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Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank156Aligned Residues176
% Identity16%Templatec4elkB_
PDB info PDB header:immune systemChain: B: PDB Molecule:hy19.3 tcr beta chain (mouse variable domain, human PDBTitle: crystal structure of the hy19.3 type ii nkt tcr
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23...... 30.........40.........50.........
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Query Sequence  PELTEFT. . . . NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . .
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Template Sequence  PKVLQIPSHQIIDMGQMVTLNCDPVSNHLY. . . . . . FYWYKQILGQQMEFLVNFYNGKVM
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   3......10.........20.........30.. .......40.........50......
 
   60.........70.........80.........90........ .100.....
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Query Sequence  . . . . . . . . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQK. . . . . KSGYLDI
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Template Sequence  EKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLE
Template Known Secondary structure 
TT

TTS

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S

GGG
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   57..60.........70.........80.........90.........100.........110......
 
   106...110.........120.........130.........140.... .....150.........160....
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Query Sequence  QFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR
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Template Sequence  DLRNVTPPKVSLFEPSKAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQ
Template Known Secondary structure 
GGG
B




SBS

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   117..120.........130.........140.........150.........160.........170......
 
   165....170......... 180.........190.. .......200.
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Query Sequence  . . . . . . . . . . . . . . . AASLLASVKAEWSTK. NYSCEAKNNISRE. . . . . . . ISELKKFPL
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Template Sequence  PLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIV
Template Known Secondary structure 
SSTT
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TT


B
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BS
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   177..180.........190.........200.........210.........220.........230......
 
   202..
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Query Sequence  VVS
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Template Sequence  SAE
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   237..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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