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Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank334Aligned Residues165
% Identity13%Templatec1cz8H_
PDB info PDB header:immune systemChain: H: PDB Molecule:heavy chain of neutralizing antibody; PDBTitle: vascular endothelial growth factor in complex with an2 affinity matured antibody
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   28.30.........40.........50.........
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GLVQPGGSLRLSCAASGYDFTHYG. . . MNWVRQAPGKGLEWVGWINTYTGEPTYAADFKR
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TT

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GGGS
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TTS


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   10.........20.........30... ......40.........50.........60......
 
   60.........70.........80.........90.........100.........110.......
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Query Sequence  . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  RFTFSLDTSKSTAYLQMNSLRAEDTAVYYCAKYPYYYGTSHWYFDVWGQGTLVTVSSAST
Template Known Secondary structure  TGGGT
S

GGG




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B


SS

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   67..70.........80.........90.........100.........110.........120......
 
   118.120.........130.........140.... .....150.........160..... ....
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRA. . . . . . . ASLL
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Template Sequence  KGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVV
Template Known Secondary structure  B





BSS

GGGTB
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   127..130.........140.........150.........160.........170.........180......
 
   170.........180.........190.....
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Query Sequence  ASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  TVPSSSLGTQTYICNVNHKPSNTKVD
Template Known Secondary structure  GGGTTT


GGGT
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   193......200.........210........
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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