Job Description A1Y9I9 Confidence 80.89% Date Wed Jul 10 14:16:46 BST 2013 Rank 368 Aligned Residues 188 % Identity 14% Template c3s1sA_ PDB info PDB header:hydrolase, transferase Chain: A: PDB Molecule:restriction endonuclease bpusi; PDBTitle: characterization and crystal structure of the type iig restriction2 endonuclease bpusi Resolution 2.35 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		L	V	R	T	V	L	L	R	G	F	R	D	C	L	S	G	L	R	I	E	E	R	A	F	S	Y	.	V	L	T	H	A	L	P	G	D	P	G	H	I	L	T	T	L	D	H	W	S	S	C	C	E	Y	L	S	H	M	G	P	V
Query Conservation																												.
Alig confidence														.														.									.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	W	N	V	N	L	L	S	S	L	N	D	.	L	G	R	R	I	L	T	G	D	E	L	A	E	L	I	H	D	I	A	T	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	H	E	G	V	V	P	T	D	I	E
Template Known Secondary structure		T												.							S	S												T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.					B	S	S	S
Template Predicted Secondary structure														.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		257	.	.	260	.	.	.	.	.	.	.	.		.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290														.	.	.	.	.	.	.	.	.	300	.	.
		86	.	.	.	90	.	.	.	.	.	.	.			.	.	100					.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure														.	.				.	.	.	.																									.	.
Query SS confidence														.	.				.	.	.	.																									.	.
Query Sequence		K	G	Q	I	L	M	R	L	V	E	E	K	.	.	A	P	A	.	.	.	.	C	V	L	E	L	G	T	Y	C	G	Y	S	T	L	L	I	A	R	A	L	P	P	G	S	.	.	R	L	L	T	V	E	R	D	S	R	T	A	A
Query Conservation														.	.				.	.	.	.																									.	.
Alig confidence														.	.				.	.	.	.																									.	.
Template Conservation
Template Sequence		L	G	K	V	L	S	I	I	S	Q	H	I	L	G	R	P	L	T	E	D	E	V	I	S	D	P	A	A	G	S	G	N	L	L	A	T	V	S	A	G	F	N	N	V	X	P	R	Q	I	W	A	N	D	I	E	T	L	F	L	E
Template Known Secondary structure																S				T	T						T	T		T	T	S									T	S	T	T			G	G	G						S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		138	.	140	.	.	.	.	.					.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.
Predicted Secondary structure										.	.	.	.																																			.	.	.	.	.				.	.	.	.	.	.
Query SS confidence										.	.	.	.																																			.	.	.	.	.				.	.	.	.	.	.
Query Sequence		V	A	E	K	V	I	R	L	.	.	.	.	A	G	F	D	E	Q	M	V	E	L	I	A	G	S	S	E	E	V	I	P	R	L	R	A	Q	H	Q	L	N	R	A	D	L	V	.	.	.	.	.	L	L	A	.	.	.	.	.	.
Query Conservation										.	.	.	.																																			.	.	.	.	.				.	.	.	.	.	.
Alig confidence										.	.	.	.							.																		.	.	.	.							.	.	.	.	.				.	.	.	.	.	.
Template Conservation																				.																		.	.	.	.
Template Sequence		L	L	S	I	R	L	G	L	L	F	P	Q	L	V	S	S	N	N	.	A	P	T	I	T	G	E	D	V	C	S	L	N	P	E	D	F	.	.	.	.	A	N	V	S	V	V	V	X	N	P	P	Y	V	S	G	V	T	D	P	A
Template Known Secondary structure									T	T	S	T	T	T		B	T	T	B	.									G	G	G			G	G	G	G	.	.	.	.	T	T									B			S	S
Template Predicted Secondary structure																				.																		.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380		.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
																							183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.				.	.	.	210	.	.	.	.		.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.									.			.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.									.			.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	R	P	R	Y	Y	L	R	D	L	Q	L	L	E	A	H	A	L	L	P	H	G	A	T	.	.	.	V	L	A	D	H	V	L	F	.	P	G	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.									.			.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.							.	.	.									.			.
Template Conservation																																							.	.
Template Sequence		I	K	R	K	F	A	H	K	I	I	Q	L	T	G	N	R	P	Q	T	L	F	G	Q	I	G	V	E	A	L	F	L	E	L	V	T	E	L	.	.	V	Q	D	G	T	V	I	S	A	I	X	P	K	Q	Y	L	T	A	Q	G	N
Template Known Secondary structure															S	S			S	S		S	S	S															.	.	S		T	T									T							S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.			.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.
			217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	A	P	R	F	L	Q	Y	T	K	S	C	G	R	Y	R	C	R	L	H
Query Conservation		.
Alig confidence		.
Template Conservation
Template Sequence		E	S	K	A	F	R	E	F	L	V	G	N	F	G	L	E	H	I	F	L
Template Known Secondary structure											T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		476	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D