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Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank171Aligned Residues163
% Identity13%Templatec1seqL_
PDB info PDB header:immune systemChain: L: PDB Molecule:monoclonal antibody mnac13; PDBTitle: fab mnac13
Resolution1.78 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPAIMSAS. . . LGSSVTLTCSASSSVSY. . . . . . MHWYQQKSGTSPVLLIYTTSNLASGV
Template Known Secondary structure  SSS
...TT

SS

S
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TTS

TTT
TT
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   7..10.... .....20.........30. ........40.........50.......
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PSRFSGSGSGTFYSLTISSVEASDAADYYCHQWSSYPWTFGGGTKLEIKRADAAPTVSIF
Template Known Secondary structure 
TTTTSS

GGG

SSSS







B

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   5960.........70.........80.........90.........100.........110........
 
   118.120.........130......... 140.........150.........160.... .
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . . A
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Template Sequence  PPSSE. . QLTSGGASVVCFLNNFYPKSINSKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
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..TTBSS

TT
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TTT

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   118.120.. .......130.........140.........150.........160.........170.....
 
   166...170.........180.........190....
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREIS
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Template Sequence  STLTLTKNEYERHNSYTCEATHKSPIVKS
Template Known Secondary structure  T





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   176...180.........190.........200....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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