Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank304Aligned Residues163
% Identity12%Templatec2j6eH_
PDB info PDB header:immune systemChain: H: PDB Molecule:igm; PDBTitle: crystal structure of an autoimmune complex between a human2 igm rheumatoid factor and igg1 fc reveals a novel fc3 epitope and evidence for affinity maturation
Resolution3.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPSETLSLTCTVSGGSISRGSH. YWGWIRQPPGKGLEWIGSIYYSGNTYFNPSLKSRVT
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TTSSS
GGG
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   12.......20.........30.... .....40.........50.........60.........70
 
   62.......70.........80.........90.........100.........110.........120
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQH
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Template Sequence  ISVDTSKNQFSLKLSSVTAADTAVYYCARLGPDDYTLDGMDVWGQGTTVTVSSGSA. . SA
Template Known Secondary structure  TTTTS

STT

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   6970.........80.........90.........100.........110.........120.... ..
 
   121........130.........140.........150.........160...... ...
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Query Sequence  EATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAA. . . . . . . . . . . SLL
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Template Sequence  PTLFPLVSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLP
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   119120.........130.........140.........150.........160.........170........
 
   170.........180.........190.....
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Query Sequence  ASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  SKDVMQGTDEHVVCKVQHPNGNKEKN
Template Known Secondary structure  SS

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   187..190.........200.........210..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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