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Job DescriptionA1YIY0
Confidence99.64%DateTue Jul 30 13:19:15 BST 2013
Rank404Aligned Residues163
% Identity11%Templatec1bfoD_
PDB info PDB header:antibodyChain: D: PDB Molecule:campath-1g antibody; PDBTitle: campath-1g igg2b rat monoclonal fab
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VQPGGSMRLSCAGSGFTFTDFY. . . MNWIRQPAGKAPEWLGFIRDKAKGYTTEYNPSVKG
Template Known Secondary structure 
TT

SS
GGGS
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   12.......20.........30... ......40.........50.........60........
 
   60.........70.........80.........90.........100..... ....110.....
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Query Sequence  . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDI. . QFWTPVSHPV
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Template Conservation 
            

 
  
   
 
 
 
                              
Template Sequence  RFTISRDNTQNMLYLQMNTLRAEDTATYYCAREGHTAAPFDYWGQGVMVTVSSAQTTAPS
Template Known Secondary structure  S
GGG

S

GGG


SSS
S
S


SSS

B

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   6970.........80.........90.........100.........110.........120........
 
   116...120.........130.........140.... .....150..... ....160.........170
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Query Sequence  LTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEIL. . . . GKPLAPSGRAASLLA
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Template Conservation                                   
                  
  
  
 
Template Sequence  VYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSS
Template Known Secondary structure 


TT



SBSS

GGGT

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TT
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   129130.........140.........150.........160.........170.........180........
 
   171........180.........190.....
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Query Sequence  SVKAEWSTKNYSCEAKNNISREISE
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Template Conservation 
     
   


 
 
  
  
  
Template Sequence  VTSSTWPSQTVTCNVAHPASSTKVD
Template Known Secondary structure  S
TTT

GGGT
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   189190.........200.........210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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