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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank147Aligned Residues173
% Identity13%Templatec1ai1L_
PDB info PDB header:complex (antibody/peptide)Chain: L: PDB Molecule:igg1-kappa 59.1 fab (light chain); PDBTitle: hiv-1 v3 loop mimic
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPASLVVS. . . LGQRATISCRASESVDSYGKSF. MHWYQQKPGQPPKVLIYIASNLESGV
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   7..10.... .....20.........30...... ...40.........50.........60..
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PARFSGSGSRTDFTLTIDPVEADDAATYYCQQNNEDPPTFGAGTKLEMRRADAAPTVSIF
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   5960.........70.........80.........90.........100.........110........
 
   118.120.........130.........140.... .....150.........160......
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRAA. . . . . . . . . .
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Template Sequence  PPSSE. . QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
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   119120... ......130.........140.........150.........160.........170......
 
   167..170.........180.........190.........200..
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Query Sequence  . SLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  STLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFN
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   177..180.........190.........200.. .......210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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