Return to main results Retrieve Phyre Job Id

Job DescriptionA2A5K6
Confidence93.94%DateTue Jul 30 13:04:49 BST 2013
Rank201Aligned Residues51
% Identity24%Templatec2wjyA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:regulator of nonsense transcripts 1; PDBTitle: crystal structure of the complex between human nonsense2 mediated decay factors upf1 and upf2 orthorhombic form
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1047..1050.........1060.........1070.........1080.... .....1090...... ..
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Query Sequence  FKCPDCPFSARQWPEVRAHMAQHSSLRPHQCNQCSFAS. . . . . . KNKKDLRRHMLT. . HT
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Template Sequence  HACSYCGIHDPACVV. . . . . . . . . . . . . . YCNTSKKWFCNGRGNTSGSHIVNHLVRAKCK
Template Known Secondary structure  TS
TTT



GGG..............TTTTS

TTSSS
T

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   121........130..... ....140.........150.........160......
 
   10991100.........1110.
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Query Sequence  . . . . . . . . . . NEKPFSCHVCGQR
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Template Sequence  EVTLHKDGPLGETVLECYNCGCR
Template Known Secondary structure 

TTSTT
S
B


TTT


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   167..170.........180.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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