Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank139Aligned Residues173
% Identity13%Templatec2aabL_
PDB info PDB header:immune systemChain: L: PDB Molecule:anti-idiotypic monoclonal antibody (light chain); PDBTitle: structural basis of antigen mimicry in a clinically2 relevant melanoma antigen system
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
Predicted Secondary structure 













...................
Query SS confidence 








































. . . . . . . . . . . . . . . . . . .
Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
Query Conservation 
 
 
      

  


 
     
               ...................
Alig confidence 







...




















.







...................
Template Conservation   
  
 
 ... 
  
 
 
            . 
 
 
                     
Template Sequence  SPASLAVS. . . LGQRVTISCRASESVEYYGSS. LMQWYQQKPGQPPKLLIYAASNVESGV
Template Known Secondary structure 
S
...TTS
SS

B
SS
B.

TTS

TTT
TTS
Template Predicted Secondary structure 


...











.











Template SS confidence 



























































   7..10.... .....20.........30..... ....40.........50.........60..
 
   62.......70.........80.........90.........100.........110.......
Predicted Secondary structure  ....

























Query SS confidence  . . . .























































Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
Query Conservation  ....          
 
  
   
 
 
 
 
 
                          
Alig confidence  ....























































Template Conservation                
 
      
 
 
 
                              
Template Sequence  PARFSGSGSGTDFSLNIHPVEEDDIAMYFCQQSRKIPYTFGGGTKLEIKRADAAPTVSIF
Template Known Secondary structure 
TTTTSS

GGG
S
SSSS

B






B

Template Predicted Secondary structure 


























Template SS confidence 



























































   5960.........70.........80.........90.........100.........110........
 
   118.120.........130.........140.... .....150.........160... ..
Predicted Secondary structure 













.






...........
Query SS confidence 


























.


















. . . . . . . . . . .

Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . . . . . . RA
Query Conservation         
  
    
 
         .   
 
 
           ...........  
Alig confidence 




..



















.


















...........

Template Conservation       ..                        
                            
Template Sequence  PPSSE. . QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
Template Known Secondary structure 


..TTTBSS
TT
SS



TTT

Template Predicted Secondary structure 

..

























Template SS confidence 



























































   119120... ......130.........140.........150.........160.........170......
 
   166...170.........180.........190.........200..
Predicted Secondary structure 







Query SS confidence 




































Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
Query Conservation    
 
  
   
 
 
 
 
 
  
   
    
 
 
Alig confidence 

























...







Template Conservation 
 
 
      
 
 


 
      ...     

 
Template Sequence  STLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFN
Template Known Secondary structure  TT

TT...
Template Predicted Secondary structure 






...
Template SS confidence 




































   177..180.........190.........200.. .......210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D