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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank214Aligned Residues166
% Identity16%Templatec2qhrL_
PDB info PDB header:immune system/viral proteinChain: L: PDB Molecule:13f6-1-2 fab fragment v lambda x light chain; PDBTitle: crystal structure of the 13f6-1-2 fab fragment bound to its2 ebola virus glycoprotein peptide epitope.
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60..
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . . . . . . . .
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Template Sequence  QSSSASFS. . . LGASAKLTCTLSRQHSTYTIE. . . . WYQQQPLKPPRYVMELKKDGSHST
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S...TT


GGGTT

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   7..10.... .....20.........30..... ....40.........50.........
 
   63......70.........80.........90.........100 .........110
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Query Sequence  . . . . . . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKS. . . GYLDIQFWTP
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Template Sequence  GDGIPDRFSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP
Template Known Secondary structure 
TT

TTTTSS

GGG
TT


S

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   55....60.........70.........80.........90.........100.........110....
 
   111........120.........130.........140.... .....150.........160...
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Query Sequence  VSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . .
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Template Sequence  KSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGN
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B




TTBSS

TT
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   111........120.........130.........140.........150.........160.........170
 
   164.....170.........180.........190...
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Query Sequence  . . . RAASLLASVKAEWSTKNYSCEAKNNISREI
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Template Sequence  KFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVE
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TT
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   171........180.........190.........200...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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