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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank287Aligned Residues164
% Identity12%Templatec2r29L_
PDB info PDB header:viral protein/immune systemChain: L: PDB Molecule:light chain of fab 1a1d-2; PDBTitle: neutralization of dengue virus by a serotype cross-reactive2 antibody elucidated by cryoelectron microscopy and x-ray3 crystallography
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60. ...
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HVI
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Template Sequence  LAVSLGQRATISCRASESVVRYGN. SFMHWYQQKPGQPPKLLIYRASSLESGIPTRFSGS
Template Known Secondary structure 

SSS

B

SS

B
SSS.B

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B
BSSTT
B
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   11........20.........30.... .....40.........50.........60.........
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  QDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATN
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Template Sequence  GSRTDFTLTINPVEADDVATYYCQQTNVDPWAFGGGTKLEIKRADAAPTVSIFPPS. . . .
Template Known Secondary structure 
SS
SS

TT

S
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B





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   70.........80.........90.........100.........110.........120.....
 
   125....130.........140.... .....150.........160.... .....170........
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Query Sequence  LAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . AASLLASVKAEWST
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Template Sequence  SLTSGGASVVCFLNNFYPKDINVKWKIDRQNGVLNSWTDQDSTYSMSSTLTLTKDEYERH
Template Known Secondary structure 


SSB






BSSS



B





TT

S


B


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   126...130.........140.........150.........160.........170.........180.....
 
   179180.........190......
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Query Sequence  KNYSCEAKNNISREISEL
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Template Sequence  NSYTCEATSPIVKSFNRN
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S
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   194.....200.........210.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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