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Job DescriptionA1YIY0
Confidence99.77%DateTue Jul 30 13:19:15 BST 2013
Rank292Aligned Residues156
% Identity14%Templatec1nfdD_
PDB info PDB header:complex (immunoreceptor/immunoglobulin)Chain: D: PDB Molecule:n15 alpha-beta t-cell receptor; PDBTitle: an alpha-beta t cell receptor (tcr) heterodimer in complex with an2 anti-tcr fab fragment derived from a mitogenic antibody
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HIIKEKGGRSVLTCIPISGHSN. . . . . . VVWYQQTLGKELKFLIQHYEKVERDKGFLPSR
Template Known Secondary structure  TT


TT

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TT

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TT
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   10.........20.........30. ........40.........50.........60...
 
   62.......70.........80.........90..... ....100.........110.....
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Query Sequence  . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGL. . . . IQKKSGYLDIQFWTPVSHPV
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Template Sequence  FSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKV
Template Known Secondary structure 

SS

S

GGG
SSTTS


S
S
GGG



B
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   65....70.........80.........90.........100.........110.........120....
 
   116...120.........130.........140.... .....150.........160....
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Query Sequence  LTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . .
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Template Sequence  SLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYS
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TSSS


TT
TT
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TT
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   128.130.........140.........150.........160.........170.........180.......
 
   165....170.........180 ........
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Query Sequence  . AASLLASVKAEWSTKN. YSCEAKNN
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Template Sequence  LSSRLRVSATFWHNPRNHFRCQVQFH
Template Known Secondary structure 
TT


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   192.......200.........210.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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