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Job DescriptionA1YIY0
Confidence99.72%DateTue Jul 30 13:19:15 BST 2013
Rank349Aligned Residues163
% Identity12%Templatec1frgH_
PDB info PDB header:viral protein/immune systemChain: H: PDB Molecule:igg2a 26/9 fab (heavy chain); PDBTitle: crystal structure, sequence, and epitope mapping of a2 peptide complex of an anti-influenza ha peptide antibody3 fab 26(slash)9: fine-tuning antibody specificity
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGGFLKLSCAASGFTFSSFG. . . MSWVRHTPDKRLEWVATISNGGGYTYYQDSVKGRF
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   229230.........240.........250 .........260.........270.........280.....
 
   60.........70.........80.........90.........100....... ..110......
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Query Sequence  NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQF. . . WTPVSHPVL
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Template Sequence  TISRDNAKNTLFLEMTSLKSEDAGLYYCARRERYDEKGFAYWGRGTLVTVSAAKTTAPSV
Template Known Secondary structure  TTTTS

GGG


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   286...290.........300.........310.........320.........330.........340.....
 
   117..120.........130.........140.........150.........160... ......
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Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . RAASLL
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Template Sequence  YPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSV
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SSSGGG
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GGGTB
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   346...350.........360.........370.........380.........390.........400.....
 
   170.........180.........190.....
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Query Sequence  ASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  TVTSSTWPSQSITCNVAHPASSTKVD
Template Known Secondary structure  TTTTTTS

GGGT
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   406...410.........420.........430.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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