Return to main results Retrieve Phyre Job Id

Job DescriptionA2A5K6
Confidence67.98%DateTue Jul 30 13:04:49 BST 2013
Rank300Aligned Residues122
% Identity15%Templatec2jtnA_
PDB info PDB header:protein binding/transcriptionChain: A: PDB Molecule:lim domain-binding protein 1, lim/homeobox PDBTitle: nmr solution structure of a ldb1-lid:lhx3-lim complex
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   992.......1000.........1010.........1020.........1030.........1040.........1050.
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Query Sequence  PPPAASHTLGLVVPQSPPSAAASSTKKFSCKVCSEAFPSRAEMESHKRAHAGPAAFKCPD
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Template Sequence  TQFDAANGIDDEGGSGGHMGSGGTPEIPMCAGCDQHILDRFILKALDRHWH. SKCLKCSD
Template Known Secondary structure  S
TTSSS
SSSS
SSSSS






S

B
BTSSSB


STT
.SSTTS
TT
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   34.....40.........50.........60.........70.........80.... .....90..
 
   1052...... .1060.........1070.........1080.........1090.........1100.......
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Query Sequence  CPFSARQ. . . . WPEVRAHMAQHSSLRPHQCNQCSFASKNKKDLRRHMLTHTNEKPFSCHV
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Template Conservation 
   
            
   
       
  
   
        
    

  

 
  
Template Sequence  CHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYHLHCFACVV
Template Known Secondary structure  T



SS

TT
TTS


TTT




SS



TT

TTT


TT
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   93......100.........110.........120.........130.........140.........150..
 
   1108.1110....
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Query Sequence  CGQRFNR
Query Conservation 
   
  
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Template Conservation 
   
  
Template Sequence  CKRQLAT
Template Known Secondary structure  T




T
Template Predicted Secondary structure 






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   153......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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