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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank146Aligned Residues173
% Identity14%Templatec3f58L_
PDB info PDB header:immune systemChain: L: PDB Molecule:protein (immunoglobulin gamma i (58.2)); PDBTitle: igg1 fab fragment (58.2) complex with 12-residue cyclic2 peptide (including residues 315-324 of hiv-1 gp120 (mn3 isolate); h315s mutation
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . . .
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Template Sequence  SPASLAVS. . . LGQRATISCKASQGVDFDGAS. FMNWYQQKPGQPPKLLIFAASTLESGI
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S...TTS
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B
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B.

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TT
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   7..10.... .....20.........30..... ....40.........50.........60..
 
   61........70.........80.........90.........100.........110.......
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Query Sequence  . . . NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PARFSGRGSGTDFTLNIHPVEEEDAATYYCQQSHEDPL. . TFGAGTKLELKRADAAPTVS
Template Known Secondary structure 
TTTTSS

GGG
S
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B

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   5960.........70.........80.........90...... ...100.........110......
 
   118.120.........130......... 140.........150.........160.... .
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . . A
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Template Sequence  IFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
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TTBSS
TT

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TTT

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   117..120.........130.........140.........150.........160.........170......
 
   166...170.........180.........190.........200..
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  STLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFN
Template Known Secondary structure  TT

TT
S...S
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   177..180.........190.........200.. .......210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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