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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank226Aligned Residues173
% Identity14%Templatec3bszM_
PDB info PDB header:transport protein/immune systemChain: M: PDB Molecule:fab fragment heavy chain; PDBTitle: crystal structure of the transthyretin-retinol binding2 protein-fab complex
Resolution3.38 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPSSLAVS. . . LGQRATISCRASESVDSYGNSF. MHWYQQKPGQPPKLLIYRASNLESGI
Template Known Secondary structure  S
S...TTS


SS



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TTT
TT
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   7..10.... .....20.........30...... ...40.........50.........60..
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PARFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPY. . TFGGGTKLEIKRADAAPTVS
Template Known Secondary structure 
TT

TT

TT

GGG
S
SSSS
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B

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   63......70.........80.........90.........100 .........110.........120
 
   118.120.........130.........140.... .....150.........160.... .
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . . . A
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Template Sequence  IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
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TTS
S
BSS

TT
TTB




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   121........130.........140.........150.........160.........170.........180
 
   166...170.........180.........190.........200..
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  STLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFN
Template Known Secondary structure 
SGGGTT


TT
S...S
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   181........190.........200...... ...210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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