Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.71%DateTue Jul 30 13:19:15 BST 2013
Rank361Aligned Residues158
% Identity16%Templatec2w65A_
PDB info PDB header:immune systemChain: A: PDB Molecule:anti-citrullinated collagen type ii fab acc4; PDBTitle: anti citrullinated collagen type 2 antibody acc4 in complex2 with a citrullinated peptide
Resolution2.21 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........
Predicted Secondary structure 









..............................
Query SS confidence 





























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    

  


 
     
             ..............................
Alig confidence 





















...




..............................
Template Conservation 
  
  
 
 
 
         ...
 
 
                            
 
Template Sequence  KKPGETVKISCKASGYTFTDYS. . . IHWVKQAPGKGLKWMGWINTETGEPTYTDDFKGRF
Template Known Secondary structure 
TT

SS
GGGS
...
TTS


TTT


GGGSSS
Template Predicted Secondary structure 









...



















Template SS confidence 



























































   12.......20.........30... ......40.........50.........60........
 
   60.........70.........80.........90.........100.........110.........
Predicted Secondary structure 

























Query SS confidence 



























































Query Sequence  NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
Query Conservation              
 
  
   
 
 
 
 
 
                            
Alig confidence 
















































.....





Template Conservation              
 
      
 
 
 
 
                   .....      
Template Sequence  AFSLESSASTAFLQINNLKNEDTATYFCARATTATELAYWGQGTLVTVS. . . . . AAKTTP
Template Known Secondary structure  GGGT
S

GGG


SS
SS




.....



B
Template Predicted Secondary structure 




















.....





Template SS confidence 



























































   6970.........80.........90.........100.........110....... ..120...
 
   120.........130.........140.... .....150.........160... ......170..
Predicted Secondary structure 













.






......
Query SS confidence 
























.


















. . . . . .








Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . RAASLLASV
Query Conservation       
  
    
 
         .   
 
 
           ......    
 
  
Alig confidence 
























.


















......








Template Conservation                             
 
                        
 
 
 
Template Sequence  PSVYPLAPGSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP
Template Known Secondary structure 




BSS

GGGTB
S


TT
Template Predicted Secondary structure 


























Template SS confidence 



























































   124.....130.........140.........150.........160.........170.........180...
 
   173......180.........190.....
Predicted Secondary structure 







Query SS confidence 






















Query Sequence  KAEWSTKNYSCEAKNNISREISE
Query Conservation 
   
 
 
 
 
 
  
   
 
Alig confidence 






















Template Conservation      
 
 


 
 
        
Template Sequence  SSTWPSETVTCNVAHPASSTKVD
Template Known Secondary structure  TTTTTTS

GGGT
Template Predicted Secondary structure 











Template SS confidence 






















   190.........200.........210..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D