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Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank301Aligned Residues169
% Identity15%Templatec1hh6A_
PDB info PDB header:immune systemChain: A: PDB Molecule:igg2a kappa antibody cb41 (light chain); PDBTitle: anti-p24 (hiv-1) fab fragment cb41 complexed with a peptide
Resolution2.6 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60. ..
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HV
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Template Sequence  SMYTSLGERVTITCKASQDINS. . . . . FLTWFLQKPGKSPKTLIYRANRLMIGVPSRFSG
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TT

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TTS

TTT
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TT
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   10.........20.........30. ........40.........50.........60....
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  SGSGQTYSLTISSLEYEDMGIYYCLQYDDFPLTFGAGTKLDLKRADAAPTVSIFPPSSE.
Template Known Secondary structure  SSSSS

GGG

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   65....70.........80.........90.........100.........110.........120...
 
   124.....130.........140.... .....150.........160...... ...170.
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Query Sequence  NLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRAA. . . . . . . . . . . SLLAS
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Template Sequence  . QLTSGGASVVCFLNNFYPKEINVKWKIDGSERQNGVLDSWTEQDSKDSTYSMSSTLTLT
Template Known Secondary structure  .TBSS
TT
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TTT

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   124.....130.........140.........150.........160.........170.........180..
 
   172.......180.........190.........200.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  KDEYERHNSYTCEATHKTSTSP. . . IVKSFNRNE
Template Known Secondary structure  TT

TT...TTT
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   183......190.........200.... .....210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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