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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank278Aligned Residues161
% Identity16%Templatec3cjjA_
PDB info PDB header:membrane protein, signaling proteinChain: A: PDB Molecule:advanced glycosylation end product-specific receptor; PDBTitle: crystal structure of human rage ligand-binding domain
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40. ........50.........60......
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Query Sequence  TEFTNSETMDVILKCT. IKVDPKNPTLQLFYTFYKNNHVIQD. . . . . . . . . . . . . . . . . .
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Template Sequence  QNITARIGEPLVLKCKGAPKKPPQ. . . . . RLEWKLNTGRTEAWKVLSPQGGGPWDSVARV
Template Known Secondary structure  TTS


TT

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S

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S
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   24.....30.........40....... ..50.........60.........70........
 
   67..70.........80.........90.........100.........110.........120......
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Query Sequence  RSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLA
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Template Sequence  LPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPG. . KPEIVDSASELTAG
Template Known Secondary structure 
TTS
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GGG

SSSSB


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   7980.........90.........100.........110.........120.. .......130......
 
   127..130.........140.........150.........160..... ....170.
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Query Sequence  VGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRA. . . . . . . . . . . . . . . ASLLAS
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Template Sequence  VPNKVGTCVSEGSYPA. GTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVT
Template Known Secondary structure  S
BS
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TT

TTSTT
TTT


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   137..140.........150.. .......160.........170.........180.........190.....
 
   172....... 180.........190....
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Query Sequence  VKAEWSTK. NYSCEAKNNISREIS
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Template Sequence  PARGGDPRPTFSCSFSPGLPRHRA
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   196...200.........210.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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