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Job DescriptionA1YIY0
Confidence99.81%DateTue Jul 30 13:19:15 BST 2013
Rank196Aligned Residues176
% Identity13%Templatec2j6eB_
PDB info PDB header:immune systemChain: B: PDB Molecule:ig gamma-1 chain c region; PDBTitle: crystal structure of an autoimmune complex between a human2 igm rheumatoid factor and igg1 fc reveals a novel fc3 epitope and evidence for affinity maturation
Resolution3.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23...... 30.........40.........50.........60.........70.
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Query Sequence  PELTEFT. . . . . . NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . .
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Template Sequence  PSVFLFPPKPKDTLMISRTPEVTCVVVDVS. HEEPEVKFNWYVDGVEVHNAKTKPREEQY
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   238.240.........250.........260....... ..270.........280.........290......
 
   72.......80.........90.........100.........110.........120..
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Query Sequence  . . . . . . . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
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Template Sequence  NSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALP. . APIEKTISKAKGQPREPQVYTLPPS
Template Known Secondary structure  SS


TT



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S

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   297..300.........310.........320......... 330.........340.........350....
 
   123......130.........140.... .....150.........160...... ...170..
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Query Sequence  TNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRAA. . . . . . . . . SLLASV
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Template Sequence  RDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDK
Template Known Secondary structure  GGGGGSSBSS

SSSSB

S



TTS
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   355....360.........370.........380.........390.........400.........410....
 
   173......180.........190.........200.
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Query Sequence  KAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  SRWQQGNVFSCSVMHEALHNHYTQKSLSL
Template Known Secondary structure  TT


TTSGGG


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   415....420.........430.........440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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