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Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank160Aligned Residues173
% Identity14%Templatec3cvhL_
PDB info PDB header:immune systemChain: L: PDB Molecule:25-d1.16 light chain; PDBTitle: how tcr-like antibody recognizes mhc-bound peptide
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30.........40.........50.........60.
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Query Sequence  AQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . .
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Template Sequence  IQVTQSSSSFSVS. . . LGDRVTITCKASEDIYN. . . . . RLAWYQQKPGNAPRLLISGATS
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S
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   1........10... ......20.........30 .........40.........50..
 
   62.......70.........80.........90.........100.........110..
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Query Sequence  . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVS
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Template Sequence  LETGVPDRFSGSGSRKDYTLIITSLQTEDVATYYCQQYWSTPLTFGAGTKLELKRADAAP
Template Known Secondary structure 
TT

TTTTSS

GGG
S
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B

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   53......60.........70.........80.........90.........100.........110..
 
   113......120.........130......... 140.........150.........160....
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Query Sequence  HPVLTLQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGR. . . . . . .
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Template Sequence  TVSIFPPSSE. . QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDS
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..TTBSS

TT
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   113......120.. .......130.........140.........150.........160.........170
 
   165....170.........180.........190.........200.
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Query Sequence  . . . . AASLLASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  TYSMSSTLTLTKDEYERHNSYTCEATHK. . . TSTSPIVKSF
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T
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T...T
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   171........180.........190........ .200........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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