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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank284Aligned Residues169
% Identity12%Templatec1igtC_
PDB info PDB header:immunoglobulinChain: C: PDB Molecule:igg2a intact antibody - mab231; PDBTitle: structure of immunoglobulin
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.. .
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . . . . . . . . . . . . . V
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Template Sequence  SLSASLGDTITITCHASQNINV. . . . . WLSWYQQKPGNIPKLLIYKASNLHTGVPSRFSG
Template Known Secondary structure 
TT

SS

TT.....

TTS


GGG
TT

TT
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   10.........20.........30. ........40.........50.........60....
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  SGSGTGFTLTISSLQPEDIATYYCQQGQSYPL. . TFGGGTKLEIKRADAAPTVSIFPPSS
Template Known Secondary structure 

SS
SS

GGG
S
SSSS
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B

B




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   65....70.........80.........90...... ...100.........110.........120..
 
   124.....130.........140.... .....150.........160.... .....170.
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Query Sequence  NLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . . . AASLLAS
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Template Conservation                                                        
 
 
 
Template Sequence  EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT
Template Known Secondary structure  TBSS


STT
B
S




TTT

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   123......130.........140.........150.........160.........170.........180..
 
   172.......180.........190.........200.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  KDEYERHNSYTCEATHKTSTSP. . . IVKSFNRNE
Template Known Secondary structure  T

TT...TTT
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   183......190.........200.... .....210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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