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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank245Aligned Residues161
% Identity12%Templatec3r06D_
PDB info PDB header:immune systemChain: D: PDB Molecule:anti-mouse cd3epsilon antibody 2c11 fab heavy chain; PDBTitle: crystal structure of anti-mouse cd3epsilon antibody 2c11 fab fragment
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GLVQPGKSLKLSCEASGFTFSGYG. . . MHWVRQAPGRGLESVAYITSSSINIKYADAVKG
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GGGS
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   10.........20.........30... ......40.........50.........60......
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  RFTVSRDNAKNLLFLQMNILKSEDTAMYYCARFDWDKNYWGQGTMVTVSSAKTTAPSVYP
Template Known Secondary structure  TTTTT
S

GGG

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B

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   66...70.........80.........90.........100.........110.........120.....
 
   118.120.........130......... 140.........150.........160..... ....170
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGRA. . . . . . ASLLA
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Template Sequence  LAP. . . . ACTTNTVTLGCLVKGYFPEPVTVIWNSGALTSGVHTFPSVLHSGLYSLSSSVT
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GGGT

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   124.. ...130.........140.........150.........160.........170.........
 
   171........180.........190.....
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Query Sequence  SVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  VPSSTWPSQTVTCNVAHPASSTTVD
Template Known Secondary structure  GGGTTTS

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   193......200.........210.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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