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Job DescriptionA1YIY0
Confidence99.60%DateTue Jul 30 13:19:15 BST 2013
Rank418Aligned Residues154
% Identity14%Templatec1fh5H_
PDB info PDB header:immune systemChain: H: PDB Molecule:monoclonal antibody mak33; PDBTitle: crystal structure of the fab fragment of the monoclonal2 antibody mak33
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPAGSLKLSCAASGFTFSSYY. . . MYWVRQTPDKRLEWVATISDGGSYTYYPDSVKGRF
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   910.........20.........30 .........40.........50.........60.....
 
   61........70.........80.........90.........100.........110.........
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Query Sequence  . NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  TISRDNAKNNLYLQMSSLKSEDTAMYYCARDAMDYWGQGTLVTVSAAKTTPPS. . . . . . .
Template Known Secondary structure  TTTT
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   66...70.........80.........90.........100.........110........
 
   120.........130.........140.... .....150.........160... ......170..
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . RAASLLASV
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Template Sequence  . . . . . . VYPLAVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVT
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   128.130.........140.........150.........160.........170.........180.
 
   173......180.........190.........
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Query Sequence  KAEWSTKNYSCEAKNNISREISELKKF
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Template Sequence  SSTWPSETVTCNVAHPASSTKVDKKIV
Template Known Secondary structure  TTTTTTS
GGGT
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   187..190.........200.........210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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