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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank232Aligned Residues170
% Identity11%Templatec1x9qA_
PDB info PDB header:immune systemChain: A: PDB Molecule:4m5.3 anti-fluorescein single chain antibody PDBTitle: 4m5.3 anti-fluorescein single chain antibody fragment (scfv)
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60 ...
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . . . . . . NHV
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Template Sequence  SLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSG
Template Known Secondary structure 


TT

SS

B
TTS
B

TTS

TTT
TTS
TT
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   24.....30.........40.........50.........60.........70.........80...
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  SGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEKDGGVKLDETGGGL. . . . .
Template Known Secondary structure  TTSS

GGG

SSSS





GGG


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   84.....90.........100.........110.........120.........130........
 
   124.....130......... 140.........150.........
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Query Sequence  NLAVGDKVEFLCEAHQ. . . . . . . . . . . . GSLPIFYSFYINGEILGKPL. . . . . . . . . . . .
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Template Conservation  .   
                                                       
Template Sequence  . VQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRF
Template Known Secondary structure  .
TT

SS
GGG
TTT

GGGTT

TTTTTT
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   163......170.........180.........190.........200.........210.........220.
 
   160.........170.........180.........190.........200..
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Query Sequence  . . . . APSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Conservation              
 
  
   
 
 
 
 
        
  
     
Template Sequence  TISRDDSKSSVYLQMNNLRVEDTGIYYCTGASYGMEYLGQGTSVTVS
Template Known Secondary structure  GGGT
S

GGG
TT



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   222.......230.........240.........250.........260........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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