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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank260Aligned Residues159
% Identity12%Templatec1dqqB_
PDB info PDB header:immune systemChain: B: PDB Molecule:anti-lysozyme antibody hyhel-63 (heavy chain); PDBTitle: crystal structure of anti-lysozyme antibody hyhel-63
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPSQTLSLTCSVTGDSVTSDY. . . WSWIRKFPGNKLEYMGYISYSGSTYYHPSLKSRIS
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TTS
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GGGS
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TTS

GGGTTT
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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100.........110.........120
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQH
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Template Sequence  ITRDTSKNQYYLQLNSVTTEDTATYYCASWGGDVWGAGTTVTVSSAKTTA. . . PSVYPLA
Template Known Secondary structure  TTTT
S

GGG
TTSSSB







B
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   6970.........80.........90.........100.........110........ .120.....
 
   121........130.........140.... .....150.........160..... ....170..
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Query Sequence  EATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRA. . . . . . . ASLLASV
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Template Sequence  PVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV. T
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GGG

SSBSS

GGGTB
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   126...130.........140.........150.........160.........170.........180... .
 
   173......180.........190.....
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Query Sequence  KAEWSTKNYSCEAKNNISREISE
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Template Sequence  SSTWPSQSITCNVAHPASSTKVD
Template Known Secondary structure  GGGTTTS

GGGT
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   193......200.........210.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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