Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank126Aligned Residues174
% Identity13%Templatec2gsiG_
PDB info PDB header:immune systemChain: G: PDB Molecule:immunoglobulin (kappa) light chain; PDBTitle: crystal structure of a murine fab in complex with an 11 residue2 peptide derived from staphylococcal nuclease
Resolution2.81 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.....
Predicted Secondary structure 














...............
Query SS confidence 












































. . . . . . . . . . . . . . .
Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . . . . . . . . . .
Query Conservation 
 
 
      

  


 
     
                   ...............
Alig confidence 







...




















.











...............
Template Conservation   
  
 
 ... 
  
 
 
            . 
 
                       
Template Sequence  SPASLAVS. . . LGQPATISCGASKSVRTSGYS. YMDWNQQKPGQPPRRLIYLVSNLESGV
Template Known Secondary structure 
S...TTS
SS



SS

.

TTS

TTT
TT
Template Predicted Secondary structure 


...











.













Template SS confidence 



























































   7..10.... .....20.........30..... ....40.........50.........60..
 
   66...70.........80.........90.........100.........110.......
Predicted Secondary structure  ........
























Query SS confidence  . . . . . . . .



















































Query Sequence  . . . . . . . . DRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
Query Conservation  ........      
 
  
   
 
 
 
 
 
                          
Alig confidence  ........
































.

















Template Conservation                
 
      
 
 
 
           .                  
Template Sequence  PARFSGSGSGTDFTLNIHPVEEEDAATYYCSHIRELPRSSG. GGTKLEIKRADAAPTVSI
Template Known Secondary structure 
TT
TTSS

GGG

SSSS
B.


S
B

Template Predicted Secondary structure 












.





Template SS confidence 



























































   5960.........70.........80.........90......... 100.........110.......
 
   118.120.........130.........140.........150.........160......
Predicted Secondary structure 





















...........
Query SS confidence 
















































. . . . . . . . . . .
Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAA. . . . . . . . . . .
Query Conservation         
  
    
 
            
 
 
              ...........
Alig confidence 
















































...........
Template Conservation                                
                            
Template Sequence  FPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS
Template Known Secondary structure 


TTGGGTTBSS

TT

TT



TTT

Template Predicted Secondary structure 






















Template SS confidence 



























































   118.120.........130.........140.........150.........160.........170.......
 
   167..170.........180.........190.........200..
Predicted Secondary structure 







Query SS confidence 



































Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
Query Conservation   
 
  
   
 
 
 
 
 
  
   
    
 
 
Alig confidence 
























...







Template Conservation   
 
      
 
 


 
 
    ...     
  
Template Sequence  TLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFN
Template Known Secondary structure  TT


TTSS...S
Template Predicted Secondary structure 






...
Template SS confidence 



































   178.180.........190.........200.. .......210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D