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Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank308Aligned Residues169
% Identity15%Templatec1hklH_
PDB info PDB header:catalytic antibodyChain: H: PDB Molecule:48g7 fab; PDBTitle: free and liganded form of an esterolytic catalytic antibody
Resolution2.68 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AELVKPGASVKLSCTASGFNIKDTY. . . MHWVKQRPKQGLEWIGRIDPANVDTKYDPKFQ
Template Known Secondary structure 

TT

SSS
TTTS
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TT


TTTT
TTTT
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   910.........20.........30... ......40.........50.........60.....
 
   60.........70.........80.........90.........100.........110......
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Query Sequence  . . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVL
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Template Sequence  DKATITADTSSKTTYLQLSSLTSEDTAVYYCASYYGIYWGQGTTLTVSSASTKG. . . PSV
Template Known Secondary structure  TTGGGT
S

GGG

GGG

B



S


B
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   65....70.........80.........90.........100.........110........ .120.
 
   117..120.........130.........140.........150.........160... .....
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Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . RAASL
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Template Sequence  FPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSV
Template Known Secondary structure 


TT

SSSBSS

GGGT

TT



TTS
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   122.......130.........140.........150.........160.........170.........180.
 
   169170.........180.........190.........200..
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Query Sequence  LASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Conservation 
 
       
 
 
 
 
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Template Sequence  VTVPSSSLGTQTYICNVNHKPSNTKVD. KKVEPK
Template Known Secondary structure  GGGTTTS
GGGT.


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   182.......190.........200........ .210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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