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Job DescriptionA1YIY0
Confidence99.84%DateTue Jul 30 13:19:15 BST 2013
Rank109Aligned Residues179
% Identity12%Templatec1pkqF_
PDB info PDB header:immune systemChain: F: PDB Molecule:(8-18c5) chimeric fab, light chain; PDBTitle: myelin oligodendrocyte glycoprotein-(8-18c5) fab-complex
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40......... 50.........60.
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Query Sequence  EAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNP. TLQLFYTFYKNN. . . . . . . . . . . .
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Template Sequence  DIELTQSPSSLAVS. . . AGEKVTMSCKSSQSLLNSGNQKNYLAWYQQKPGLPPKLLIYGA
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SS
...TT

SS

TTTT

TTS


TT
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   1........10.... .....20.........30.........40.........50.......
 
   62.......70.........80.........90.........100.........110
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Query Sequence  . . . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTP
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Template Sequence  STRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCQNDHSYPLTFGAGTKLEIKRTVA
Template Known Secondary structure  S
B
TT

TTTTSS

GGG

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B
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   52.......60.........70.........80.........90.........100.........110.
 
   111........120.........130......... 140.........150.........160....
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Query Sequence  VSHPVLTLQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSGR. . . . .
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Template Sequence  APSVFIFPPSDE. . QLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSK
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..TTTBSS

TT

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TT
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   112.......120... ......130.........140.........150.........160.........
 
   165....170.........180.........190.........200.
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Query Sequence  . . . . . . AASLLASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  DSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS. . . SPVTKSF
Template Known Secondary structure  T

TT
S

TT
S...S
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   170.........180.........190.........200.. .......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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