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Job DescriptionA1YIY0
Confidence99.71%DateTue Jul 30 13:19:15 BST 2013
Rank364Aligned Residues166
% Identity14%Templatec1c5dA_
PDB info PDB header:immune systemChain: A: PDB Molecule:monoclonal antibody against the main immunogenic region of PDBTitle: the crystal structure of the fab fragment of a rat monoclonal antibody2 against the main immunogenic region of the human muscle acetylcholine3 receptor
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60 ..
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . NH
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Template Sequence  SPPSLSAS. . . LGDKVTITCQASQDINKYIAWYQQKPGKAPRQLIRYTSILVLGTPSRFS
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S...TT
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TT

TTS

TTT
TT

TT
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   7..10.... .....20.........30.........40.........50.........60...
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
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Template Sequence  GSGSGRDFSFSISNVASEDIASYYCLQYGNLYTFGAGTKLEIKRADAA. . . PTVSIFPPS
Template Known Secondary structure  TTT

GGG
S
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B
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   64.....70.........80.........90.........100.........110. ........120
 
   123......130......... 140.........150.........160.... .....170
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Query Sequence  TNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . . AASLLA
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Template Sequence  TEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSL
Template Known Secondary structure  TTBSS




TT
TT



TTTS
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   121........130.........140.........150.........160.........170.........180
 
   171........180.........190..
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Query Sequence  SVKAEWSTKNYSCEAKNNISRE
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Template Sequence  TKADYESHNLYTCEVVHKTSSS
Template Known Secondary structure  TT







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   181........190.........200..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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