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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank207Aligned Residues156
% Identity19%Templatec2gkiA_
PDB info PDB header:immune systemChain: A: PDB Molecule:nuclease; PDBTitle: heavy and light chain variable single domains of an anti-dna binding2 antibody hydrolyze both double- and single-stranded dnas without3 sequence specificity
Resolution2.88 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ELVKPGASVKMSCKASGYTFTSYV. . . MHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKG
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TT

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GGGS
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   32.......40.........50..... ....60.........70.........80........
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  KATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAM. DYWGQGTSVTVSSDLVMS
Template Known Secondary structure  TB
GGGT
S

GGG

GGGTT
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   8990.........100.........110.........120......... 130.........140.......
 
   118.120.........130......... 140.........150.......
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQ. . . . . . . . . . . . . . . . . . . GSLPIFYSFYINGEILGK.
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Template Sequence  QSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVP
Template Known Secondary structure 
S
STTS
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TTTT

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TT

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   164.....170.........180.........190.........200.........210.........220...
 
   158.160.........170.........180.......
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Query Sequence  . . . PLAPSGRAASLLASVKAEWSTKNYSCEAKN
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Template Sequence  DRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSY
Template Known Secondary structure  TTTTSS

GGG
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   224.....230.........240.........250......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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