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Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank302Aligned Residues167
% Identity17%Templatec4f9lD_
PDB info PDB header:immune systemChain: D: PDB Molecule:20.1 anti-btn3a1 antibody fragment; PDBTitle: crystal structure of the human btn3a1 ectodomain in complex with the2 20.1 single chain antibody
Resolution3.14 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60. ...
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HVI
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Template Sequence  LSASLGDTITITCHASQNINL. . . . . WLSWYQQRPGNIPKLLIYRASNLHTGVPSRFSGS
Template Known Secondary structure 

B
TT
SS

TT.....

TTS
TTT
TT

TT
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   11........20.........30. ........40.........50.........60.....
 
   65....70.........80.........90.........100.........110.........120....
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Query Sequence  QDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATN
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Template Sequence  GSATGFTLTISSLQPEDIATYYCQQGHSYPYTFGGGTKLDIKRA. . . . . QVQLQESGAEL
Template Known Secondary structure  TTS

GGG

SSSS

B




B


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   66...70.........80.........90.........100......... 110.........120
 
   125....130.........140.........150....... .
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Query Sequence  LAVGDKVEFLCEAHQGSLPIFYSFYINGEILGK. . . . . . . . . . . . . . . . . . . . . . . . . . P
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Template Sequence  VKPGASVKLSCKASGYTFTRYYLYWVKQRPGQGLEWIGEINPNNGGTKFNEKFKSKATLT
Template Known Secondary structure  SSS
SS
GGGS

TTS

TTT


TTSTTT
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   143......150.........160.........170.........180.........190.........200..
 
   159160.........170.........180.........190...... ...200....
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Query Sequence  LAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISEL. . . . . . KKFPLVVS
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Template Sequence  VDKSSRTTYIQLSSLTSEDSAVYYCSREDDYDGTPDAMDYWGQGTAVTVSSA
Template Known Secondary structure  TTTT
S

GGG

SSTTS
S
S






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   203......210.........220.........230.........240.........250....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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