Job Description A1Y9I9 Confidence 99.34% Date Wed Jul 10 14:16:46 BST 2013 Rank 77 Aligned Residues 110 % Identity 20% Template c2q41D_ PDB info PDB header:transferase Chain: D: PDB Molecule:spermidine synthase 1; PDBTitle: ensemble refinement of the protein crystal structure of spermidine2 synthase from arabidopsis thaliana gene at1g23820 Resolution 2.70 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.			.	.	.	.	.	.	150
Predicted Secondary structure																																																					.	.
Query SS confidence																																																					.	.
Query Sequence		L	V	E	E	K	A	P	A	C	V	L	E	L	G	T	Y	C	G	Y	S	T	L	L	I	A	R	A	L	P	P	G	S	R	L	L	T	V	E	R	D	S	R	T	A	A	V	A	E	K	V	I	.	.	R	L	A	G	F	D	E
Query Conservation																																																					.	.
Alig confidence																													.																								.	.
Template Conservation																													.
Template Sequence		L	C	S	I	P	N	P	K	K	V	L	V	I	G	G	G	D	G	G	V	L	R	E	V	A	R	H	.	A	S	I	E	Q	I	D	X	C	E	I	D	K	X	V	V	D	V	S	K	Q	F	F	P	D	V	A	I	G	Y	E	D
Template Known Secondary structure			T	T	S	S	S								S		S	S	S							T	T		.	T	T																						T	T	T	G	G	G	T	T
Template Predicted Secondary structure																													.
Template SS confidence
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.								.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.
Query Sequence		Q	M	V	E	L	I	A	G	S	S	E	E	V	I	P	R	L	R	A	Q	H	Q	L	N	R	A	D	L	V	L	L	A	H	R	P	R	Y	Y	.	.	.	.	.	.	.	L	R	D	L	Q	L	L	E	A	H	A	L	L	P	H
Query Conservation																																								.	.	.	.	.	.	.
Alig confidence																					.	.	.	.																.	.	.	.	.	.	.											.	.
Template Conservation																					.	.	.	.																																	.	.
Template Sequence		P	R	V	N	L	V	I	G	D	G	V	A	F	L	K	N	A	A	E	.	.	.	.	G	S	Y	D	A	V	I	V	D	S	S	D	P	I	G	P	A	K	E	L	F	E	K	P	F	F	Q	S	V	A	R	A	.	.	L	R	P
Template Known Secondary structure		T	T						S								S	S		S	.	.	.	.	S												S	S	S	G	G	G	G	G	G	S											.	.
Template Predicted Secondary structure																					.	.	.	.																																	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.
		204	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	T	V	L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	G	V	V	C	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D