Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.59%DateTue Jul 30 13:19:15 BST 2013
Rank420Aligned Residues164
% Identity10%Templatec1cdhA_
PDB info PDB header:t-cell surface glycoproteinChain: A: PDB Molecule:t cell surface glycoprotein cd4; PDBTitle: structures of an hiv and mhc binding fragment from human2 cd4 as refined in two crystal lattices
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60.........70. ...
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Query Sequence  TEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . . . . . . . . VFS
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Template Sequence  KVVLGKKGDTVELTCTASQKKSIQFH. . . . . WKNSNQIKILGNQGSFLTKGPSKLNDRAD
Template Known Secondary structure  TT



B

SSSS
S.....TT


STTS
B

S
TTTTT
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   2.......10.........20....... ..30.........40.........50......
 
   75....80.........90.........100.........110.........120.........130....
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Query Sequence  AEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFL
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Template Conservation                                                              
Template Sequence  SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTL
Template Known Secondary structure 

TTSGGGTB


S

GGG
TTSS
STT

B
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   57..60.........70.........80.........90.........100.........110......
 
   135....140.........150.........160.........170.........180.........190....
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Query Sequence  CEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREIS
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Template Sequence  TLESPPGSSPSVQCRSPRGKNIQG. . . . . . GKTLSVSQLELQDSGTWTCTVLQNQKKVEF
Template Known Secondary structure 

TT



TTS
......SSB

BSS

STT
S

SS
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   117..120.........130.........140 .........150.........160.........170
 
   195....200.
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Query Sequence  ELKKFPL
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Template Conservation   .  
 
Template Sequence  K. IDIVV
Template Known Secondary structure  .

Template Predicted Secondary structure  .
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   171 .....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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