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Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank335Aligned Residues162
% Identity15%Templatec1seqH_
PDB info PDB header:immune systemChain: H: PDB Molecule:monoclonal antibody mnac13; PDBTitle: fab mnac13
Resolution1.78 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VQPGGSLKLSCAASGFTFSTYT. . . MSWARQTPEKKLEWVAYISKGGGSTYYPDTVKGRF
Template Known Secondary structure 
TT

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GGGS
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   12.......20.........30... ......40.........50.........60........
 
   60.........70.........80.........90.........100. ........110.....
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Query Sequence  NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSG. . . . YLDIQFWTPVSHPV
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Template Conservation              
 
  
   
 
 
 
                                
Template Sequence  TISRDNAKNTLYLQMSSLKSEDTALYYCARGAMFGNDFKYPMDRWGQGTSVTVSSAATTP
Template Known Secondary structure  GGGT
S

GGG


TT
SBS




SS

B
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   68.70.........80.........90.........100.........110.........120.......
 
   116...120.........130.........140.... .....150.........160.. .....
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Query Sequence  LTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPS. . . . . . . GRAAS
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Template Conservation                                 
 
                   
    
 
Template Sequence  PSVYPLAPGSQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLKSDLYTLSSS
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SBSS

GGGTB
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   119120.........130.........140.........150.........160.........170........
 
   168.170.........180.........190.....
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Query Sequence  LLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  VTV. PSSVWPSETVTCNVAHPASSTTVD
Template Known Secondary structure  .TTTTTTS

GGGT
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   181.. ......190.........200.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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