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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank211Aligned Residues170
% Identity20%Templatec1nbqB_
PDB info PDB header:immune systemChain: B: PDB Molecule:junctional adhesion molecule 1; PDBTitle: crystal structure of human junctional adhesion molecule2 type 1
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.........
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSP. . . . . . . . . . .
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Template Sequence  SEPEVRIP. . . ENNPVKLSCAYSGFSSP. . . . . RVEWKFDQGDTTRLVCYNNKITASYED
Template Known Secondary structure  S
SB

...TT



S
SS.....TTSTT
TTTTT
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   34.....40. ........50........ .60.........70.........80.....
 
   70.........80.........90.........100.........110.........120...
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Query Sequence  . . . . . . HSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT. . . . VNIPS
Template Known Secondary structure  T
TT
S


TTS
STTSS




B





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S
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   86...90.........100.........110.........120.........130...... ...140.
 
   124.....130.........140.........150.........160... ......170..
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Query Sequence  NLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . . . . RAASLLASV
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Template Conservation                                                         
 
  
Template Sequence  SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDP
Template Known Secondary structure  TTS





S
BS

TT



SSSSSSSTTTT





TTT

SS
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   142.......150.........160.........170.........180.........190.........200.
 
   173......180.........190.........200...
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Query Sequence  KAEWSTKNYSCEAKNNISREISELKKFPLVV
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Template Sequence  LSASDTGEYSCEARNGYGTPMTS. NAVRMEA
Template Known Secondary structure 

GGG



SSS


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B

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   202.......210.........220.... .....230.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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