Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.62%DateTue Jul 30 13:19:15 BST 2013
Rank411Aligned Residues161
% Identity15%Templatec3dxaN_
PDB info PDB header:immune systemChain: N: PDB Molecule:dm1 t cell receptor alpha chain; PDBTitle: crystal structure of the dm1 tcr in complex with hla-b*4405 and2 decamer ebv antigen
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.
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Query Sequence  EQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . .
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Template Sequence  KTTQPTSMDCA. . . EGRAANLPCNHSTISGNEYVY. . . . WYRQIHSQGPQYIIHGLKNNE
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B

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   3......10... ......20.........30.... .....40.........50.....
 
   62.......70.........80.........90.........100.........110....
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Query Sequence  . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHP
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Template Sequence  TNEMASLIITEDRKSSTLILPHATLRDTAVYYCIVWGGYQKVTFGTGTKLQVIPIQNPDP
Template Known Secondary structure  B
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   68.70.........80.........90.........100.........110.........120.......
 
   115....120.........130.........140.........150.........160... ......170..
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Query Sequence  VLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . RAASLLASV
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Template Sequence  AVYQL. . . . . RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSA
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   132.... ...140.........150.........160.........170.........180......
 
   173......180.........190
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Query Sequence  KAEWSTKNYSCEAKNNIS
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Template Sequence  VAWSNKSDFACANAFNNS
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   187..190.........200....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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