Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank151Aligned Residues174
% Identity14%Templatec2ifgB_
PDB info PDB header:transferaseChain: B: PDB Molecule:high affinity nerve growth factor receptor; PDBTitle: structure of the extracellular segment of human trka in complex with2 nerve growth factor
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30. ........40.........50.........60....... ..70....
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Query Sequence  PNPELTEFTNS. . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDR. . SPHSVFS
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Template Sequence  GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL
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   192.......200.........210.........220.........230.........240.........250.
 
   75....80.........90.........100.........110.........120.........130....
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Query Sequence  AEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFL
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Template Sequence  ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHT. . . . . . . . . AVEMHHWCIP
Template Known Secondary structure  S

GGGSS



B
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   252.......260.........270.........280.........290.. .......300..
 
   135....140.........150.........160... ......170.........180...
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Query Sequence  CEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . . . . RAASLLASVKAEWSTKNYSC
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Template Sequence  FSVDGQPA. PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL
Template Known Secondary structure  S
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TT



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TT


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GGG
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   303......310 .........320.........330.........340.........350.........360.
 
   184.....190.........200.......
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Query Sequence  EAKNNISREISELKKFPLVVSGTA
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Template Sequence  LAANPFGQAS. . . ASIMAAFMDNP
Template Known Secondary structure  TT...

S


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   362.......370. ........380..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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