 |
Job Description | A2A5K6 | Confidence | 25.78% | Date | Tue Jul 30 13:04:49 BST 2013 |
Rank | 390 | Aligned Residues | 51 |
% Identity | 24% | Template | c2eciA_ |
PDB info |
PDB header:metal binding protein | Chain: A: PDB Molecule:tnf receptor-associated factor 6; |
PDBTitle: solution structure of the ring domain of the human tnf2 receptor-associated factor 6 protein
|
Resolution | UNK |
|
 |
  |   |
1044 | . | . | . | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | . | . | . | . | . | . | . | 1090 | . | . | . | . | . | . | . | . | . | 1100 | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | A | A | F | K | C | P | D | C | P | F | S | A | R | Q | W | P | E | V | R | A | H | M | A | Q | H | S | S | L | R | P | H | Q | C | N | Q | C | S | F | A | S | K | N | K | K | D | L | R | R | H | M | L | T | H | T | N | E | K | P | F |
Query Conservation |   |
  |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
| . |
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
Template Conservation |   |
  |   |   |   |   |
|   |
|
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|   |   |   | . |
|
|
|   |
|
| . |   |   |
|
|   |   |   |
|   |   |   |   |   |   | . | . | . |
Template Sequence |   |
E | S | K | Y | E | C | P | I | C | L | M | A | L | R | E | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
A | V | Q | T | P | . |
C | G | H | R | F | C | . |
K | A | C | I | I | K | S | I | R | D | A | G | H | K | . |
. |
. |
Template Known Secondary structure |   |
|
| S |
|
|
| T | T | T |
| S | S |
| S | S | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|  |  |  | T | . | T | T |  |  |  |
| . |  |  |  |  |  |  |  |  |  |  | T |
| S | S | . | . | . |
Template Predicted Secondary structure |   |
|  |  |  |
|
|
|  |  |
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  | . |
|
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . | . | . |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
23 | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | 40 | . | . | |
. | . | . | . | . | . | |
. | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | |
|
|
  |
  |   |
1104 | . | . | . | . | . | 1110 | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | C | H | V | C | G | Q | R | F | N | R | N |
Query Conservation |   |
  |
|   |   |
|   |   |   |
|   |   |   |
Alig confidence |   |
. |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
. |
|
|   |
|
|   |   |
|   |   |   |
Template Sequence |   |
. |
C | P | V | D | N | E | I | L | L | E | N |
Template Known Secondary structure |   |
. |
| T | T | T |
|
|
|
|
| S | T |
Template Predicted Secondary structure |   |
. |
|  |  |
|
|  |  |
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
|
63 | . | . | . | . | . | . | 70 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|