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Job DescriptionA1YIY0
Confidence99.88%DateTue Jul 30 13:19:15 BST 2013
Rank61Aligned Residues170
% Identity12%Templatec1qgc4_
PDB info PDB header:virus/immune systemChain: 4: PDB Molecule:protein (immunoglobulin); PDBTitle: structure of the complex of an fab fragment of a neutralizing antibody2 with foot and mouth disease virus
Resolution30.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60...
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHV. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTIS
Template Known Secondary structure 
TT

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GGGS
TTT
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GGGTTT
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   230.........240.........250.........260.........270.........280.........
 
   64.....70.........80.........90.........100 .........110.........
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Query Sequence  . IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKS. . . GYLDIQFWTPVSHPVLTLQ
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Template Sequence  RDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPL
Template Known Secondary structure  TTTT
S

GGG



SSS




SB



SS

B

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   290.........300.........310.........320.........330.........340.........
 
   120.........130.........140.... .....150.........160... ......170..
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . RAASLLASV
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Template Sequence  APGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVP
Template Known Secondary structure 


GGG

SSS
BSS

GGGT

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TT
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   350.........360.........370.........380.........390.........400.........
 
   173......180.........190.........
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Query Sequence  KAEWSTKNYSCEAKNNISREISELKKF
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Template Sequence  SSTWPSETVTCNVAHPASSTKVDKKIV
Template Known Secondary structure  S

GGGT

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   410.........420.........430......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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