Job Description A1Y9I9 Confidence 41.40% Date Wed Jul 10 14:16:46 BST 2013 Rank 492 Aligned Residues 159 % Identity 16% Template c3evaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:rna-directed rna polymerase ns5; PDBTitle: crystal structure of yellow fever virus methyltransferase complexed2 with s-adenosyl-l-homocysteine Resolution 1.50 Å

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		47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	R	A	F	S	Y	V	L	T	H	A	L	P	G	D	P	G	H	I	L	T	T	L	D	H	W	S	S	C	C	E	Y	L	S	H	M	G	P	V	K	G	Q	I	L	M	R	L	V	E	E	K	A	P	A	C	V	L	E	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	Q	F	E	L	Y	K	R	T	D	I	V	E	V	D	R	D	T	A	R	R	H	L	A	E	G	K	V	D	T	G	V	A	V	S	R	G	T	A	K	L	R	W	F	H	E	R	G	Y	V	K	L	E	G	R	V	I	D	L	G
Template Known Secondary structure										T	T															T	T			S	S		B		S	S	T											T	T	S	S										T
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.
Predicted Secondary structure																											.	.	.	.	.	.																												.
Query SS confidence																											.	.	.	.	.	.																												.
Query Sequence		T	Y	C	G	Y	S	T	L	L	I	A	R	A	L	P	P	G	S	R	L	L	T	V	E	R	.	.	.	.	.	.	D	S	R	T	A	A	V	A	E	K	V	I	R	L	A	G	F	D	E	Q	M	V	E	L	I	A	G	.	S
Query Conservation																											.	.	.	.	.	.																												.
Alig confidence															.												.	.	.	.	.	.					.	.	.	.	.	.	.	.	.															.
Template Conservation															.																						.	.	.	.	.	.	.	.	.
Template Sequence		C	G	R	G	G	W	C	Y	Y	A	A	A	Q	.	K	E	V	S	G	V	K	G	F	T	L	G	R	D	G	H	E	K	P	M	N	.	.	.	.	.	.	.	.	.	V	Q	S	L	G	W	N	I	I	T	F	K	D	K	T	D
Template Known Secondary structure			T	T									T	S	.	T	T												T	T							.	.	.	.	.	.	.	.	.			B	T	T	G	G	G						S
Template Predicted Secondary structure															.																						.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.										.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.										.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.
Query Sequence		S	E	E	V	I	P	R	L	R	A	Q	H	Q	L	N	R	A	D	L	V	L	L	A	H	.	.	.	.	.	.	.	.	.	R	P	R	Y	Y	L	R	D	L	Q	L	L	E	A	H	A	L	L	P	H	G	A	T	V	L	A	D
Query Conservation																										.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.																.											.
Template Conservation						.	.	.	.	.	.	.	.																																					.											.
Template Sequence		I	H	R	L	.	.	.	.	.	.	.	.	E	P	V	K	C	D	T	L	L	C	D	I	G	E	S	S	S	S	S	V	T	E	G	E	R	T	V	R	V	L	D	T	V	E	K	W	.	L	A	C	G	V	D	N	F	C	V	.
Template Known Secondary structure		T	T	S	S	.	.	.	.	.	.	.	.						S											S																				.		T	T			S					.
Template Predicted Secondary structure						.	.	.	.	.	.	.	.																																					.											.
Template SS confidence
		132	.	.	.									.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	V	L	F	P	G	A	P	R	F	L	Q	Y	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	L	A	P	Y	M	P	D	V	L	E	K	L	E
Template Known Secondary structure				S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D