Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank256Aligned Residues171
% Identity14%Templatec2fbjL_
PDB info PDB header:immunoglobulinChain: L: PDB Molecule:iga-kappa j539 fab (light chain); PDBTitle: refined crystal structure of the galactan-binding immunoglobulin fab2 j539 at 1.95-angstroms resolution
Resolution1.95 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30. ........40.........50.........60.
Predicted Secondary structure 


....







..................
Query SS confidence 







. . . .





























. . . . . . . . . . . . . . . . . .
Query Sequence  ELTEFTNS. . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . .
Query Conservation   
      ....

  


 
     
               ..................
Alig confidence 







....
















......






..................
Template Conservation   

  
    
  
  
 
 
        ......
 
 
                    
Template Sequence  VLTQSPAITAASLGQKVTITCSASSSVSS. . . . . . LHWYQQKSGTSPKPWIYEISKLASG
Template Known Secondary structure 
SSTT

SS

S......
TTS

TTT
TT
Template Predicted Secondary structure 










......












Template SS confidence 



























































   3......10.........20.........30. ........40.........50......
 
   62.......70.........80.........90.........100.........110......
Predicted Secondary structure  .....

























Query SS confidence  . . . . .






















































Query Sequence  . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVL
Query Conservation  .....          
 
  
   
 
 
 
 
 
                         
Alig confidence  .....

































..


















Template Conservation                 
 
      
 
   
        ..                   
Template Sequence  VPARFSGSGSGTSYSLTINTMEAEDAAIYYCQQWTYPLI. . TFGAGTKLELKRADAAPTV
Template Known Secondary structure 

TTTTSS

GGG
TT..





B

Template Predicted Secondary structure 

















..












Template SS confidence 



























































   57..60.........70.........80.........90..... ....100.........110....
 
   117..120.........130......... 140.........150.........160....
Predicted Secondary structure 








.












...........
Query SS confidence 






















.
























. . . . . . . . . . .
Query Sequence  TLQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . .
Query Conservation          
  
    
 
    .        
 
 
            ...........
Alig confidence 






















.
























...........
Template Conservation                                                              
Template Sequence  SIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSM
Template Known Secondary structure 


TTBSS

TT
TT



TTT

Template Predicted Secondary structure 
























Template SS confidence 



























































   115....120.........130.........140.........150.........160.........170....
 
   165....170.........180.........190.........200.....
Predicted Secondary structure 









Query SS confidence 








































Query Sequence  AASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
Query Conservation     
 
  
   
 
 
 
 
 
  
   
    
 
    
Alig confidence 




























...








Template Conservation   
 
 
      
 
 


 
 
      ...   

    
Template Sequence  SSTLTLTKDEYERHNSYTCEATHKTSTSP. . . IVKSFNRNE
Template Known Secondary structure  T


TT
SS
...


Template Predicted Secondary structure 






...

Template SS confidence 








































   175....180.........190.........200... ......210..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D