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Job DescriptionA1YIY0
Confidence99.85%DateTue Jul 30 13:19:15 BST 2013
Rank100Aligned Residues180
% Identity10%Templatec3sgjB_
PDB info PDB header:immune systemChain: B: PDB Molecule:human fc fragment; PDBTitle: unique carbohydrate-carbohydrate interactions are required for high2 affinity binding between fcgiii and antibodies lacking core fucose
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30. ........40.........50.........60........
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Query Sequence  QFPNPELTEFTNS. . . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRS. . . . .
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Template Sequence  LGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVS. HEDPEVKFNWYVDGVEVHNAKTKPRE
Template Known Secondary structure  GG





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   235....240.........250.........260....... ..270.........280.........290...
 
   6970.........80.........90.........100.........110.........
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Query Sequence  . . . . . . . . . PHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  EQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPR. . EPQVYTL
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   294.....300.........310.........320.........330.........340.... .....350.
 
   120.........130.........140.... .....150.........160..... ....
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRA. . . . . . . . . ASLL
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Template Sequence  PPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLT
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GGGGGSSBSS

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   352.......360.........370.........380.........390.........400.........410.
 
   170.........180.........190.........200.
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Query Sequence  ASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  VDKSRWQQGNVFSCSVMHEALHNHYTQKSLSL
Template Known Secondary structure  T


TTSGGG

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   412.......420.........430.........440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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