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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank125Aligned Residues170
% Identity16%Templatec1mcbB_
PDB info PDB header:immunoglobulinChain: B: PDB Molecule:immunoglobulin lambda dimer mcg (light chain); PDBTitle: principles and pitfalls in designing site directed peptide2 ligands
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60..
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . . . . . . . .
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Template Sequence  QPPSASGS. . . LGQSVTISCTGTSSDVGGYNYVS. . WYQQHAGKAPKVIIYEVNKRPSGV
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S
...TT


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TTS
BTTTB

TT
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   6...10... ......20.........30...... ...40.........50.........60
 
   63......70.........80.........90.........100.........110.......
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Query Sequence  . . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PDRFSGSKSGNTASLTVSGLQAEDEADYYCSSYEGSDNFVFGTGTKVTVLGQPKANPTVT
Template Known Secondary structure 
TTTTS

GGG


SSS




SS

B

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   61........70.........80.........90.........100.........110.........120
 
   118.120.........130.........140.... .....150.........160.......
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRAAS. . . . . . . . .
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Template Sequence  LFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASS
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TT
BSS

B

TT

TT



TTSS
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   121........130.........140.........150.........160.........170.........180
 
   168.170.........180.........190.....
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Query Sequence  . LLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  YLSLTPEQWKSHRSYSCQVTHEGSTVEKT
Template Known Secondary structure 
T
S
TT
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   181........190.........200.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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