Job Description A1Y9I9 Confidence 98.94% Date Wed Jul 10 14:16:46 BST 2013 Rank 179 Aligned Residues 103 % Identity 13% Template c2cmgA_ PDB info PDB header:transferase Chain: A: PDB Molecule:spermidine synthase; PDBTitle: crystal structure of spermidine synthase from helicobacter2 pylori Resolution 2.0 Å

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		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	E	K	A	P	A	C	V	L	E	L	G	T	Y	C	G	Y	S	T	L	L	I	A	R	A	L	P	P	G	S	R	L	L	T	V	E	R	D	S	R	T	A	A	V	A	E	K	V	I	R	L	A	G	F	D	E	Q	M
Query Conservation
Alig confidence																											.	.	.																								.	.
Template Conservation																											.	.	.																								.	.
Template Sequence		G	C	T	K	K	E	L	K	E	V	L	I	V	D	G	F	D	L	E	L	A	H	Q	L	F	.	.	.	K	Y	D	T	H	I	D	F	V	Q	A	D	E	K	I	L	D	S	F	I	S	F	F	.	.	P	H	F	H	E	V	K
Template Known Secondary structure			T	T	S	S									S	S										T	.	.	.	T	S	S								S						G	G	G	T	T	T	S	.	.	T	T
Template Predicted Secondary structure																											.	.	.																								.	.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.				.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.			.	.	.	.	.	120	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	L	I	A	G	S	S	E	E	V	I	P	R	L	R	A	Q	H	Q	L	N	R	A	D	L	V	L	L	A	H	R	P	R	Y	Y	L	R	D	L	Q	L	L	E	A	H	A	L	L	P	H	G	A	T	V	L	A
Query Conservation
Alig confidence																.	.	.	.	.																	.	.										.	.
Template Conservation																.	.	.	.	.																	.	.										.	.
Template Sequence		N	N	K	N	F	T	H	A	K	Q	L	L	D	L	.	.	.	.	.	D	I	K	K	Y	D	L	I	F	C	L	Q	E	P	D	I	.	.	H	R	I	D	G	L	K	R	M	.	.	L	K	E	D	G	V	F	I	S
Template Known Secondary structure		T		T	T					S	S	G	G	G	S	.	.	.	.	.											S	S					.	.								T	T	.	.
Template Predicted Secondary structure																.	.	.	.	.																	.	.										.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.			.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions	Phyre2 is part of Genome3D