Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.94%DateTue Jul 30 13:19:15 BST 2013
Rank11Aligned Residues173
% Identity19%Templatec3p3yA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:neurofascin; PDBTitle: crystal structure of neurofascin homophilic adhesion complex in space2 group p6522
Resolution2.60 Å
Model Dimensions (Å)X:63.223 Y:52.791 Z:31.342

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30. ........40.........50.........60.........70
Predicted Secondary structure 




.....













......
Query SS confidence 









. . . . .






































. . . . . .
Query Sequence  NPELTEFTNS. . . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPH. . . . . .
Query Conservation   
 
      .....

  


 
     
                        ......
Alig confidence 









.....
















.....
















......
Template Conservation 

 
   
     
  
  
 
 
   
 
 
..... 
 
 
 
  
            
Template Sequence  PPTITKQSAKDHIVDPRDNILIECEAKGNPAP. . . . . SFHWTRNSRFFNIAKDPRVSMRR
Template Known Secondary structure 




TT

SSS






SS

.....TT

GGG
SS
B

S
Template Predicted Secondary structure 














.....







Template SS confidence 



























































   40.........50.........60.........70. ........80.........90....
 
   71........80.........90.........100........
Predicted Secondary structure  .......















...............
Query SS confidence  . . . . . . .





































. . . . . . . . . . . . . . .
Query Sequence  . . . . . . . SVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . .
Query Conservation  ....... 
 
  
   
 
 
 
 
 
                 ...............
Alig confidence  .......





































...............
Template Conservation          
 
      
 
 
 
 
 
                                
Template Sequence  RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQE
Template Known Secondary structure  SS


B


TTT

TTSS

SS













T
Template Predicted Secondary structure 

















Template SS confidence 



























































   95....100.........110.........120.........130.........140.........150....
 
  
Predicted Secondary structure  ............................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation       
                                                      
Template Sequence  GAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCN
Template Known Secondary structure  TS







SS


TTS
B



SS
TTS
SS

SGGGSS
B
Template Predicted Secondary structure 




























Template SS confidence 



























































   155....160.........170.........180.........190.........200.........210....
 
  
Predicted Secondary structure  ............................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  ARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVP
Template Known Secondary structure 
TTT




B


S







BSSS
SSTTS


B

SS
Template Predicted Secondary structure 
























Template SS confidence 



























































   215....220.........230.........240.........250.........260.........270....
 
   109110.
Predicted Secondary structure  .........................................................


Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPV
Query Conservation  .........................................................   
Alig confidence  .........................................................


Template Conservation                              
      
 
                      
Template Sequence  TPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVK
Template Known Secondary structure 

TTB


TTTGGGTSS

GGG

SS
Template Predicted Secondary structure 



















Template SS confidence 



























































   275....280.........290.........300.........310.........320.........330....
 
   112.......120.........130.........140.........150.........160 ........
Predicted Secondary structure 




















...

Query SS confidence 
















































. . .







Query Sequence  SHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLA. . . PSGRAASL
Query Conservation               
  
    
 
            
 
 
        ...       
Alig confidence 






























.
















...







Template Conservation                  
    
 
   
 
 .
 
 
 


  
               
Template Sequence  AAPYWLDEPKNLILAPGEDGRLVCRANGNPK. PTVQWMVNGEPLQSAPPNPNREVAGDTI
Template Known Secondary structure 




TT


S
.
TTGGGS


TTTT
Template Predicted Secondary structure 









.











Template SS confidence 



























































   335....340.........350.........360..... ....370.........380.........390...
 
   169170.........180.........190.........200.
Predicted Secondary structure 







Query SS confidence 
































Query Sequence  LASVKAEWSTKNYSCEAKNNISREISELKKFPL
Query Conservation   
  
   
 
 
 
 
 
  
   
    
 
Alig confidence 


























.




Template Conservation   
  
   
 
 
 
 
 
  
     .  
 
Template Sequence  IFRDTQISSRAVYQCNTSNEHGYLLAN. AFVSV
Template Known Secondary structure  SS

SS


TT.
Template Predicted Secondary structure 




.
Template SS confidence 
































   394.....400.........410.........420 .....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D