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Job DescriptionA1YIY0
Confidence99.84%DateTue Jul 30 13:19:15 BST 2013
Rank116Aligned Residues170
% Identity11%Templatec1qseD_
PDB info PDB header:immune systemChain: D: PDB Molecule:protein (hman t-cell receptor); PDBTitle: structure of human a6-tcr bound to hla-a2 complexed with2 altered htlv-1 tax peptide v7r
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.... .....60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLF. . . . . . . . . . . . . . . . . . . YTFYKNN
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Template Sequence  NSGPLSVP. . . EGAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTA
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TT


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   6...10... ......20.........30.........40.........50.........60..
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHE
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Template Sequence  QLNKASQYVSLLIRDSQPSDSATYLCAVTTDSWGKLQFGAGTQVVVTPDIQNPDPAV. . .
Template Known Secondary structure  TTTT
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GGG
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   65....70.........80.........90.........100.........110.........120.
 
   122.......130.........140.........150.........160 .........170.........
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Query Sequence  ATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLA. . PSGRAASLLASVKAEWSTK
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Template Sequence  YQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKS
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SS
S
S

TT





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GGGT

T
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   126...130.........140.........150.........160.........170.........180.....
 
   180.........190......
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Query Sequence  NYSCEAKNNISREISEL
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Template Sequence  DFACANAFNNSIIPEDT
Template Known Secondary structure  T

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   186...190.........200..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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