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Job DescriptionA1YIY0
Confidence99.63%DateTue Jul 30 13:19:15 BST 2013
Rank407Aligned Residues165
% Identity10%Templatec1mf2H_
PDB info PDB header:immunoglobulinChain: H: PDB Molecule:monoclonal antibody f11.2.32; PDBTitle: anti hiv1 protease fab complex
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.....
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VQPGGSRKLSCAASGFTFMRFGMHWVRQAPEKGLEWVAYISSGSSTIYYADTVKGRFTIS
Template Known Secondary structure 
TT

SS
GGGSTTT
TTSS

TTTTTT
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   12.......20.........30.........40.........50.........60.........70.
 
   66...70.........80.........90.........100. ........110.........
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Query Sequence  . . . DRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSG. . . YLDIQFWTPVSHPVLTLQ
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Template Conservation           
 
  
   
 
 
 
 
                                 
Template Sequence  RDNPKNTLFLQMTSLRSEDTALYYCARSGGIERYDGTYYVMDYWGQGTSVTVSSAKTTPP
Template Known Secondary structure  GGGT
S

GGG


TTS








B

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   71........80.........90.........100.........110.........120.........130
 
   120.........130.........140.........150.........160.... .....170.
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . AASLLAS
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Template Sequence  SVYPLAPGNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV.
Template Known Secondary structure 




BSS

GGGTB
TT


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   120.........130.........140.........150.........160.........170........
 
   172.......180.........190.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISE
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Template Conservation       
 
 


 
 
        
Template Sequence  PSSPRPSETVTCNVAHPASSTKVD
Template Known Secondary structure  TTS

GGGT
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   179180.........190.........200..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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