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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank290Aligned Residues160
% Identity14%Templatec1sbbC_
PDB info PDB header:immune systemChain: C: PDB Molecule:protein (14.3.d t cell antigen receptor); PDBTitle: t-cell receptor beta chain complexed with superantigen seb
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NKVAVTGGKVTLSCQQTNNHN. . . . . . NMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDG
Template Known Secondary structure  TT

SS

S......
SSS
SSTT


S

TT
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   10.........20.........30 .........40.........50.........60...
 
   62.......70.........80.........90...... ...100.........110...
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Query Sequence  . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLI. . . . . . QKKSGYLDIQFWTPVSH
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Template Sequence  YKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPP
Template Known Secondary structure 


SSSB
SS

GGG
S
TT
TTT



S
GGG
B

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   65....70.........80.........90.........100.........110.........120....
 
   114.....120.........130.........140.... .....150.........160....
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Query Sequence  PVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . .
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Template Sequence  KVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYS
Template Known Secondary structure 


GGG
SS



SBS

TT
TT
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TT
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   126...130.........140.........150.........160.........170.........180.....
 
   165....170......... 180.........190..
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Query Sequence  . . . AASLLASVKAEWSTK. NYSCEAKNNISRE
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Template Sequence  YCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE
Template Known Secondary structure 



TT




T
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   190.........200.........210.........220.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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