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Job DescriptionA1YIY0
Confidence99.77%DateTue Jul 30 13:19:15 BST 2013
Rank295Aligned Residues170
% Identity18%Templatec1nfdG_
PDB info PDB header:complex (immunoreceptor/immunoglobulin)Chain: G: PDB Molecule:h57 fab; PDBTitle: an alpha-beta t cell receptor (tcr) heterodimer in complex with an2 anti-tcr fab fragment derived from a mitogenic antibody
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.
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Query Sequence  EQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . .
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Template Sequence  ELIQPSSASVT. . . VGETVKITCSGDQLPKNFAY. . . . . WFQQKSDKNILLLIYMDNKRP
Template Known Secondary structure 

B

S...TTS

TTTTTS
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TT

TTS


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   3......10... ......20.........30... ......40.........50....
 
   62.......70.........80.........90......... 100.........110...
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Query Sequence  . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. SGYLDIQFWTPVSH
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Template Conservation                   
 
      
 
 
 
                           
Template Sequence  SGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSS
Template Known Secondary structure  TTS
TTTTTT

GGG
STTTT








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   56...60.........70.........80.........90.........100.........110.....
 
   114.....120.........130.........140.... .....150.........160...
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Query Sequence  PVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . . . .
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Template Sequence  PKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYM
Template Known Secondary structure 






TTB




SS



B
BBSSSB

SS



TTT
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   113......120.........130.........140.........150.........160.........170..
 
   164.....170.........180.........190.....
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Query Sequence  RAASLLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  TSSYLSLTADQWKSHNRVSCQVTHEGETVEKS
Template Known Secondary structure 

BTT
S
B

B


TTTT



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   175....180.........190.........200......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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