Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank167Aligned Residues179
% Identity17%Templatec1f3rB_
PDB info PDB header:immune systemChain: B: PDB Molecule:fv antibody fragment; PDBTitle: complex between fv antibody fragment and an analogue of the2 main immunogenic region of the acetylcholine receptor
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
Predicted Secondary structure 









............................
Query SS confidence 































. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    

  


 
     
               ............................
Alig confidence 





















...






............................
Template Conservation 
 


 
 
 
 
         ...  
 
                              
Template Sequence  VRPSETLSLTCTVSGFSLTSFS. . . VSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLS
Template Known Secondary structure 
TTSSS
TTTS
...
TTS


SSS

SSSSTT
Template Predicted Secondary structure 









...

















Template SS confidence 



























































   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100....
Predicted Secondary structure  .

















................
Query SS confidence  .










































. . . . . . . . . . . . . . . .
Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLD. . . . . . . . . . . . . . . .
Query Conservation  .          
 
  
   
 
 
 
 
 
             ................
Alig confidence  .










































................
Template Conservation             
 
  
   
 
 
 
              
 
                
Template Sequence  ISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGS
Template Known Secondary structure  TTTTS

TT

SSSS

SS






SS

SS
Template Predicted Secondary structure 
























Template SS confidence 



























































   6970.........80.........90.........100.........110.........120........
 
   105....110.........120.........130.........140.........150
Predicted Secondary structure  ..





















............
Query SS confidence  . .













































. . . . . . . . . . . .
Query Sequence  . . IQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYI. . . . . . . . . . . .
Query Conservation  ..                    
  
    
 
            
 
............
Alig confidence  ..













































............
Template Conservation                           
                                  
Template Sequence  GGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYN
Template Known Secondary structure 

SSS





S
TS


TT


SS

BT

TTS

T
Template Predicted Secondary structure 

























Template SS confidence 



























































   129130.........140.........150.........160.........170.........180........
 
   151........160.........170.........180.........190.........200.....
Predicted Secondary structure  .....

















Query SS confidence  . . . . .






















































Query Sequence  . . . . . NGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
Query Conservation  ..... 
               
 
  
   
 
 
 
 
 
  
   
    
 
    
Alig confidence  .....









































.











Template Conservation            
           
 
  
   
 
 
 
 
 
     .   
 
 
    
Template Sequence  TNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTF. GAGTKLELKAAE
Template Known Secondary structure  TT
TT

TTBT
S

GGG
SSSS.





SSS
Template Predicted Secondary structure 


















.



Template SS confidence 



























































   189190.........200.........210.........220.........230..... ....240.......
 
   206...210..
Predicted Secondary structure 






Query SS confidence 






Query Sequence  TAWIKSN
Query Conservation         
Alig confidence 






Template Conservation         
Template Sequence  QKLISEE
Template Known Secondary structure 





Template Predicted Secondary structure 






Template SS confidence 






   248.250....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D