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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank206Aligned Residues174
% Identity16%Templatec3tt3L_
PDB info PDB header:transport proteinChain: L: PDB Molecule:mouse monoclonal 1gg1 fab fragment, heavy chain; PDBTitle: crystal structure of leut in the inward-open conformation in complex2 with fab
Resolution3.22 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPTYLAVS. . . LGQRATISCRASESV. DTYDNSFIHWYQQKPGQPPKLLIYRASNLESGI
Template Known Secondary structure  S
S...TTS
SS

.BSSS
B

TTS


TTT
TTS
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   7..10.... .....20......... 30.........40.........50.........60..
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PARFSGSGSRTDFTLTINPVETDDVATYYCQQSNEDPLTFG. SGTKLEIKRADAAPTVSI
Template Known Secondary structure 
TT
SS
SS

GGG
S
SSSS

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B

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   63......70.........80.........90.........100... ......110.........120.
 
   118.120.........130.........140.........150.........160.... ..
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . . AA
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Template Sequence  FPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS
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TT
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   122.......130.........140.........150.........160.........170.........180.
 
   167..170.........180.........190.........200..
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Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  TLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFN
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   182.......190.........200...... ...210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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