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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank243Aligned Residues169
% Identity14%Templatec1svzB_
PDB info PDB header:immune systemChain: B: PDB Molecule:single-chain fv fragment 1696; PDBTitle: crystal structure of the single-chain fv fragment 1696 in2 complex with the epitope peptide corresponding to n-3 terminus of hiv-2 protease
Resolution1.89 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60....
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVI. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSG
Template Known Secondary structure 
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TTS



TTS

TTT
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TT
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   10.........20.........30.........40.........50.........60.........
 
   65....70.........80.........90.........100.........110.........120...
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Query Sequence  . QDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  SGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKEVQLQQSG. . . . . . . PE
Template Known Secondary structure  TTSS

GGG

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   70.........80.........90.........100.........110.........120 ..
 
   124.....130.........140.........150 .......
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Query Sequence  NLAVGDKVEFLCEAHQGSLPIFYSFYI. . . . . . . . . . . . . . . . . . . . . . . . . . NGEILGK
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Template Sequence  LKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAF
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TT

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TTTS

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TTT


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   138.140.........150.........160.........170.........180.........190.......
 
   158.160.........170.........180.........190...... ...200..
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Query Sequence  PLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISEL. . . . KKFPLV
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Template Conservation           

 
  
   
 
 
 
 
              

   
 
Template Sequence  SLDTSTSTAFLQINNLKNEDTATYFCVRDRHDYGEIFTYWGQGTTVTVS
Template Known Secondary structure  GGGT
S

GGG
SGGGT



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   198.200.........210.........220.........230.........240......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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