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Job DescriptionA1YIY0
Confidence99.70%DateTue Jul 30 13:19:15 BST 2013
Rank379Aligned Residues165
% Identity13%Templatec1mimH_
PDB info PDB header:immunoglobulinChain: H: PDB Molecule:chimeric sdz chi621; PDBTitle: igg fab fragment (cd25-binding)
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60..
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VLARPGASVKMSCKASGYSFTRYW. . . MHWIKQRPGQGLEWIGAIYPGNSDTSYNQKFEG
Template Known Secondary structure 
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GGGTT
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   8.10.........20.........30. ........40.........50.........60....
 
   63......70.........80.........90.........100.........110.......
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Query Sequence  . . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Conservation 
            

 
  
   
 
 
 
 
                            
Template Sequence  KAKLTAVTSASTAYMELSSLTHEDSAVYYCSRDYGYYFDFWGQGTTLTVSSASTKGPSVF
Template Known Secondary structure  TGGGTS

GGG

SSS



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B

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   65....70.........80.........90.........100.........110.........120....
 
   118.120.........130......... 140.........150.........160...... ...
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGRAA. . . . . . . SLL
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Template Conservation                                 
                   
     
 
Template Sequence  PLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVV
Template Known Secondary structure  TTTTTTSBSS
GGGTB
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   125....130.........140.........150.........160.........170.........180....
 
   170.........180.........190.....
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Query Sequence  ASVKAEWSTKNYSCEAKNNISREISE
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Template Conservation   
         
 
 
 
      
 
Template Sequence  TVPSSSLGTQTYICNVNHKPSNTKVD
Template Known Secondary structure  GGGGGT


TTTT
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   185....190.........200.........210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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