Return to main results Retrieve Phyre Job Id

Job DescriptionA2A5K6
Confidence92.23%DateTue Jul 30 13:04:49 BST 2013
Rank219Aligned Residues51
% Identity24%Templatec2iykB_
PDB info PDB header:hydrolaseChain: B: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1
Resolution2.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1047..1050.........1060.........1070.........1080.... .....1090...... .
Predicted Secondary structure 
























......

...
Query SS confidence 





































. . . . . .











. .
.
Query Sequence  FKCPDCPFSARQWPEVRAHMAQHSSLRPHQCNQCSFAS. . . . . . KNKKDLRRHMLT. . H.
Query Conservation    
  
         
  
   
       
  
   
......     
  
   ..
.
Alig confidence 






..............
















......











..
.
Template Conservation   

 


..............      

 
  
 






     



 

  
 
 
Template Sequence  HACSYCG. . . . . . . . . . . . . . IHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
Template Known Secondary structure  TS
TTT
..............


TTTTTTTS

TTSSS
TT

Template Predicted Secondary structure 






..............






















Template SS confidence 



























































   11...... ..20.........30.........40.........50......
 
   1098.1100.........1110.
Predicted Secondary structure  .........











Query SS confidence  . . . . . . . . .













Query Sequence  . . . . . . . . . TNEKPFSCHVCGQR
Query Conservation  .........       
  
   
Alig confidence  .........













Template Conservation   
 
          



 
   
Template Sequence  EVTLHKDGPLGETVLECYNCGCR
Template Known Secondary structure 

TTSTT
S
B


TTT


Template Predicted Secondary structure 














Template SS confidence 






















   57..60.........70.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D