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Job DescriptionA1YIY0
Confidence99.60%DateTue Jul 30 13:19:15 BST 2013
Rank417Aligned Residues158
% Identity17%Templatec3etbG_
PDB info PDB header:immune system/toxinChain: G: PDB Molecule:antibody m18 light chain and antibody m18 heavy PDBTitle: crystal structure of the engineered neutralizing antibody2 m18 complexed with anthrax protective antigen domain 4
Resolution3.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  TTSSLS. . . ASLGDRVTVSCRASQDIRNYLN. . . . . WYQQKPDGTVKFLIYYTSRLQPGV
Template Known Secondary structure  S


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TT




SS

TT
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SSS

TTT
TTS
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   7..10.. .......20.........30.... .....40.........50........
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PSRFSGSGSGTDYSLTINNLEQEDIGTYFCQQGNTPPWTFGGGTKLEIKREVQLQQSGPE
Template Known Secondary structure 
TT




SSS

SS

GGG

SSSS
B










SB



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   5960.........70.........80.........90.........100.........110........
 
   118.120.. .......130.........140.........150......
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Query Sequence  LQHEA. . . . . . . . . . . . . . . . . . . . . TNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILG
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Template Conservation                                                           .  
Template Sequence  LVKPGASVKISCKDSGYAFNSSWMNWVKQRPGQGLEWIGRIYPGDGDSNYNGKFEGK. AI
Template Known Secondary structure 
TT



B

SS
STTS



TTS


TTT


STTTTT.

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   1011........1020.........1030.........1040.........1050.........1060....... ..
 
   157..160.........170.........180.......
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Query Sequence  KPLAPSGRAASLLASVKAEWSTKNYSCEAKN
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Template Sequence  LTADKSSSTAYMQLSSLTSVDSAVYFCARSG
Template Known Secondary structure 
GGGT


S

TTT
B

B

B

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   10691070.........1080.........1090.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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