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Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank333Aligned Residues161
% Identity12%Templatec1a3rH_
PDB info PDB header:viral protein/immune systemChain: H: PDB Molecule:igg2a 8f5 fab (heavy chain); PDBTitle: fab fragment (antibody 8f5) complexed with peptide from2 human rhinovirus (serotype 2) viral capsid protein vp23 (residues 156-170)
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ELVRPGASVKLSCTTSGFNIKDIY. . . IHWVKQRPEQGLEWIGRLDPANGYTKYDPKFQG
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TTS
GGG
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   10.........20.........30... ......40.........50.........60......
 
   61........70.........80.........90.........100.........110.......
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Query Sequence  . . . NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Conservation 
             
 
  
   
 
 
 
 
                            
Template Sequence  KATITVDTSSNTAYLHLSSLTSEDTAVYYCDGYYSYYDMDYWGPGTSVTVSSAKTTAPSV
Template Known Secondary structure  TGGGT
S

GGG
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B

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   66...70.........80.........90.........100.........110.........120.....
 
   118.120.........130.........140.... .....150.........160... ......170
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . RAASLLA
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Template Sequence  YPL. . . . APVCSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVT
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BSS

GGGTB
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   122.. .....130.........140.........150.........160.........170.......
 
   171........180.........190.....
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Query Sequence  SVKAEWSTKNYSCEAKNNISREISE
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Template Conservation 
     
 
 


 
 
        
Template Sequence  VTSSTWPSQSITCNVAHPASSTKVD
Template Known Secondary structure  TTTTTTS

GGGT
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   193......200.........210.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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