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Job DescriptionA1YIY0
Confidence99.64%DateTue Jul 30 13:19:15 BST 2013
Rank405Aligned Residues151
% Identity15%Templatec3c6lE_
PDB info PDB header:sugar binding protein/immune systemChain: E: PDB Molecule:tcr 2w20 alpha chain; PDBTitle: crystal structure of mouse mhc class ii i-ab/3k peptide2 complexed with mouse tcr 2w20
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SPQSLTVW. . . EGETAILNCSYEDSTFD. . . . . YFPWYHQFPGESPALLIAIRPVSNKKE
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S...TTS



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.....B
TTS


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   6...10... ......20.........30 .........40.........50.......
 
   60.........70.........80.........90.........100.........110.....
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Query Sequence  . . . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPV
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Template Sequence  DGRFTIFFNKREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAV
Template Known Secondary structure  TTTTTTTSS

GGG
SSSS
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SS


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   58.60.........70.........80.........90.........100.........110.......
 
   116...120.........130.........140.........150.........160... ......170...
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Query Sequence  LTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . RAASLLASVK
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Template Sequence  YQL. . . . . . KDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAI
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   121.. ......130.........140.........150.........160.........170....
 
   174.....180.....
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Query Sequence  AEWSTKNYSCEA
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Template Sequence  AWSNQTSFTCQD
Template Known Secondary structure  SSS



S
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   175....180......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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