Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.75%DateTue Jul 30 13:19:15 BST 2013
Rank319Aligned Residues174
% Identity14%Templatec1yntC_
PDB info PDB header:immune systemChain: C: PDB Molecule:4f11e12 fab variable light chain region; PDBTitle: structure of the immunodominant epitope displayed by the surface2 antigen 1 (sag1) of toxoplasma gondii complexed to a monoclonal3 antibody
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50...... ...60.........
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYT. . . . . . . . . . . . . . . . . . FYKNNHVIQDRSP
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Template Sequence  LSASLGDRVTISCRASQDISNYLNWYQQKPDGTVKLLIYYTSRLHSGVPSRFSGSGSGTD
Template Known Secondary structure 

B
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   1011........1020.........1030.........1040.........1050.........1060.........1070
 
   70.........80.........90.........100.........110.........120.........
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Query Sequence  HSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGD
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Template Sequence  YSLTISNLEQEDIATYFCQQGNTLPYTFG. GGTKLEIKRADAAPTVSIFPPSSEQLTSGG
Template Known Secondary structure  SS

GGG
S
SSSS

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B



B





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   1071........1080.........1090......... 1100.........1110.........1120.........
 
   130.........140.........150.........160.... .....170........
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Query Sequence  KVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . . AASLLASVKAEWST
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Template Sequence  ASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH
Template Known Secondary structure 

BSS



TT

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TT
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   1130.........1140.........1150.........1160.........1170.........1180.........
 
   179180.........190.........200.....
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Query Sequence  KNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  NSYTCEATHKTSTSP. . . IVKSFNRNE
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   1190.........1200.... .....1210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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