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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank291Aligned Residues165
% Identity14%Templatec2j6eM_
PDB info PDB header:immune systemChain: M: PDB Molecule:igm; PDBTitle: crystal structure of an autoimmune complex between a human2 igm rheumatoid factor and igg1 fc reveals a novel fc3 epitope and evidence for affinity maturation
Resolution3.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60. ...
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HVI
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Template Sequence  ASGTPGQRVTISCSGSSSNIGSNY. . . VYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGS
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   10.........20.........30... ......40.........50.........60......
 
   65....70.........80.........90......... 100.........110.........120...
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Query Sequence  QDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. SGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  KSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSS
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TTTT

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   66...70.........80.........90.........100.........110.........120.....
 
   124.....130.........140.... .....150.........160... ......170..
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Query Sequence  NLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . . . . . RAASLLASV
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Template Sequence  EELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTP
Template Known Secondary structure  TTTTTT





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   123......130.........140.........150.........160.........170.........180..
 
   173......180.........190.....
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Query Sequence  KAEWSTKNYSCEAKNNISREISE
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Template Sequence  EQWKSHRSYSCQVTHEGSTVEKT
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BTTB

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   183......190.........200.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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