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Job DescriptionA1YIY0
Confidence99.89%DateTue Jul 30 13:19:15 BST 2013
Rank54Aligned Residues170
% Identity14%Templatec2yd9A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:receptor-type tyrosine-protein phosphatase s; PDBTitle: crystal structure of the n-terminal ig1-3 module of human receptor2 protein tyrosine phosphatase sigma
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30. ........40.........50.........60.........70. ..
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Query Sequence  NPELTEFTNS. . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . VF
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Template Sequence  PPRFIKEPKDQIGVSGGVASFVCQATGDPKP. . . . . RVTWNSQRFETIEFDESAGAVLRI
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   32.......40.........50.........60.. .......70.........80......
 
   74.....80.........90.........100........
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Query Sequence  SAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  QPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTAT
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S

TTTT
S
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GGG

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   94.....100.........110.........120.........130.........140.........150...
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  MLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSA
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SS

TT

GGGGTTS
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S

GGG
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   154.....160.........170.........180.........190.........200.........210...
 
   109110.........120.........130.........140.........150.....
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Query Sequence  . . . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEIL
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Template Sequence  GVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPM. PYVKWMQGAEDL
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B


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   214.....220.........230.........240.........250.........260 .........270..
 
   156...160.........170.........180.........190.........200
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Query Sequence  GKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFP
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Template Sequence  TPEDDMPV. . GRNVLELTDVKDSANYTCVAMSSLGVIEAV. AQIT
Template Known Secondary structure  S
SSS

B..S
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S
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   273......280 .........290.........300.........310 ....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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