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Job DescriptionA1YIY0
Confidence99.72%DateTue Jul 30 13:19:15 BST 2013
Rank351Aligned Residues162
% Identity11%Templatec1clyH_
PDB info PDB header:immunoglobulinChain: H: PDB Molecule:igg fab (human igg1, kappa); PDBTitle: igg fab (human igg1, kappa) chimeric fragment (cbr96) complexed with2 lewis y nonoate methyl ester
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VQPGGSLKVSCVTSGFTFSDYY. . . MYWVRQTPEKRLEWVAYISQGGDITDYPDTVKGRF
Template Known Secondary structure 
TT
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GGGS
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   12.......20.........30... ......40.........50.........60........
 
   60.........70.........80.........90.........100....... ..110.......
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Query Sequence  NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQF. . WTPVSHPVLT
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Template Conservation              
 
  
   
 
 
 
 
                              
Template Sequence  TISRDNAKNSLYLQMSRLKSEDTAMYYCARGLDDGAWFAYWGQGTLVTVSVASTKGPSVF
Template Known Secondary structure  GGGTS

GGG
TTT



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B

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   68.70.........80.........90.........100.........110.........120.......
 
   118.120.........130.........140.........150.........160..... ...
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRA. . . . . . . . . ASL
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Template Sequence  PLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVV
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SSTT

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BSS

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   123......130.........140.........150.........160.........170.........180..
 
   169170.........180.........190.....
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Query Sequence  LASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  TV. PSSSLGTQTYICNVNHKPSNTKVD
Template Known Secondary structure  .
GGGBTTB
GGGT
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   192. ......200.........210.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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