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Job DescriptionA1YIY0
Confidence99.75%DateTue Jul 30 13:19:15 BST 2013
Rank315Aligned Residues169
% Identity16%Templatec3juyF_
PDB info PDB header:immune systemChain: F: PDB Molecule:3b3 single chain variant hiv-1 antibody; PDBTitle: crystal structure of a 3b3 variant, a broadly neutralizing2 hiv-1 scfv antibody
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EVKKPGASVKVSCQASGYRFSHFT. . . VHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQD
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   10.........20.........30... ......40.........50.........60......
 
   61........70.........80.........90.........100..... ....110.
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Query Sequence  . . . NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDI. . . . . . QFWTPV
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Template Conservation                
 
  
   
 
 
 
 
                            
Template Sequence  RVTFTADTSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVS
Template Known Secondary structure  GGGGT
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GGG





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   67..70.........80.........90.........100.........110.........120......
 
   112.......120.........130.........140.........150 ...
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Query Sequence  SHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYI. . . . . . . . . . . . . . . . . . NGE
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Template Sequence  SEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGI
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S

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   127..130.........140.........150.........160.........170.........180......
 
   154.....160.........170.........180.........190.........
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Query Sequence  ILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKF
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Template Sequence  SDRFSGSGSGTDFTLTITRVEPEDFALYYCQVYGASSYTFGQGTKL
Template Known Secondary structure 
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GGG
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   202.......210.........220.........230.........240.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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