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Job DescriptionA1YIY0
Confidence99.72%DateTue Jul 30 13:19:15 BST 2013
Rank355Aligned Residues169
% Identity10%Templatec3auvF_
PDB info PDB header:immune systemChain: F: PDB Molecule:sc-dsfv derived from the g6-fab; PDBTitle: predicting amino acid preferences in the complementarity determining2 regions of an antibody-antigen recognition interface
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50...... ...60..
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYT. . . . . . . . . . . . . . . . . . FYKNNH
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Template Sequence  SPSSLS. . . ASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFS
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TT

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TTS

TTT
TT

TT
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   18.20... ......30.........40.........50.........60.........70....
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
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Template Sequence  GSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIVQLVESGGGLVQPGGSL
Template Known Secondary structure  TTSS

GGG

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TT

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   75....80.........90.........100.........110.........120.........130....
 
   123.. ....130.........140.........150 .........160.....
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Query Sequence  TNL. . . . . . AVGDKVEFLCEAHQGSLPIFYSFYI. . . . . . . . . . . NGEILGKPLAPSGRA
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Template Sequence  RLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNT
Template Known Secondary structure  SS
GGGS
TT


GGG


TTTTTTGGGT
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   153......160.........170.........180.........190.........200.........210..
 
   166...170.........180.........190..
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISRE
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Template Sequence  AYLQMNSLRAEDTAVYYCARFVFFLPY
Template Known Secondary structure 
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GGG

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   213......220.........230.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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