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Job DescriptionA1YIY0
Confidence99.55%DateTue Jul 30 13:19:15 BST 2013
Rank433Aligned Residues176
% Identity13%Templatec3mtrA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:neural cell adhesion molecule 1; PDBTitle: crystal structure of the ig5-fn1 tandem of human ncam
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20..... ....30.........40.........50.........60.........70.
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Query Sequence  QEQFPNPEL. . TEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . .
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Template Sequence  SHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSA. . . . . TISWFRDGQLLPSSNYSNIKI
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   401........410.........420.........430.... .....440.........450.....
 
   72.......80.........90.........100.........110.........120...
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Query Sequence  . . . . . . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  YNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTA
Template Known Secondary structure  TT


SGGG

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   456...460.........470.........480.........490.........500.........510.....
 
   124.....130.........140.........150.........160... ......170.........
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Query Sequence  NLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . RAASLLASVKAEWSTK
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Template Sequence  QVQF. . . DEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTY
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   516... 520.........530.........540.........550.........560.........570..
 
   180.........190... ......200
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Query Sequence  NYSCEAKNNISREI. SELKKFP
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Template Sequence  AVRLAALNGKGLGEISAASEFK
Template Known Secondary structure  SS
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   573......580.........590....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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