Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank178Aligned Residues169
% Identity15%Templatec3g04A_
PDB info PDB header:immune systemChain: A: PDB Molecule:human thyroid stimulating autoantibody m22 light chain; PDBTitle: crystal structure of the tsh receptor in complex with a thyroid-2 stimulating autoantibody
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
Predicted Secondary structure 













...................
Query SS confidence 








































. . . . . . . . . . . . . . . . . . .
Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
Query Conservation 
 
 
      

  


 
     
               ...................
Alig confidence 







...



















...






...................
Template Conservation   
  
 
 ... 
  
 
 
           ...
 
                       
Template Sequence  QPPSVSGA. . . PRQRVTISCSGNSSNIGNNA. . . VNWYQQLPGKAPKLLIYYDDQLPSGV
Template Known Secondary structure 

S
...TT



TTTTTTS
...

TTS

BTTTB

TT
Template Predicted Secondary structure 



...









...














Template SS confidence 



























































   6...10... ......20.........30... ......40.........50.........
 
   62.......70.........80.........90......... 100.........110......
Predicted Secondary structure  ....















.









Query SS confidence  . . . .





































.
















Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. SGYLDIQFWTPVSHPVL
Query Conservation  ....          
 
  
   
 
 
 
 
 
        .                 
Alig confidence  ....





































.
















Template Conservation                
 
  
   
 
 
 
 
                            
Template Sequence  SDRFSGSRSGTSASLAIRGLQSEDEADYYCTSWDDSLDSQLFGGGTRLTVLGQPKAAPSV
Template Known Secondary structure 
TTTT
S

GGG
STTTTB






B

Template Predicted Secondary structure 



























Template SS confidence 



























































   5960.........70.........80.........90.........100.........110........
 
   117..120.........130.........140.... .....150.........160.....
Predicted Secondary structure 













.







..........
Query SS confidence 



























.




















. . . . . . . . . .
Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRA. . . . . . . . . .
Query Conservation          
  
    
 
         .   
 
 
             ..........
Alig confidence 



























.




















..........
Template Conservation                                                              
Template Sequence  TLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAAS
Template Known Secondary structure 


TT
BSS

TT
TT



TTS
Template Predicted Secondary structure 























Template SS confidence 



























































   116...120.........130.........140.........150.........160.........170.....
 
   166...170.........180.........190.....
Predicted Secondary structure 







Query SS confidence 





























Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISE
Query Conservation    
 
  
   
 
 
 
 
 
  
   
 
Alig confidence 





























Template Conservation 
 
 
      
 
 


 
 
  
    
Template Sequence  SYLSLTPEQWKSHKSYSCQVTHEGSTVEKT
Template Known Secondary structure 
SS
TT
Template Predicted Secondary structure 






Template SS confidence 





























   176...180.........190.........200.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D