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Job DescriptionA1YIY0
Confidence99.96%DateTue Jul 30 13:19:15 BST 2013
Rank2Aligned Residues176
% Identity20%Templatec2om5A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:contactin 2; PDBTitle: n-terminal fragment of human tax1
Resolution3.07 Å
Model Dimensions (Å)X:51.500 Y:65.229 Z:31.199

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60........ .70..
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRS. . . . . . . . PHSV
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Template Sequence  QPLSVLFPEESTEEQVLLACRARASPPA. . . . . TYRWKMNGTEMKLEPGSRHQLVGGNLV
Template Known Secondary structure 



SS
S
S

S

.....TT



TT
STT
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   12.......20.........30......... 40.........50.........60......
 
   73......80.........90.........100........
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Query Sequence  FSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  IMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCN
Template Known Secondary structure  S


TT






SS





TTS



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   67..70.........80.........90.........100.........110.........120......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                     
              
   
     
Template Sequence  PPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFS
Template Known Secondary structure 


S

SSTT
B


SSS
SSS

SS

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TT
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   127..130.........140.........150.........160.........170.........180......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRIKWRKV
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S







STT


S


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   187..190.........200.........210.........220.........230.........240......
 
   109110.........120.........130...
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEF
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Template Conservation        
        
                                      
  
 
Template Sequence  AEPTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRW
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SSS

GGG
TT







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   257..260.........270.........280.........290.........300.........310......
 
   134.....140.........150.........160.........170.........180.........190...
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Query Sequence  LCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREI
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Template Sequence  GCAAAGKPR. PTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIY
Template Known Secondary structure 

SSS
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SSSB


BTTTTSS

GGG
S
SS
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   317..320..... ....330.........340.........350.........360.........370.....
 
   194.....200...
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Query Sequence  SELKKFPLVV
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Template Conservation    .  
 
 
Template Sequence  AS. AELAVQA
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   376. ..380....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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