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Job DescriptionA1YIY0
Confidence99.87%DateTue Jul 30 13:19:15 BST 2013
Rank67Aligned Residues169
% Identity13%Templatec3nl4L_
PDB info PDB header:immune systemChain: L: PDB Molecule:antigen binding fragment, immunoglobulin igg - light chain; PDBTitle: crystal structure of amyloid prefibrillar oligomer-specific rabbit fab
Resolution1.54 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  TPASVSEP. . . VGGTVTIKCQASQSISS. . . . . YLAWYQQKPGQRPRLLIYETSTLASGV
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S...TT

SS

TT.....

TTS

TTT
TT
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   7..10.... .....20.........30. ........40.........50........
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PSRFKGSGSGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVL
Template Known Secondary structure 
TTTT
S

GGG


SSTTT






B

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   5960.........70.........80.........90.........100.........110........
 
   118.120.........130.........140.........150.........160..... .
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRA. . . . . . . . . . . A
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Template Sequence  IFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSS
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TTSBS

TT

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TTT

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   119120.........130.........140.........150.........160.........170........
 
   167..170.........180.........190.......
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Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISELK
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Template Sequence  TLTLTSTEYNSHKEYTCKVTQGTTSVVQSFN
Template Known Secondary structure  T

TT
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   179180.........190.........200.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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