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Job DescriptionA1YIY0
Confidence99.90%DateTue Jul 30 13:19:15 BST 2013
Rank42Aligned Residues174
% Identity13%Templatec3mjgX_
PDB info PDB header:hormone/transferaseChain: X: PDB Molecule:beta-type platelet-derived growth factor receptor; PDBTitle: the structure of a platelet derived growth factor receptor complex
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60... ......70
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Query Sequence  QFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHV. . . . . . . . IQDRSPH
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Template Sequence  LVVTPPGPELVLNVSSTFVLTCSGSAP. . . . . . . . . VVWERMSQEPPQEMAKAQDGTFSS
Template Known Secondary structure 

B
SS
S

TT

SS
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BTTB

S
TTS
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   33......40.........50......... 60.........70.........80...
 
   71........80.........90.........100........
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Query Sequence  SVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VLTLTNLTGLDTGEYFCTHNDDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPC
Template Known Secondary structure 
S

GGG









TT

B



SS




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   84.....90.........100.........110.........120.........130.........140...
 
   109
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T
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Template Sequence  RVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRL
Template Known Secondary structure 
BS
TTS
SS

S




TTT


SSTT



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   150.........160.........170.........180.........190.........200.........
 
   110.........120.........130.........140.........150.........160...
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Query Sequence  PVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . .
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Template Sequence  QVSSINVSVNAVQTVVRQGENITLMCIVIGNEV. VNFEWTYPRKESGRLVEPVTDFLLDM
Template Known Secondary structure 






S
STTS
S
SS.

TTSSSS




S
TT
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   210.........220.........230.........240.. .......250.........260........
 
   164.....170.........180.........190.........200...
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Query Sequence  . . . RAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVV
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Template Conservation         
 
  
   
 
 
 
 
 
  
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Template Sequence  PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDE. KAINITV
Template Known Secondary structure  TTSS

SS

TTTT.
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   269270.........280.........290.........300... ......310
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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