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Job DescriptionA1YIY0
Confidence99.87%DateTue Jul 30 13:19:15 BST 2013
Rank76Aligned Residues163
% Identity13%Templatec2v5rB_
PDB info PDB header:cell adhesionChain: B: PDB Molecule:dscam; PDBTitle: structural basis for dscam isoform specificity
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60........ .70........
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Query Sequence  LTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRS. . . . . . PHSVFSAEAK
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Template Sequence  HQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV
Template Known Secondary structure  TT





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   222.......230.........240.........250.........260.........270.........280.
 
   7980.........90.........100.........110.........120.........130........
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Query Sequence  EENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAH
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Template Sequence  VEDSGKYLCVVNNSVGGESVETVLTVTA. . . . . . PLSAKIDPPTQTVDFGRPAVFTCQYT
Template Known Secondary structure  GGG
TTB......




SB



TT



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   282.......290.........300......... 310.........320.........330.....
 
   139140.........150.........160.........170.........180.........190........
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Query Sequence  QGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKK
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Template Sequence  GNPI. KTVSWMKDGKAIGH. . . . . . SESVLRIESVKKEDKGMYQCFVRNDRESAEAS. AE
Template Known Secondary structure 
B

.S


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SSSB

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   336... 340.........350... ......360.........370.........380..... ..
 
   199200.
Predicted Secondary structure 
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Query Sequence  FPL
Query Conservation 
 
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Template Conservation 
 
Template Sequence  LKL
Template Known Secondary structure 


Template Predicted Secondary structure 
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   388.390
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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