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Job Description | A2A5K6 | Confidence | 92.23% | Date | Tue Jul 30 13:04:49 BST 2013 |
Rank | 219 | Aligned Residues | 51 |
% Identity | 24% | Template | c2iykB_ |
PDB info |
PDB header:hydrolase | Chain: B: PDB Molecule:regulator of nonsense transcripts 1; |
PDBTitle: crystal structure of the upf2-interacting domain of2 nonsense mediated mrna decay factor upf1
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Resolution | 2.95 Å |
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1047 | . | . | 1050 | . | . | . | . | . | . | . | . | . | 1060 | . | . | . | . | . | . | . | . | . | 1070 | . | . | . | . | . | . | . | . | . | 1080 | . | . | . | . | |
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Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
F | K | C | P | D | C | P | F | S | A | R | Q | W | P | E | V | R | A | H | M | A | Q | H | S | S | L | R | P | H | Q | C | N | Q | C | S | F | A | S | . |
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K | N | K | K | D | L | R | R | H | M | L | T | . |
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Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
H | A | C | S | Y | C | G | . |
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I | H | D | P | A | C | V | V | Y | C | N | T | S | K | K | W | F | C | N | G | R | G | N | T | S | G | S | H | I | V | N | H | L | V | R | A | K | C | K |
Template Known Secondary structure |   |
T | S |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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11 | . | . | . | . | . | . | |
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. | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . |
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1098 | . | 1100 | . | . | . | . | . | . | . | . | . | 1110 | . |
Predicted Secondary structure |   |
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Query SS confidence |   |
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Query Sequence |   |
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T | N | E | K | P | F | S | C | H | V | C | G | Q | R |
Query Conservation |   |
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Alig confidence |   |
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Template Conservation |   |
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Template Sequence |   |
E | V | T | L | H | K | D | G | P | L | G | E | T | V | L | E | C | Y | N | C | G | C | R |
Template Known Secondary structure |   |
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Template Predicted Secondary structure |   |
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Template SS confidence |   |
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57 | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
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No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
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Phyre2 is part of Genome3D |
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