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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank253Aligned Residues173
% Identity14%Templatec2oz4L_
PDB info PDB header:cell adhesionChain: L: PDB Molecule:fab fragment light chain; PDBTitle: structural plasticity in igsf domain 4 of icam-1 mediates cell surface2 dimerization
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . . .
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Template Sequence  SPAILSVS. . . PGERVSFSCRASQSIGT. . . . . SIHWFQQRINGSPRLLIEYASESISGI
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S
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TTS

TTT
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   7..10.... .....20.........30. ........40.........50........
 
   61........70.........80.........90.........100.........110.......
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Query Sequence  . . . NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PSRFSGSGSGTDFTLTINSVESEDIADYYCQQSNVWPFTFG. SGTKLEIKRADAAPTVSI
Template Known Secondary structure 
TTTTSS

GGG

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B

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   5960.........70.........80.........90......... 100.........110.......
 
   118.120.........130.........140.........150.........160......
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAA. . . . . . . . . . .
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Template Sequence  FPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSS
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TBSS

TT

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   118.120.........130.........140.........150.........160.........170.......
 
   167..170.........180.........190.........200.....
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Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  TLTLTKDEYERHNSYTCEATHKTSTSP. . . IVKSFNRNE
Template Known Secondary structure  TT
S
TT
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   178.180.........190.........200.... .....210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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