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Job DescriptionA1YIY0
Confidence99.75%DateTue Jul 30 13:19:15 BST 2013
Rank320Aligned Residues175
% Identity15%Templatec1orqA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:6e1 fab light chain; PDBTitle: x-ray structure of a voltage-dependent potassium channel in complex2 with an fab
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23...... 30.........40.........50.........60
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Query Sequence  PELTEFT. . . . NSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . .
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Template Sequence  NVLTQSPAIMSPSPGEKVTMTCRARSSVSSSYLH. . . . WYQQKSGASPKLWIYSTSNLAS
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SS



TT


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GGG
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   2.......10.........20.........30..... ....40.........50.......
 
   61........70.........80.........90.........100.........110.....
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Query Sequence  . . . . . NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPV
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Template Sequence  GVPARFSGSGSGTSYSLTISSVEAEDTATYYCQQYSGNPWTFG. GGTKLEIKRADAAPTV
Template Known Secondary structure  S

TTBTSS

GGG

SSSS

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B

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   58.60.........70.........80.........90.........100 .........110......
 
   116...120.........130.........140.........150.........160......
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Query Sequence  LTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAA. . . . . . . . .
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Template Sequence  SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM
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S
BSS
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   117..120.........130.........140.........150.........160.........170......
 
   167..170.........180.........190.........200.....
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Query Sequence  . . SLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  SSTLTLTKDEYERHNSYTCEATHKTSTSP. . . IVKSFNRNE
Template Known Secondary structure 
TT

TT
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   177..180.........190.........200..... ....210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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