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Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank312Aligned Residues173
% Identity16%Templatec1yedH_
PDB info PDB header:catalytic antibodyChain: H: PDB Molecule:igg1 fab fragment (d.2.4); PDBTitle: structure of a catalytic antibody igg2a fab fragment (d2.4)
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   13......20.........30.........40.........50.........60.
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Query Sequence  MAEAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . .
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Template Sequence  AVKLQQ. . SGPEL. . . . VRPGTSVKLSCKTSGYIFTSYW. . . IHWLKQSSGQGLEWIARI
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   1..... ...10. ........20.........30... ......40.........50.
 
   62.......70.........80.........90.........100
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Query Sequence  . . . . . . . . . . . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKS. .
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Template Sequence  YPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSEDSAVYFCTRWGFTTVRENYYAM
Template Known Secondary structure  TTTT
GGGBTTTTTTS

GGG


B

TTT

B

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   52.......60.........70.........80.........90.........100.........110.
 
   101........110.........120.........130.........140.........150.....
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Query Sequence  . . . . . GYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEIL
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Template Conservation                                                 .      
     
Template Sequence  DYWGQGTLVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFP. EPVTVTWNSGSL
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S

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SS
SSSSBS.S

GGGTB
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   101........110.........120.........130.........140....... ..150.........
 
   156...160..... ....170.........180.........190.....
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Query Sequence  GKPLAPSGRA. . . . . . . . ASLLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  SSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVD
Template Known Secondary structure 
TT




SSSSTTSSSS

GGGT
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   162.......170.........180.........190.........200.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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