Job Description A1Y9I9 Confidence 99.54% Date Wed Jul 10 14:16:46 BST 2013 Rank 34 Aligned Residues 159 % Identity 14% Template c3c0kB_ PDB info PDB header:transferase Chain: B: PDB Molecule:upf0064 protein yccw; PDBTitle: crystal structure of a ribosomal rna methyltranferase Resolution 2.00 Å

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		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure
Query SS confidence
Query Sequence		M	R	L	V	E	E	K	A	P	A	C	V	L	E	L	G	T	Y	C	G	Y	S	T	L	L	I	A	R	A	L	P	P	G	S	R	L	L	T	V	E	R	D	S	R	T	A	A	V	A	E	K	V	I	R	L	A	G	F	D	E
Query Conservation
Alig confidence																															.	.
Template Conservation																															.	.
Template Sequence		L	A	T	R	R	Y	V	E	N	K	R	V	L	N	C	F	S	Y	T	G	G	F	A	V	S	A	L	X	G	.	.	G	C	S	Q	V	V	S	V	D	T	S	Q	E	A	L	D	I	A	R	Q	N	V	E	L	N	K	L	D	L
Template Known Secondary structure									T	T							T		T	T	T									T	.	.	T		S							S															T	T			G
Template Predicted Secondary structure																															.	.
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.													.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	M	V	E	L	I	A	G	S	S	E	E	V	I	P	R	L	R	A	Q	H	Q	L	N	R	A	D	L	V	L	L	A	.	.	.	.	.	.	.	.	.	.	.	.	H	R	P	R	Y	Y	L	R	D	L	Q	L	L	E	A	H
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.
Template Sequence		S	K	A	E	F	V	R	D	D	V	F	K	L	L	R	T	Y	R	D	R	G	.	.	E	K	F	D	V	I	V	X	D	P	P	K	F	V	E	N	K	S	Q	L	X	G	A	C	R	G	Y	K	D	I	N	X	L	A	I	Q	L
Template Known Secondary structure		G	G						S												T	T	.	.											S	S		S	S	T	T		S	S	S				T												T
Template Predicted Secondary structure																							.	.
Template SS confidence
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.			.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		199	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure											.																		.	.	.	.
Query SS confidence											.																		.	.	.	.
Query Sequence		A	L	L	P	H	G	A	T	V	.	L	A	D	H	V	L	F	P	G	A	P	R	F	L	Q	Y	T	.	.	.	.	K	S	C	G	R	Y	R	C	R	L	H	H	T	S	L	P	D	F	P	A	I	K	D	G	I	A	Q	L	T
Query Conservation											.																		.	.	.	.
Alig confidence		.	.								.																		.	.	.	.
Template Conservation		.	.
Template Sequence		.	.	L	N	E	G	G	I	L	L	T	F	S	C	S	G	L	X	T	S	D	L	F	Q	K	I	I	A	D	A	A	I	D	A	G	R	D	V	Q	F	I	E	Q	F	R	Q	A	A	D	H	P	V	I	A	T	Y	P	E	G	L
Template Known Secondary structure		.	.														T	T																		T													T	T	S				T	T		G	G	G
Template Predicted Secondary structure		.	.
Template SS confidence
				329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.
		254	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		387	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D