Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank230Aligned Residues180
% Identity11%Templatec2gjjB_
PDB info PDB header:immune systemChain: B: PDB Molecule:a21 single-chain antibody fragment against erbb2; PDBTitle: crystal structure of a single chain antibody sca21 against her2/erbb2
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40........ .50.........60.
Predicted Secondary structure 











.
...................
Query SS confidence 


























.












. . . . . . . . . . . . . . . . . . .
Query Sequence  NPELTEFTNSETMDVILKCTIKVDPKN. PTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
Query Conservation   
 
      

  


 
     
  .             ...................
Alig confidence 






...
















.












...................
Template Conservation 
  
 
 ... 
  
 
 
               
 
 
                     
Template Sequence  PSSLPVS. . . VGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGV
Template Known Secondary structure 
S
...TT

SS

B
TTT

B

TTS

TTT
TT
Template Predicted Secondary structure 

...



























Template SS confidence 



























































   8.10.... .....20.........30.........40.........50.........60....
 
   62.......70.........80.........90.........100.........110.......
Predicted Secondary structure  ....

























Query SS confidence  . . . .























































Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
Query Conservation  ....          
 
  
   
 
 
 
 
 
                          
Alig confidence  ....























































Template Conservation    
          

 
  
   
 
 
 
 
 
                          
Template Sequence  PDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKEVQLQQSGPEV
Template Known Secondary structure 
TTTTSS

GGG
S
SSSS









Template Predicted Secondary structure 





















Template SS confidence 



























































   65....70.........80.........90.........100.........110.........120....
 
   118.120.... .....130.........140.........150.........160...
Predicted Secondary structure 



.........
















.....
Query SS confidence 






. . . . . . . . .






































. . . . .
Query Sequence  LQHEATN. . . . . . . . . LAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . .
Query Conservation         .........
  
    
 
            
 
 
           .....
Alig confidence 






.........






































.....
Template Conservation                                                              
Template Sequence  VKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFT
Template Known Secondary structure 
TT

SS
GGGS
TTS

TTT


GGGTTT
Template Predicted Secondary structure 




























Template SS confidence 



























































   146...150.........160.........170.........180.........190.........200.....
 
   164.....170.........180.........190...... ...200....
Predicted Secondary structure  .....








..
Query SS confidence  . . . . .
































. .







Query Sequence  . . . . . RAASLLASVKAEWSTKNYSCEAKNNISREISEL. . KKFPLVVS
Query Conservation  .....    
 
  
   
 
 
 
 
 
  
   
  ..  
 
   
Alig confidence  .....
































..







Template Conservation           
 
  
   
 
 
 
  

             
   
 
Template Sequence  VDTSSSTAFMQLNSLTSEDSADYYCVRSGNYEEYAMDYWGQGTSVTVS
Template Known Secondary structure  GGGT
S

GGG

SGGG
S



Template Predicted Secondary structure 
















Template SS confidence 















































   206...210.........220.........230.........240.........250...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D