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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank224Aligned Residues172
% Identity14%Templatec1p7kL_
PDB info PDB header:immune systemChain: L: PDB Molecule:antibody light chain fab; PDBTitle: crystal structure of an anti-ssdna antigen-binding fragment (fab)2 bound to 4-(2-hydroxyethyl)piperazine-1-ethanesulfonic acid (hepes)
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPASLSAS. . . VGETVTITCRASENIYS. . . . . YLAWYQQKQGKSPQLLVYNAKTLAEGV
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   7..10.... .....20.........30. ........40.........50........
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PSRFSGSGSGTQFSLKINSLQPEDFGSYYCQHHYGTPLTFGAGTKLELKRADAAPTVSIF
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TT
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GGG

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B

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   5960.........70.........80.........90.........100.........110........
 
   118.120.........130.........140.... .....150.........160.... .
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . . . A
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Template Sequence  PPSSE. . QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
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..TTBSS

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   119120... ......130.........140.........150.........160.........170......
 
   166...170.........180.........190.........200.....
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  STLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFNRNE
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   177..180.........190.........200.. .......210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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