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Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank342Aligned Residues163
% Identity13%Templatec1eo8L_
PDB info PDB header:viral protein/immune systemChain: L: PDB Molecule:antibody (light chain); PDBTitle: influenza virus hemagglutinin complexed with a neutralizing antibody
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   27..30.........40.........50.........60. ..
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HV
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Template Sequence  IMSASPGEKVTMTCSASSDISY. . . . . . MHWYQQKSDTSPKIWIYDTSKLASGVPARFSG
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TT


SS

S
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TTS

TTT
TT

TT
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   10.........20.........30. ........40.........50.........60...
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  SGSGTSYSLTISTMEAEDAATYYCHQRSSYPTFGGGTKLEIKRADAA. . . PTVSIFPPSK
Template Known Secondary structure  SSSSS

GGG

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B
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   65....70.........80.........90.........100.........110. ........120.
 
   124.....130.........140.... .....150.........160.... .....170.
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Query Sequence  NLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . . . AASLLAS
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Template Sequence  IQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT
Template Known Secondary structure  TT
BSS

S
TTT



S



SSS


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   122.......130.........140.........150.........160.........170.........180.
 
   172.......180.........190.........200.
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Query Sequence  VKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  KDEYERHNSYTCEATHKTST. . . SPIVKSF
Template Known Secondary structure  TTTGGGSS
TT
S...S
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   182.......190.........200. .......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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