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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank150Aligned Residues174
% Identity15%Templatec2ghwD_
PDB info PDB header:virus/viral protein/antibioticChain: D: PDB Molecule:anti-sars scfv antibody, 80r; PDBTitle: crystal structure of sars spike protein receptor binding2 domain in complex with a neutralizing antibody, 80r
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GVVQPGKSLRLSCAASGFAFSSYA. . . MHWVRQAPGKGLEWVAVISYDGSNKYYADSVKG
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   10.........20.........30... ......40.........50.........60......
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  RFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSSE. . . TTLT
Template Known Secondary structure  TTTTT
S

GGG
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   67..70.........80.........90.........100.........110......... 120...
 
   118.120.........130.........140........ .150.........160
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPIFYSF. . . . . . . . . . . . . . . . . YINGEILGKPLA
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Template Sequence  QSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGS
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   138.140.........150.........160.........170.........180.........190.......
 
   161........170.........180.........190.........200.......
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Query Sequence  PSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSGTA
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Template Sequence  GSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVKSGLVP
Template Known Secondary structure  SSS
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GGG
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   198.200.........210.........220.........230.........240....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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