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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank247Aligned Residues174
% Identity14%Templatec1bqsA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:protein (mucosal addressin cell adhesion PDBTitle: the crystal structure of mucosal addressin cell adhesion2 molecule-1 (madcam-1)
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........70.........80
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHSVFSAEAKEE
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Template Sequence  PEPVVAVA. . . LGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLS
Template Known Secondary structure 

S...TT



SSS

SS

SSSSSS
S

GG
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   910...... ...20.........30.........40.........50.........60.....
 
   81........90.........100.........110.........120.........130.........140
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Query Sequence  NSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQG
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Template Sequence  AAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPEVAC. . . . TAHKVTPVD
Template Known Secondary structure  G
TTB

S
SSSB
S

S....B

S
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   66...70.........80.........90.........100.........110.. .......120.
 
   141........150.........160.... .....170.........180..
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Query Sequence  SLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . . . . . . . . . AASLLASVKAEWSTKNYS
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Template Conservation         
                                   
 
              
Template Sequence  PNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALY
Template Known Secondary structure  TTS
TT
TT









SSS






SS

S
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   122.......130.........140.........150.........160.........170.........180.
 
   183...... 190.........200.
Predicted Secondary structure 

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Query Sequence  CEAKNNI. SREISELKKFPL
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Template Conservation 
 
                
Template Sequence  CQATMRLPGLELSHRQAIPV
Template Known Secondary structure  TTB
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   182.......190.........200.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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