Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank327Aligned Residues157
% Identity10%Templatec1kfaI_
PDB info PDB header:immune systemChain: I: PDB Molecule:monoclonal antibody heavy chain; PDBTitle: crystal structure of fab fragment complexed with2 gibberellin a4
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50......... 60
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . N
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Template Sequence  VKPGGSLKLSCAASGFTFSSYA. . . MSWVRQTPERRLEWVATITTRGYTFYPDSVKGRFT
Template Known Secondary structure 
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   12.......20.........30... ......40.........50.........60........
 
   61........70.........80.........90.........100.........110.........120
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Query Sequence  NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQH
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Template Sequence  VSRDNARNTLNLQMSSLRSEDTAMFYCTREGLLLDYFTMDYWGQGTSV. . . . TVSSAKTT
Template Known Secondary structure  TTTT
S

GGG


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B
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   70.........80.........90.........100.........110....... ..120.....
 
   121........130.........140.........150.........160... ......170.
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Query Sequence  EATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . . RAASLLAS
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Template Sequence  PPSVYPLAPMVTLGCLVKGYFP. EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV.
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BS.S

GGGTB
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   131........140.........150.. .......160.........170.........180........
 
   172.......180.........190.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISE
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Template Sequence  PSSSRPSETVTCNVAHPASSTKVD
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   197..200.........210.........220
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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