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Job DescriptionA1YIY0
Confidence99.84%DateTue Jul 30 13:19:15 BST 2013
Rank110Aligned Residues156
% Identity15%Templatec2e9wB_
PDB info PDB header:transferase/hormoneChain: B: PDB Molecule:mast/stem cell growth factor receptor; PDBTitle: crystal structure of the extracellular domain of kit in complex with2 stem cell factor (scf)
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.... .....60.........70......
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLF. . . . . . . . . . YTFYKNNHVIQDRSPHSVFSAE
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Template Sequence  TVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTR
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S


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S
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   322.......330.........340.........350.........360.........370.........380.
 
   77..80.........90.........100.........110.........120.........130......
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Query Sequence  AKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCE
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Template Sequence  LKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI. . . . . . . . . . . . LTYDRLVNGMLQCV
Template Known Secondary structure 

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B

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   382.......390.........400.........410..... ....420.........
 
   137..140.........150.........160. ........170.........180....
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Query Sequence  AHQGSLPIFYSFYINGEILGKPLAP. . . . . . . . . . . . SGRAASLLASVKAEWSTKNYSCE
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Template Sequence  AAGFPE. PTIDWYFCPGCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECK
Template Known Secondary structure  S
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   430..... ....440.........450.........460.........470.........480........
 
   185....190.....
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Query Sequence  AKNNISREISE
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Template Sequence  AYNDVGKTSAY
Template Known Secondary structure 
SS
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   493......500...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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