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Job DescriptionA1YIY0
Confidence99.88%DateTue Jul 30 13:19:15 BST 2013
Rank55Aligned Residues167
% Identity10%Templatec1hzhK_
PDB info PDB header:immune systemChain: K: PDB Molecule:immunoglobulin heavy chain; PDBTitle: crystal structure of the intact human igg b12 with broad and potent2 activity against primary hiv-1 isolates: a template for hiv vaccine3 design
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70 .......
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Query Sequence  ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPH. . . . . . . . . . . . . . SVFSAEA
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Template Sequence  ISRTPEVTCVVVDVSHEDPEV. KFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQ
Template Known Secondary structure  TTS


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   266...270.........280...... ...290.........300.........310.........320....
 
   78.80.........90.........100.........110.........120.........130.......
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Query Sequence  KEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEA
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Template Sequence  DWLNGKEYKCKVSNKALPAPIEKT. . ISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLV
Template Known Secondary structure  TT


TT
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S

B




GGGGGSS
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   331........340.........350.... .....360.........370.........380........
 
   138.140.... .....150.........160..... ....170.........180.......
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Query Sequence  HQGSLPI. FYSFYINGEILGKPLAPSGRA. . . . . . . . . ASLLASVKAEWSTKNYSCEAKN
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Template Sequence  KGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH
Template Known Secondary structure  BSS

TT






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   393......400.........410.........420.........430.........440.........450..
 
   188.190.........200.
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Query Sequence  NISREISELKKFPL
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Template Conservation         
      
Template Sequence  EALHNHYTQKSLSL
Template Known Secondary structure  TTSGGG

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   461........470....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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