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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank288Aligned Residues168
% Identity13%Templatec2bmkA_
PDB info PDB header:immune systemChain: A: PDB Molecule:fab fragment of catalytic antibody 15a9, light PDBTitle: fab fragment of plp-dependent catalytic antibody 15a9 in2 complex with phosphopyridoxyl-d-alanine
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60. ..
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HV
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Template Sequence  IMAASPGEKVTITCSATSGVNY. . . . . . MHWFQQKPGTSPKLWIYSTSNLASAVPARFSG
Template Known Secondary structure 
TT

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S
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TTS

TTT
TT

TT
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   10.........20.........30. ........40.........50.........60...
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  SGSGTSYSLTISRMEAEDAATYYCQQRSTYPF. . TFGGGTKLELKRADAAPTVSIFPPSS
Template Known Secondary structure  TTSS

GGG

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B




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   65....70.........80.........90...... ...100.........110.........120..
 
   124.....130.........140.... .....150.........160.... .....170.
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Query Sequence  NLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . . . AASLLAS
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Template Sequence  EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT
Template Known Secondary structure  TTBSS
TT
TT



TTTS
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   123......130.........140.........150.........160.........170.........180..
 
   172.......180.........190.........200.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  KDEYERHNSYTCEATHKTSTSP. . . IVKSFNRNE
Template Known Secondary structure  TT
STT
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   183......190.........200.... .....210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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