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Job DescriptionA1YIY0
Confidence99.69%DateTue Jul 30 13:19:15 BST 2013
Rank385Aligned Residues170
% Identity11%Templatec2j4wH_
PDB info PDB header:immune systemChain: H: PDB Molecule:fab fragment of monoclonal antibody f8.12.19; PDBTitle: structure of a plasmodium vivax apical membrane antigen 1-2 fab f8.12.19 complex
Resolution2.5 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGGSLKLSCAASGFIFSDYY. . . MYWVRQTPEKRLEWVATISDGNSYTYYVDSVKGRF
Template Known Secondary structure 
TT

SS
GGGS
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GGGTTT
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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90......... 100.........110...
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Query Sequence  . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. . . . . . SGYLDIQFWTPVSH
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Template Sequence  TISRDNAKNNLYLQMSSLKSEDTAIYYCARDGPTDSSGYGGFGYWGQGTLVTVSEAKTTP
Template Known Secondary structure  TTTT
S

GGG



SSS
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SS

B
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   68.70.........80.........90.........100.........110.........120.......
 
   114.....120.........130.........140.........150.........160... ...
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Query Sequence  PVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . RAA
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Template Sequence  PSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLS
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SSBSS

GGGTB
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   119120.........130.........140.........150.........160.........170........
 
   167..170.........180.........190.........200.....
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Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  SSVTVPSSPRPSETVTCNVAHPASS. . . TKVDKKIVPRD
Template Known Secondary structure  TTS

GGGT...




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   189190.........200.........210... ......220....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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