 |
| Job Description | A1Y9I9 | | Confidence | 81.76% | Date | Wed Jul 10 14:16:46 BST 2013 |
| Rank | 364 | Aligned Residues | 92 |
| % Identity | 21% | Template | c4dioB_ |
| PDB info |
PDB header:oxidoreductase | Chain: B: PDB Molecule:nad(p) transhydrogenase subunit alpha part 1; |
PDBTitle: the crystal structure of transhydrogenase from sinorhizobium meliloti
|
| Resolution | 2.60 Å |
|
 |
|   |   |
98 | . | 100 | . | . | . | . | . | . | . | . | . | |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . |
| Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | P | A | C | V | L | E | L | G | T | Y | C | . |
G | Y | S | T | L | L | I | A | R | A | L | P | P | G | S | R | L | L | T | V | E | R | D | S | R | T | A | A | V | A | E | K | V | I | R | L | A | G | F | D | E | Q | M | V | E | L | I |
| Query Conservation |   |
  |
|
|   |
|
|
|
|
|
|   |   | . |
|
|
|
|
|   |
|
|   |
|
|   |   |   |
|   |
|   |
|
|
|   |   |   |   |   |
|   |
|
|
|   |   |
|   |   |
|
|
|   |
|   |   |
|   |
|
|
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
| . |
| Template Conservation |   |
  |   |   |   |
|   |
|
|
|   |
|   |
|
|   |   |
|
|   |   |   |   |   |
| . | . |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . |   |   |
|   |   |   |   |   |   | . |
| Template Sequence |   |
P | A | A | K | I | F | V | X | G | A | G | V | A | G | L | Q | A | I | A | T | A | R | R | L | . |
. |
G | A | V | V | S | A | T | D | V | R | P | A | A | K | E | Q | V | A | . |
. |
. |
. |
. |
. |
S | L | G | A | K | F | I | A | A | . |
| Template Known Secondary structure |   |
|
|
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | . | . | T |
|  |  |  |  |  |
| S |
| T | T |  |  |  |  |  |  | . | . | . | . | . | . |  | T | T |
|  |  |
|
|
| . |
| Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |
|
|
|
|
|  | . |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
195 | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | |
|
. | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | |
|
|
|
|
|
. | . | . | 240 | . | . | . | . | . | |
|   |
|   |   |
157 | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | |
. | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  | . |
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | G | S | S | E | E | V | I | P | R | L | R | A | Q | H | Q | L | N | R | A | D | L | V | L | L | A | . |
H | R | P | R | Y | Y | L | R | D | L | Q | L | L | E | A | H | A | L | L | P | H | G | A | T | V | L |
| Query Conservation |   |
  |
|
|
|   |
|   |
|   |   |
|   |   |   |   |   |   |   |   |
|
|
|
|
|
|
| . |
|   |
|   |   |
|   |   |   |
|   |
|
|
|   |   |   |
|
|   |   |
|
|
|
|
|
| Alig confidence |   |
. | . | . | . | . |
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
. | . | . | . | . |   |   |
|   |
|   |
|   |   |   | . | . | . | . | . |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |   |
|   |
|   |
|
|
|
| Template Sequence |   |
. |
. |
. |
. |
. |
A | L | V | A | E | H | I | A | K | Q | . |
. |
. |
. |
. |
D | I | V | I | T | T | A | L | I | P | G | R | P | A | P | R | L | V | T | R | E | X | L | D | S | X | K | P | G | S | V | V | V |
| Template Known Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |  | T |
| . | . | . | . | . | S |  |  |  |  |
|
|
|
| T | T | S |
|
|
|
|
| B |
|  |  |  |  |  | T | S |
| T | T |
|  |  |  |
| Template Predicted Secondary structure |   |
. | . | . | . | . |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . |
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|
|
|
|
273 | . | . | . | . | . | . | 280 | . | . | |
|
|
|
|
. | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
Phyre2 is part of Genome3D |
|