 |
Job Description | A2A5K6 | Confidence | 20.71% | Date | Tue Jul 30 13:04:49 BST 2013 |
Rank | 413 | Aligned Residues | 37 |
% Identity | 22% | Template | d1ynjd1 |
SCOP info | beta and beta-prime subunits of DNA dependent RNA-polymerase
| beta and beta-prime subunits of DNA dependent RNA-polymerase
| RNA-polymerase beta-prime
|
Resolution | 3.20 |
|
  |   |
1073 | . | . | . | . | . | . | 1080 | . | . | . | . | . | . | . | . | . | 1090 | . | . | . | . | . | . | . | . | . | 1100 | . | . | . | . | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . |
Predicted Secondary structure |   |
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | P | H | Q | C | N | Q | C | S | F | A | S | K | N | K | K | D | L | R | R | H | M | L | T | H | T | N | E | K | P | F | S | C | H | V | C | G | Q | R | F | N | R | N | G | H | L | K | F | H | I |
Query Conservation |   |
  |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
| . |   |
|
|
|
|
|   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |
|
|   |   |
|
|
|
|   |
|   |
|   |
|
|
|
|
|
|
Template Sequence |   |
K | D | Y | E | C | . |
A | C | G | K | Y | K | R | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | R | F | E | G | K | V | C | E | R | C | G | V | E | V | T | R | S | I | V | R | R | Y | R | M |
Template Known Secondary structure |   |
S | S | S | S |
| . | S | S |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | S | S | S |
|
|
|
|
| S | S | S |
|
|
|
| S |
| G | G | G | G | G | T |
|
|
Template Predicted Secondary structure |   |
|
|
|
|
| . |
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
54 | . | . | . | . | |
. | 60 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
Phyre2 is part of Genome3D |
|