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Job Description | A2A5K6 | Confidence | 20.19% | Date | Tue Jul 30 13:04:49 BST 2013 |
Rank | 416 | Aligned Residues | 79 |
% Identity | 19% | Template | c1i3qI_ |
PDB info |
PDB header:transcription | Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd |
PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution
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Resolution | 3.10 Å |
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524 | . | . | . | . | . | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | |
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. | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
Y | K | C | D | E | C | S | Y | T | S | V | Y | R | K | D | V | I | R | H | A | A | V | H | S | Q | D | R | K | K | R | P | D | P | T | P | . |
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K | L | S | S | F | P | C | P | V | C | G | R | V | Y | P | M | Q | K |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
F | E | C | R | T | C | S | Y | V | E | E | A | G | S | P | L | V | Y | R | H | E | L | I | T | N | I | G | E | T | A | G | V | V | Q | D | I | G | S | D | P | T | L | P | R | S | D | R | E | C | P | K | C | H | S | R | E | N | V | F | F |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . |
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577 | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
R | L | T | Q | H | M | K | T | H | S | T | E | K | P | H | M | C | D | K | C | G | K | S | F | K | K |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
Q | S | Q | Q | R | R | K | D | T | S | M | V | L | F | F | V | C | L | S | C | S | H | I | F | T | S |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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87 | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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Phyre2 is part of Genome3D |
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