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Job DescriptionA1YIY0
Confidence99.46%DateTue Jul 30 13:19:15 BST 2013
Rank465Aligned Residues90
% Identity13%Templatec2id5D_
PDB info PDB header:ligand binding protein,membrane proteinChain: D: PDB Molecule:leucine rich repeat neuronal 6a; PDBTitle: crystal structure of the lingo-1 ectodomain
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   111........120.........130.........140.........150 .... .....160......
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Query Sequence  VSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYI. NGEI. . . LGKPLAPSGRAA
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Template Sequence  RRARIRDRKAQQVFVDEGHTVQFVCRADGDPP. PAILWLSPRKHLVSAKSNGRLTVFPDG
Template Known Secondary structure  S

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   383......390.........400.........410.... .....420.........430.........440.
 
   167..170.........180.........190.........200..
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Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  TLEVRYAQVQDNGTYLCIAANAGGND. SMPAHLHVR
Template Known Secondary structure 
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GGG
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   442.......450.........460....... ..470......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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