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Job DescriptionA1YIY0
Confidence99.71%DateTue Jul 30 13:19:15 BST 2013
Rank363Aligned Residues169
% Identity10%Templatec3ntcH_
PDB info PDB header:immune systemChain: H: PDB Molecule:fab heavy chain; PDBTitle: crystal structure of kd-247 fab, an anti-v3 antibody that inhibits2 hiv-1 entry
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KKPGASVKVSCKASGYTFTNSW. . . IGWFRQAPGQGLEWIGDIYPGGGYTNYNEIFKGKA
Template Known Secondary structure 
TT

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GGGS...TTTTTTT
GGGBTT
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Query Sequence  NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQF. WTPVSHPVLTL
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Template Sequence  TMTADTSTNTAYMELSSLRSEDTAVYYCSRGIPGYAMDYWGQGTLVTVSSASTKGPSVFP
Template Known Secondary structure  TTTT
S

GGG

TTS

BS




SS

B

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   68.70.........80.........90.........100.........110.........120.......
 
   119120.........130.........140.........150.........160.. .......
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Query Sequence  QHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPS. . . . . . . . . GRAASLL
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Template Sequence  LAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVT
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TTSTTBSS

GGGTB
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   124.....130.........140.........150.........160.........170.........180...
 
   170.........180.........190.........200.....
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Query Sequence  ASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  V. PSSSLGTQTYICNVNHKPSN. . . TKVDKKVEPKS
Template Known Secondary structure  .STTTTT

GGGT...



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   184 .....190.........200.... .....210.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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