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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank132Aligned Residues173
% Identity19%Templatec1f97A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:junction adhesion molecule; PDBTitle: soluble part of the junction adhesion molecule from mouse
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.......
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Query Sequence  QFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDR. . . . . . . . . . .
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Template Sequence  VYTAQ. . SDVQVPENESIKLTCTYSGFSSP. . . . . RVEWKFVQGSTTALVCYNSQITAPY
Template Known Secondary structure 
S
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S
SS.....TTTT
GGG
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   30.... .....40.........50....... ..60.........70.........80..
 
   68.70.........80.........90.........100.........110.........120.
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Query Sequence  . . . . . . SPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHE
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Template Sequence  ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPT. . . . ISV
Template Known Secondary structure  TTTTTS


GGG
TTSSSB




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   83......90.........100.........110.........120.........130..... ...
 
   122.......130.........140.........150....... ..160.........170....
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Query Sequence  ATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGK. . . . . . . PLAPSGRAASLLASVKA
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Template Sequence  PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTTRAFMNSSFTIDPKSGDLIFDPVT
Template Known Secondary structure 
STTS

S

BS

TTSB

BS
SSS

TTT

SS

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   139140.........150.........160.........170.........180.........190........
 
   175....180.........190. ........200..
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Query Sequence  EWSTKNYSCEAKNNISR. EISELKKFPLV
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Template Sequence  AFDSGEYYCQAQNGYGTAMRSEAAHMDAV
Template Known Secondary structure  GGG

SSS




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   204.....210.........220.........230..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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