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Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank311Aligned Residues162
% Identity12%Templatec3s6cA_
PDB info PDB header:immune system, lipid binding proteinChain: A: PDB Molecule:beta-2-microglobulin, t-cell surface glycoprotein cd1e, PDBTitle: structure of human cd1e
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70 ..
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Query Sequence  ELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPH. . . . . . . . . . . SV
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Template Sequence  VYSRHPAENGKSNFLNCYVSGFHPSDIE. . . VDLLKNGERIEKVEHSDLSFSKDWSFYLL
Template Known Secondary structure  SS


SSS
BSS

...TT
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TTS
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   10091010.........1020.........1030...... ...1040.........1050.........1060.....
 
   73......80.........90.........100........
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Query Sequence  FSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDMDQLSFRMLQTSSFANHSWAHSEGSGW
Template Known Secondary structure 


SS


TT
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S
SS

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   1066...1070.........1080.........1090.........1100.........1110.........1120.....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LGDLQTHGWDTVLGTIRFLKPWSHGNFSKQELKNLQSLFQLYFHSFIRIVQASAGQFQLE
Template Known Secondary structure  TTTTTT

SGGGGTT

TTTTT

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   28.30.........40.........50.........60.........70.........80.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YPFEIQILAGCRMNAPQIFLNMAYQGSDFLSFSWEPSPGAGIRAQNICKVLNRYLDIKEI
Template Known Secondary structure  SS

SSS


BSSS





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   88.90.........100.........110.........120.........130.........140.......
 
   109110.........120.........130.........140.... .
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. F
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Template Sequence  LQSLLGHTCPRFLAGLMEAGESELKRKVKPEAWLSCGPSPGPGRLQLVCHVSGFYPKPVW
Template Known Secondary structure  TTTTS

B




B





SSS


B
S
BSS
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   151........160.........170.........180.........190.........200.........210
 
   146...150.........160.. .......170.........180........
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Query Sequence  YSFYINGEILGKPLAPS. . . . . . GRAASLLASVKAEWSTKNYSCEAKNN
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Template Sequence  VMWMRGEQEQRGTQRGDVLPNADETWYLRATLDVAAGEAAGLSCRVKHS
Template Known Secondary structure 
STT


TT



TTT



TT

T
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   211........220.........230.........240.........250.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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