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Job DescriptionA1YIY0
Confidence99.73%DateTue Jul 30 13:19:15 BST 2013
Rank345Aligned Residues158
% Identity13%Templatec1bwmA_
PDB info PDB header:immune systemChain: A: PDB Molecule:protein (alpha-beta t cell receptor (tcr) (d10)); PDBTitle: a single-chain t cell receptor
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KVAVTGGKVTLSCNQTNNHNN. . . . . . MYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGY
Template Known Secondary structure 

B
TT



SS
S......TTT


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SSS

S
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   11........20.........30. ........40.........50.........60....
 
   62.......70.........80.........90.........100........
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . .
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Template Sequence  KASRPSQENFSLILELATPSQTSVYFCASGGQGRAEQFFGPGTRLTVLGSDYKDDDDKRS
Template Known Secondary structure 
SSSSS


TTT

SSS








BS


SSTTSS
S
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   66...70.........80.........90.........100.........110.........120.....
 
   109110.........120.........130.........140.........150
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Query Sequence  . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYI. . . . . . .
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Template Sequence  GGGGSGGGGSGGSGAQQQVRQSPQSLTVWEGETTILNCSYEDSTFDYFPWYRQFPGKSPA
Template Known Secondary structure 

SSS

S
S

S









S

STT





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   213......220.........230.........240.........250.........260.........270..
 
   151........160.........170.........180.........190.
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Query Sequence  . . . . . . . . . . . . NGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISR
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Template Conservation                               
 
  
   


 
 
 


  
 
Template Sequence  LLIAISLVSNKKEDGRFTIFFNKREKKLSLHITDSQPGDSATYFCAATGSFNK
Template Known Secondary structure 




SSSSSSSTTTT
S

SSS


B
SSSS
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   345....350.........360.........370.........380.........390.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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