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Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank176Aligned Residues167
% Identity14%Templatec2jb6L_
PDB info PDB header:immune systemChain: L: PDB Molecule:fab fragment mor03268 light chain; PDBTitle: fab fragment in complex with small molecule hapten, crystal2 form-2
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60. ..
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HV
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Template Sequence  SVSGSPGQSITISCTGTSSDVGSNNYVS. . WYQQHPGKAPKLMIYGGSNRPSGVSNRFSG
Template Known Secondary structure 
TTS


TTTGGG
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BTTTB

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   910.........20.........30...... ...40.........50.........60......
 
   64.....70.........80.........90......... 100.........110.........120..
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. SGYLDIQFWTPVSHPVLTLQHEA
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Template Sequence  SKSGNTASLTISGLQAEDEADYYCRSWDSNLSYSVFGGGTKLTVLGQPKAAPSVTLFPPS
Template Known Secondary structure  TT
S

GGG

TTSS



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B




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   67..70.........80.........90.........100.........110.........120......
 
   123......130.........140.... .....150.........160... ......170.
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Query Sequence  TNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . . . . . RAASLLAS
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Template Sequence  SEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLT
Template Known Secondary structure  TT

BSS

TT
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   127..130.........140.........150.........160.........170.........180......
 
   172.......180.........190.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISE
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Template Sequence  PEQWKSHRSYSCQVTHEGSTVEKT
Template Known Secondary structure  TSS

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   187..190.........200.........210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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