
c2kr6A_
10
c2ek8A_
11
c3iibA_
12
c4kngF_
13
c3vtaB_
14
c2rh1A_
15
c2l69A_
16
c3i74B_
17
c2hj0A_
18
c3femB_
19
d1rk4a2
20
c4jkvA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3icuA_
99.4 16 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase rnf128;
PDBTitle: protease-associated domain of the e3 ligase grail
2c4hydA_
98.6 20 PDB header:membrane protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structure of a presenilin family intramembrane aspartate protease in2 c2221 space group
3d1de4c2
98.1 24 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:PA domain
Family:PA domain
4d3bi1a2
98.0 26 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:PA domain
Family:PA domain
5c2ootA_
97.8 26 PDB header:hydrolase
Chain: A: PDB Molecule:glutamate carboxypeptidase 2;
PDBTitle: a high resolution structure of ligand-free human glutamate2 carboxypeptidase ii
6c1xf1A_
97.7 25 PDB header:hydrolase
Chain: A: PDB Molecule:c5a peptidase;
PDBTitle: structure of c5a peptidase- a key virulence factor from2 streptococcus
7c3rbuA_
97.7 26 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:glutamate carboxypeptidase 2;
PDBTitle: n-terminally avitev-tagged human glutamate carboxypeptidase ii in2 complex with 2-pmpa
8c1cx8F_
97.6 21 PDB header:metal transport
Chain: F: PDB Molecule:transferrin receptor protein;
PDBTitle: crytal structure of the ectodomain of human transferrin receptor
9c2kr6A_
97.3 33 PDB header:hydrolase
Chain: A: PDB Molecule:presenilin-1;
PDBTitle: solution structure of presenilin-1 ctf subunit
10c2ek8A_
97.3 19 PDB header:hydrolase
Chain: A: PDB Molecule:aminopeptidase;
PDBTitle: aminopeptidase from aneurinibacillus sp. strain am-1
11c3iibA_
96.2 19 PDB header:hydrolase
Chain: A: PDB Molecule:peptidase m28;
PDBTitle: crystal structure of peptidase m28 precursor (yp_926796.1) from2 shewanella amazonensis sb2b at 1.70 a resolution
12c4kngF_
95.4 20 PDB header:signaling protein, membrane protein
Chain: F: PDB Molecule:e3 ubiquitin-protein ligase rnf43;
PDBTitle: crystal structure of human lgr5-rspo1-rnf43
13c3vtaB_
73.8 17 PDB header:hydrolase
Chain: B: PDB Molecule:cucumisin;
PDBTitle: crystal structure of cucumisin, a subtilisin-like endoprotease from2 cucumis melo l
14c2rh1A_
36.2 15 PDB header:membrane protein / hydrolase
Chain: A: PDB Molecule:beta-2-adrenergic receptor/t4-lysozyme chimera;
PDBTitle: high resolution crystal structure of human b2-adrenergic g protein-2 coupled receptor.
15c2l69A_
33.7 18 PDB header:de novo protein
Chain: A: PDB Molecule:rossmann 2x3 fold protein;
PDBTitle: solution nmr structure of de novo designed protein, p-loop ntpase2 fold, northeast structural genomics consortium target or28
16c3i74B_
33.2 7 PDB header:hydrolase/hydrolase inhibitor
Chain: B: PDB Molecule:subtilisin-like protease;
PDBTitle: crystal structure of the plant subtilisin-like protease sbt3 in2 complex with a chloromethylketone inhibitor
17c2hj0A_
24.3 17 PDB header:lyase
Chain: A: PDB Molecule:putative citrate lyase, alfa subunit;
PDBTitle: crystal structure of the putative alfa subunit of citrate lyase in2 complex with citrate from streptococcus mutans, northeast structural3 genomics target smr12 (casp target).
18c3femB_
20.8 24 PDB header:biosynthetic protein, transferase
Chain: B: PDB Molecule:pyridoxine biosynthesis protein snz1;
PDBTitle: structure of the synthase subunit pdx1.1 (snz1) of plp synthase from2 saccharomyces cerevisiae
19d1rk4a2
20.4 33 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:Glutathione S-transferase (GST), N-terminal domain
20c4jkvA_
20.3 12 PDB header:membrane protein
Chain: A: PDB Molecule:soluble cytochrome b562, smoothened homolog;
PDBTitle: structure of the human smoothened 7tm receptor in complex with an2 antitumor agent
21c3rgbG_
not modelled 19.1 21 PDB header:oxidoreductase
Chain: G: PDB Molecule:methane monooxygenase subunit c2;
PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath)
22c4adsF_
not modelled 18.5 22 PDB header:transferase/transferase
Chain: F: PDB Molecule:pyridoxine biosynthetic enzyme pdx1 homologue, putative;
PDBTitle: crystal structure of plasmodial plp synthase complex
23c3uonA_
not modelled 16.1 17 PDB header:signaling protein/antagonist
Chain: A: PDB Molecule:human m2 muscarinic acetylcholine, receptor t4 lysozyme
PDBTitle: structure of the human m2 muscarinic acetylcholine receptor bound to2 an antagonist
24c1jy4A_
not modelled 15.9 57 PDB header:de novo protein
Chain: A: PDB Molecule:b4dimer;
PDBTitle: b4dimer: a de novo designed eight-stranded beta-sheet2 assembled using a disulfide bond
25c3rrlC_
not modelled 15.6 13 PDB header:transferase
Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a;
PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695
26c2k2jA_
not modelled 15.4 17 PDB header:hydrolase, signaling protein
Chain: A: PDB Molecule:1-phosphatidylinositol-4,5-bisphosphate
PDBTitle: nmr solution structure of the split ph domain from2 phospholipase c gamma 2
27d1twda_
not modelled 15.2 20 Fold:TIM beta/alpha-barrel
Superfamily:CutC-like
Family:CutC-like
28c3iwpK_
not modelled 14.4 20 PDB header:metal binding protein
Chain: K: PDB Molecule:copper homeostasis protein cutc homolog;
PDBTitle: crystal structure of human copper homeostasis protein cutc
29c1tllA_
not modelled 13.8 32 PDB header:oxidoreductase
Chain: A: PDB Molecule:nitric-oxide synthase, brain;
PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution.
30c1xr4B_
not modelled 13.5 11 PDB header:hydrolase/transferase
Chain: B: PDB Molecule:putative citrate lyase alpha chain/citrate-acp transferase;
PDBTitle: x-ray crystal structure of putative citrate lyase alpha chain/citrate-2 acp transferase [salmonella typhimurium]
31c3rfrK_
not modelled 13.4 20 PDB header:oxidoreductase
Chain: K: PDB Molecule:pmoc;
PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m
32c2nv2U_
not modelled 13.3 22 PDB header:lyase/transferase
Chain: U: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: structure of the plp synthase complex pdx1/2 (yaad/e) from bacillus2 subtilis
33c2kzkA_
not modelled 12.6 40 PDB header:protein transport
Chain: A: PDB Molecule:uncharacterized protein yol083w;
PDBTitle: solution structure of alpha-mannosidase binding domain of atg34
34d1n7za_
not modelled 12.5 35 Fold:Baseplate structural protein gp8
Superfamily:Baseplate structural protein gp8
Family:Baseplate structural protein gp8
35c4grvA_
not modelled 11.8 17 PDB header:signaling protein/agonist
Chain: A: PDB Molecule:neurotensin receptor type 1, lysozyme chimera;
PDBTitle: the crystal structure of the neurotensin receptor nts1 in complex with2 neurotensin (8-13)
36c2ovsB_
not modelled 11.5 21 PDB header:gene regulation, ligand binding protein
Chain: B: PDB Molecule:l0044;
PDBTitle: crystal strcuture of a type three secretion system protein
37c4firB_
not modelled 11.4 22 PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxal biosynthesis lyase pdxs from pyrococcus
38c3lerA_
not modelled 11.4 35 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 campylobacter jejuni subsp. jejuni nctc 11168
39c2kzbA_
not modelled 11.2 40 PDB header:protein transport
Chain: A: PDB Molecule:autophagy-related protein 19;
PDBTitle: solution structure of alpha-mannosidase binding domain of atg19
40c1zgwA_
not modelled 11.1 44 PDB header:transcription regulator/dna
Chain: A: PDB Molecule:ada polyprotein;
PDBTitle: nmr structure of e. coli ada protein in complex with dna
41c2zbtB_
not modelled 11.0 26 PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxine biosynthesis protein from thermus2 thermophilus hb8
42d1tlla2
not modelled 10.8 32 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
43c2v9dB_
not modelled 10.8 28 PDB header:lyase
Chain: B: PDB Molecule:yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12
44c2yv5A_
not modelled 10.7 5 PDB header:hydrolase
Chain: A: PDB Molecule:yjeq protein;
PDBTitle: crystal structure of yjeq from aquifex aeolicus
45d1xxxa1
not modelled 10.4 35 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
46d2a6na1
not modelled 10.1 28 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
47c3daqB_
not modelled 10.0 18 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus
48d1poia_
not modelled 10.0 14 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
49d1ja1a2
not modelled 9.9 33 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
50c3fluD_
not modelled 9.6 33 PDB header:lyase
Chain: D: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from the pathogen2 neisseria meningitidis
51c2r8wB_
not modelled 9.5 35 PDB header:lyase
Chain: B: PDB Molecule:agr_c_1641p;
PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58
52d2dk8a1
not modelled 9.4 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:RPO3F domain-like
53c1bkbA_
not modelled 9.4 8 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 5a;
PDBTitle: initiation factor 5a from archebacterium pyrobaculum2 aerophilum
54d1ohfa_
not modelled 9.4 35 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Tetraviridae-like VP
55c2nuxB_
not modelled 9.0 11 PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate
PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution
56d1ooya2
not modelled 8.9 17 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
57c1qp6B_
not modelled 8.8 28 PDB header:de novo protein
Chain: B: PDB Molecule:protein (alpha2d);
PDBTitle: solution structure of alpha2d
58c2rfgB_
not modelled 8.7 35 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution
59c3vw7A_
not modelled 8.7 9 PDB header:signaling protein/antagonist
Chain: A: PDB Molecule:proteinase-activated receptor 1, lysozyme;
PDBTitle: crystal structure of human protease-activated receptor 1 (par1) bound2 with antagonist vorapaxar at 2.2 angstrom
60c3hr4C_
not modelled 8.7 22 PDB header:oxidoreductase/metal binding protein
Chain: C: PDB Molecule:nitric oxide synthase, inducible;
PDBTitle: human inos reductase and calmodulin complex
61d1o5ka_
not modelled 8.7 33 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
62c3n2xB_
not modelled 8.6 26 PDB header:lyase
Chain: B: PDB Molecule:uncharacterized protein yage;
PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate
63c3dm5A_
not modelled 8.5 63 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
64c3lciA_
not modelled 8.4 17 PDB header:lyase
Chain: A: PDB Molecule:n-acetylneuraminate lyase;
PDBTitle: the d-sialic acid aldolase mutant v251w
65c3s5oA_
not modelled 8.4 17 PDB header:lyase
Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase, mitochondrial;
PDBTitle: crystal structure of human 4-hydroxy-2-oxoglutarate aldolase bound to2 pyruvate
66c2j37W_
not modelled 8.4 63 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
67c4g7xA_
not modelled 8.3 36 PDB header:protein binding/protein binding
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a complex between the ctxphi piii n-terminal2 domain and the vibrio cholerae tola c-terminal domain
68d2ahua2
not modelled 8.3 11 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
69c3bi8A_
not modelled 8.3 33 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: structure of dihydrodipicolinate synthase from clostridium2 botulinum
70c3si9B_
not modelled 8.3 26 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bartonella2 henselae
71c3cprB_
not modelled 8.2 41 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthetase;
PDBTitle: the crystal structure of corynebacterium glutamicum2 dihydrodipicolinate synthase to 2.2 a resolution
72c4h2dB_
not modelled 8.2 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-dependent diflavin oxidoreductase 1;
PDBTitle: crystal structure of ndor1
73c3f59A_
not modelled 8.2 24 PDB header:structural protein
Chain: A: PDB Molecule:ankyrin-1;
PDBTitle: crystal structure of zu5-ank, the spectrin binding region of human2 erythroid ankyrin
74c3d0cB_
not modelled 8.2 33 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from2 oceanobacillus iheyensis at 1.9 a resolution
75c3na8A_
not modelled 8.2 18 PDB header:lyase
Chain: A: PDB Molecule:putative dihydrodipicolinate synthetase;
PDBTitle: crystal structure of a putative dihydrodipicolinate synthetase from2 pseudomonas aeruginosa
76d1hnra_
not modelled 8.1 86 Fold:H-NS histone-like proteins
Superfamily:H-NS histone-like proteins
Family:H-NS histone-like proteins
77c1qzwC_
not modelled 8.1 75 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
78c4g7wB_
not modelled 8.0 36 PDB header:protein binding
Chain: B: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of the minor coat protein2 piii from ctxphi
79c3e96B_
not modelled 8.0 29 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from bacillus2 clausii
80c3noeA_
not modelled 8.0 33 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa
81d1p42a1
not modelled 7.9 17 Fold:Ribosomal protein S5 domain 2-like
Superfamily:Ribosomal protein S5 domain 2-like
Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
82c3pueA_
not modelled 7.8 33 PDB header:lyase
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution
83c2hmcA_
not modelled 7.8 41 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: the crystal structure of dihydrodipicolinate synthase dapa from2 agrobacterium tumefaciens
84c2yzrB_
not modelled 7.8 24 PDB header:lyase
Chain: B: PDB Molecule:pyridoxal biosynthesis lyase pdxs;
PDBTitle: crystal structure of pyridoxine biosynthesis protein from2 methanocaldococcus jannaschii
85c3epmB_
not modelled 7.8 29 PDB header:biosynthetic protein
Chain: B: PDB Molecule:thiamine biosynthesis protein thic;
PDBTitle: crystal structure of caulobacter crescentus thic
86c3fkkA_
not modelled 7.8 29 PDB header:lyase
Chain: A: PDB Molecule:l-2-keto-3-deoxyarabonate dehydratase;
PDBTitle: structure of l-2-keto-3-deoxyarabonate dehydratase
87c2r94B_
not modelled 7.7 24 PDB header:lyase
Chain: B: PDB Molecule:2-keto-3-deoxy-(6-phospho-)gluconate aldolase;
PDBTitle: crystal structure of kd(p)ga from t.tenax
88d1b1ca_
not modelled 7.6 33 Fold:Flavodoxin-like
Superfamily:Flavoproteins
Family:Cytochrome p450 reductase N-terminal domain-like
89c1j9zB_
not modelled 7.6 33 PDB header:oxidoreductase
Chain: B: PDB Molecule:nadph-cytochrome p450 reductase;
PDBTitle: cypor-w677g
90c3b4uB_
not modelled 7.6 22 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase;
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
91d1eyfa_
not modelled 7.5 44 Fold:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Superfamily:Ada DNA repair protein, N-terminal domain (N-Ada 10)
Family:Ada DNA repair protein, N-terminal domain (N-Ada 10)
92d1jb0l_
not modelled 7.5 35 Fold:Photosystem I reaction center subunit XI, PsaL
Superfamily:Photosystem I reaction center subunit XI, PsaL
Family:Photosystem I reaction center subunit XI, PsaL
93c3cz6A_
not modelled 7.5 18 PDB header:protein binding
Chain: A: PDB Molecule:dna-binding protein rap1;
PDBTitle: crystal structure of the rap1 c-terminus
94c3ixzB_
not modelled 7.3 19 PDB header:hydrolase
Chain: B: PDB Molecule:potassium-transporting atpase subunit beta;
PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride
95d1k6da_
not modelled 7.3 19 Fold:NagB/RpiA/CoA transferase-like
Superfamily:NagB/RpiA/CoA transferase-like
Family:CoA transferase alpha subunit-like
96d2nsfa2
not modelled 7.3 21 Fold:SCP-like
Superfamily:SCP-like
Family:Micothiol-dependent maleylpyruvate isomerase C-terminal domain-like
97d1xe7a_
not modelled 7.2 38 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:YML079-like
98c4dppB_
not modelled 7.2 11 PDB header:lyase
Chain: B: PDB Molecule:dihydrodipicolinate synthase 2, chloroplastic;
PDBTitle: the structure of dihydrodipicolinate synthase 2 from arabidopsis2 thaliana
99d1w3ia_
not modelled 7.2 18 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase

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