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Job DescriptionA1YIY0
Confidence99.72%DateTue Jul 30 13:19:15 BST 2013
Rank352Aligned Residues165
% Identity13%Templatec2zclH_
PDB info PDB header:immune systemChain: H: PDB Molecule:monoclonal antibody 8g8f5 fab; PDBTitle: crystal structure of human prostate specific antigen complexed with an2 activating antibody
Resolution3.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGASVKLSCKASGYTFTTYY. . . INWMRQRPGQGLEWIGRIAPASGTTYSSEMFKDKA
Template Known Secondary structure 
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   12.......20.........30... ......40.........50.........60........
 
   60.........70.........80.........90.........100....... ..110....
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Query Sequence  NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQF. . . . . WTPVSHP
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Template Sequence  TLTVDTSSNTAYIQLSSLSSEDSAVYFCARADYGFNSGEAMDYWGQGTSVTVSSAKTTAP
Template Known Secondary structure  GGGT
S

GGG



STTSTT






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B

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   68.70.........80.........90.........100.........110.........120.......
 
   115....120.........130.........140.........150.........160... ....
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Query Sequence  VLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . RAAS
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Template Sequence  PVYPLAPVCGDTTGSSVTLGCLVKGYFPESVTLLWNSGSLSSGVHTFPAVLQSDLYTLSS
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   120.........130.........140.........150.........160.........170.........
 
   168.170.........180.........190.......
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Query Sequence  LLASVKAEWSTKNYSCEAKNNISREISELK
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Template Sequence  SVTVTSSTWPSQSITCNVAHPASSTKVDKK
Template Known Secondary structure 
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   180.........190.........200.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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