Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank225Aligned Residues171
% Identity13%Templatec1fskB_
PDB info PDB header:immune systemChain: B: PDB Molecule:immunoglobulin kappa light chain; PDBTitle: complex formation between a fab fragment of a monoclonal2 igg antibody and the major allergen from birch pollen bet3 v 1
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50..... ....60........
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFY. . . . . . . . . . . . . . . . . . TFYKNNHVIQDRS
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Template Sequence  SMSVSVGERVTLSCKASENVDTYVFWFQQKPDQSPKLLLYGPSNRYTGVPDRFTGSGSTT
Template Known Secondary structure  TT

SS

TT

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SSTT
B
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TTTT
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   10.........20.........30.........40.........50.........60.........
 
   6970.........80.........90.........100.........110.........120........
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Query Sequence  PHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVG
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Template Sequence  DFTLTISSVQAEDLADYHCGQSYSYPYTFGGGTKLEIKRADAAPTVSIFPPSSE. . QLTS
Template Known Secondary structure  SS

SS


SSSS






B





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   70.........80.........90.........100.........110.........120... ....
 
   129130......... 140.........150.........160...... ...170......
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Query Sequence  DKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGRAA. . . . . . . . . . . SLLASVKAEW
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Template Sequence  GGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYE
Template Known Secondary structure  TBSS

TT
TT

B



TTT

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   128.130.........140.........150.........160.........170.........180.......
 
   177..180.........190.........200..
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Query Sequence  STKNYSCEAKNNISREISELKKFPLV
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Template Sequence  RHNSYTCEATHKTSTSP. . . IVKSFN
Template Known Secondary structure  T


SS
SS
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   188.190.........200.... .....210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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