Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.86%DateTue Jul 30 13:19:15 BST 2013
Rank77Aligned Residues177
% Identity13%Templatec2x1xR_
PDB info PDB header:hormone/signaling proteinChain: R: PDB Molecule:vascular endothelial growth factor receptor 2; PDBTitle: crystal structure of vegf-c in complex with domains 2 and 32 of vegfr2 in a tetragonal crystal form
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.... .....60.........70.......
Predicted Secondary structure 













...








Query SS confidence 

































. . .






















Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLF. . . YTFYKNNHVIQDRSPHSVFSAEA
Query Conservation 
 
 
      

  


 
     
        ...                 
 
  
Alig confidence 

































...






















Template Conservation         
 
  
  
 
 
    
   
 
                       
 
  
Template Sequence  DQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSY
Template Known Secondary structure 
S
S
SS



BS
SS

TTT


SSSSTTTGG
Template Predicted Secondary structure 



























Template SS confidence 



























































   131........140.........150.........160.........170.........180.........190
 
   78.80.........90.........100.........110.........120.........130.......
Predicted Secondary structure 























Query SS confidence 



























































Query Sequence  KEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEA
Query Conservation     
 
 
 
 
 
                                 
  
    
 
  
Alig confidence 






























....
























Template Conservation     
 
 
 
                     ....               
    
 
  
Template Sequence  MISYAGMVFCEAKINSYQSIMYIVVVVGYRI. . . . YDVVLSPSHGIELSVGEKLVLNCTA
Template Known Secondary structure  GTTT
S









....S
S
TT

Template Predicted Secondary structure 










....







Template SS confidence 



























































   191........200.........210.........220. ........230.........240......
 
   138.140. ........150.........160... ......170.........180....
Predicted Secondary structure 



.









............



Query SS confidence 



.





















. . . . . . . . . . . .




















Query Sequence  HQGS. LPIFYSFYINGEILGKPLAPSG. . . . . . . . . . . . RAASLLASVKAEWSTKNYSCE
Query Conservation      .      
 
 
           ............    
 
  
   
 
 
 
 
Alig confidence 



.





















............




















Template Conservation                                             
 
  
   
 
 
 
 
Template Sequence  RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCA
Template Known Secondary structure 
SS



S

S
SS


S

S
SS

GGG
Template Predicted Secondary structure 



























Template SS confidence 



























































   249250.........260.........270.........280.........290.........300........
 
   185....190.........200..
Predicted Secondary structure 




Query SS confidence 

















Query Sequence  AKNNISREISELKKFPLV
Query Conservation 
 
  
   
    
 
 
Alig confidence 








.







Template Conservation 
 
  
   . 
  
 
 
Template Sequence  ASSGLMTKK. NSTFVRVH
Template Known Secondary structure  TT.
Template Predicted Secondary structure 


.
Template SS confidence 

















   309310....... ..320.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D