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Job DescriptionA1YIY0
Confidence99.84%DateTue Jul 30 13:19:15 BST 2013
Rank121Aligned Residues171
% Identity13%Templatec3bisA_
PDB info PDB header:immune systemChain: A: PDB Molecule:programmed cell death 1 ligand 1; PDBTitle: crystal structure of the pd-l1
Resolution2.64 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.....
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRAR
Template Known Secondary structure  TTS




SS

TTS
TTTT
GGGS
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STT
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   27..30.........40.........50.........60.........70.........80......
 
   66...70.........80.........90.........100.........110.........
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Query Sequence  . . . . . . DRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  LLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQRI. . . . .
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TTTSS

GGG
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   87..90.........100.........110.........120.........130.........140.
 
   120.........130.........140.........150.........160..... ....170...
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRA. . . . . . ASLLASVK
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Template Sequence  . . LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI
Template Known Secondary structure  ..TTTTBS

TT




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   142.......150.........160.........170.........180.........190.........
 
   174.....180.........190.........200.......
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Query Sequence  AEWSTKNYSCEAKNNISREISELKKFPLVVSGTA
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Template Sequence  NTTTNEIFYCTFRRLDPEEN. . . HTAELVIPELP
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TTTT...




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   200.........210......... 220.........230
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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