Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank272Aligned Residues173
% Identity17%Templatec2zg2A_
PDB info PDB header:immune system/carbohydrate binding proteChain: A: PDB Molecule:sialic acid-binding ig-like lectin 5; PDBTitle: crystal structure of two n-terminal domains of native2 siglec-5
Resolution2.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40......... 50.........60.......
Predicted Secondary structure 










..


..................
Query SS confidence 





















. .

















. . . . . . . . . . . . . . . . . .
Query Sequence  FTNSETMDVILKCTIKVDPKNP. . TLQLFYTFYKNNHVIQDR. . . . . . . . . . . . . . . . . .
Query Conservation      

  


 
     
   ..                  ..................
Alig confidence 





















..

















..................
Template Conservation 


  
  
 
 
                
 
 
                          
Template Sequence  VTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQG
Template Known Secondary structure  TTS


B






SS



TT

GGG

BSS
SSS
B
TTTTT
Template Predicted Secondary structure 





























Template SS confidence 



























































   34.....40.........50.........60.........70.........80.........90...
 
   68.70.........80.........90.........100.........110.......
Predicted Secondary structure  ..........






















Query SS confidence  . . . . . . . . . .

















































Query Sequence  . . . . . . . . . . SPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
Query Conservation  ..........    
 
  
   
 
 
 
 
 
                          
Alig confidence  ..........

















































Template Conservation 
            

 
  
   
 
 
 
                              
Template Sequence  RFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDI
Template Known Secondary structure  T
S
TTTTB


S

GGG
TTT

SS






Template Predicted Secondary structure 


























Template SS confidence 



























































   94.....100.........110.........120.........130.........140.........150...
 
   118.120.........130......... 140.........150.........160.........170......
Predicted Secondary structure 








.














Query SS confidence 





















.




































Query Sequence  LQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEW
Query Conservation         
  
    
 
    .        
 
 
               
 
  
   
Alig confidence 




..














.




































Template Conservation       ..          
                                 
 
      
Template Sequence  HFLEP. . LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPED
Template Known Secondary structure 

S
..
BTTS

SS

SSSS

STTTTTS
TTTTSSS


TTT
Template Predicted Secondary structure 



..
















Template SS confidence 



























































   154.... .160.........170.........180.........190.........200.........210.
 
   177..180.........190.........200...
Predicted Secondary structure 





Query SS confidence 


























Query Sequence  STKNYSCEAKNNISREISELKKFPLVV
Query Conservation 
 
 
 
 
 
  
   
    
 
  
Alig confidence 
















.








Template Conservation 
 
 


 
 
  
   . 

 
 

 
Template Sequence  HGTNLTCQMKRQQVTTE. RTVQLNVSL
Template Known Secondary structure  TT






.


B
Template Predicted Secondary structure 



.
Template SS confidence 


























   212.......220........ .230.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D