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Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank175Aligned Residues174
% Identity13%Templatec1kcvL_
PDB info PDB header:immune systemChain: L: PDB Molecule:pc282 immunoglobulin; PDBTitle: crystal structure of antibody pc282
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50..... ....60..
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFY. . . . . . . . . . . . . . . . . . TFYKNNH
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Template Sequence  SPKSMGMS. . . VGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFT
Template Known Secondary structure  S
S...TT

SS

TT

TTS

TTT
TT

TT
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   7..10.... .....20.........30.........40.........50.........60...
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
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Template Sequence  GSGSATDFTLTISSVQADDDADYYCGQSYSSPLTFGGGTKLELKRADAAPTSSIFPPSSE
Template Known Secondary structure  TTSS

GGG

SSSS






B




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   64.....70.........80.........90.........100.........110.........120...
 
   123......130......... 140.........150.........160..... ....170
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Query Sequence  TNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGRA. . . . . . . . . . . ASLLA
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Template Sequence  . . QLSSGGASVVCFLNSFYPKSIAVKWKVDGSKRANGTANSWTDQDSASSTYSMSSTLTL
Template Known Secondary structure  ..TTTBSS

TT
TT



TTT

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   124.....130.........140.........150.........160.........170.........180.
 
   171........180.........190.........200..
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Query Sequence  SVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  TKDKYERHNSYTCEATHKTSSSP. . . VVKSFN
Template Known Secondary structure  T


TT
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   182.......190.........200.... .....210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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