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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank249Aligned Residues173
% Identity14%Templatec2vl5D_
PDB info PDB header:immune systemChain: D: PDB Molecule:ciic1 anticollagen fab; PDBTitle: structure of anti-collagen type ii fab ciic1
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPASLTVS. . . LGQRATISCRASKSVDSYG. NSFMEWYQQKPGQPPKLLIYRASNLESGI
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S...TTS
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TT.

TTS

TTT
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   7..10.... .....20.........30... ......40.........50.........60..
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PARFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPYTFGGGTKLEIKRADAAPTVSIF
Template Known Secondary structure 
TTTT
S

GGG

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B

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   63......70.........80.........90.........100.........110.........120..
 
   118.120.........130......... 140.........150.........160.... .
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . . A
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Template Sequence  PPSSE. . QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
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..TBSS

TT
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TTT

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   123.... ..130.........140.........150.........160.........170.........180
 
   166...170.........180.........190.........200..
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  STLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFN
Template Known Secondary structure  TT
S
TT
S...S
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   181........190.........200...... ...210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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