Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank174Aligned Residues168
% Identity13%Templatec3bp6B_
PDB info PDB header:signaling proteinChain: B: PDB Molecule:programmed cell death 1 ligand 2; PDBTitle: crystal structure of the mouse pd-1 mutant and pd-l2 complex
Resolution1.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.... .....60.........70..
Predicted Secondary structure 













........





Query SS confidence 

































. . . . . . . .

















Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLF. . . . . . . . YTFYKNNHVIQDRSPHSV
Query Conservation 
 
 
      

  


 
     
        ........                 
Alig confidence 







...






















........

















Template Conservation 
       ... 
  
 
 
         
 
                           
Template Sequence  PKEVYTVD. . . VGSSVSLECDFDRRELEGIRASLQKVETSLQSERATLLEEQLPLGKALF
Template Known Secondary structure  S
S...TTS

TT

TT




B
SS

GGGGGGT
Template Predicted Secondary structure 


...


















Template SS confidence 



























































   26...30... ......40.........50.........60.........70.........80..
 
   73......80.........90.........100.........110.........120.........130..
Predicted Secondary structure 


























Query SS confidence 



























































Query Sequence  FSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVE
Query Conservation   
  
   
 
 
 
 
 
                                 
  
    
Alig confidence 









































.......










Template Conservation   
      
 
 
 
                           .......           
Template Sequence  HIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTR. . . . . . . ILEVPGTGEVQ
Template Known Secondary structure 
S

GGG
TTB



.......
TTT

Template Predicted Secondary structure 


















.......




Template SS confidence 



























































   88.90.........100.........110.........120......... 130.........140
 
   133......140.........150.........160..... ....170.........180.........190
Predicted Secondary structure 














..





Query SS confidence 
































. .
























Query Sequence  FLCEAHQGSLPIFYSFYINGEILGKPLAPSGRA. . ASLLASVKAEWSTKNYSCEAKNNIS
Query Conservation 
 
            
 
 
             ..  
 
  
   
 
 
 
 
 
  
Alig confidence 









.





















..
























Template Conservation            .    
                     
 
  
   
 
 


 
 
   
Template Sequence  LTCQARGYPL. AEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHM
Template Known Secondary structure  BS
.
TT

S


TTS



TT

TTT
Template Predicted Secondary structure 




.


















Template SS confidence 



























































   141........150 .........160.........170.........180.........190.........
 
   191........
Predicted Secondary structure 

Query SS confidence 








Query Sequence  REISELKKF
Query Conservation     
    
Alig confidence 








Template Conservation      

   
Template Sequence  KELTSAIID
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 








   200........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D