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Job DescriptionA1YIY0
Confidence99.72%DateTue Jul 30 13:19:15 BST 2013
Rank350Aligned Residues163
% Identity15%Templatec1mwaC_
PDB info PDB header:immune systemChain: C: PDB Molecule:2c t cell receptor alpha chain; PDBTitle: 2c/h-2kbm3/dev8 allogeneic complex
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.........50.........60.
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Query Sequence  QEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . .
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Template Sequence  QSVTQPD. . ARVTVSEGASLQLRCKYSYSATP. . . . . YLFWYVQYPRQGLQLLLKYYSGD
Template Known Secondary structure 


S
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SS

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   1...... ..10.........20.........30 .........40.........50...
 
   62.......70.........80.........90.........100.........110
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Query Sequence  . . . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTP
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Template Conservation                       
 
      
 
 
 
                
 
    
Template Sequence  PVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVYFCAVSGFASALTFGSGTKVIVLPYI
Template Known Secondary structure  SB


TTTB
BTTTTB

SS

GGG

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   54.....60.........70.........80.........90.........100.........110...
 
   111........120.........130.........140.........150.........160... .....
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Query Sequence  VSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . RAASL
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Template Sequence  QNPEPAVYAL. . . . KDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDATVLDMKAMDSK
Template Known Secondary structure  S








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SS
S



B


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   119120........ .130.........140.........150.........160.........170....
 
   169170.........180.........190
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Query Sequence  LASVKAEWSTKNYSCEAKNNIS
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Template Sequence  SNGAIAWSNQTSFTCQDIFKET
Template Known Secondary structure 

B

SSS


SSSSTTSS
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   177..180.........190........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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