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Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank152Aligned Residues181
% Identity13%Templatec3sgkB_
PDB info PDB header:immune systemChain: B: PDB Molecule:fc fragment; PDBTitle: unique carbohydrate/carbohydrate interactions are required for high2 affinity binding of fcgiii and antibodies lacking core fucose
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30. ........40.........50.........60.........70.
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Query Sequence  EQFPNPELTEFTNS. . . . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS
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Template Sequence  ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHED. PEVKFNWYVDGVEVHNAKTKP
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   233......240.........250.........260.........270 .........280.........290.
 
   72.......80.........90.........100.........110.......
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Query Sequence  . . . . . . . . . . . . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPR. . EPQVY
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TTS


TT


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   292.......300.........310.........320.........330.........340.... .....
 
   118.120.........130......... 140.........150.........160... ....
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSG. . . . . . . . . RAAS
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Template Sequence  TLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSK
Template Known Secondary structure 


TTGGGSSBSS

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   350.........360.........370.........380.........390.........400.........
 
   168.170.........180.........190.........200.
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Query Sequence  LLASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  LTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSL
Template Known Secondary structure  TTT


TTSGGG


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   410.........420.........430.........440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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