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Job DescriptionA1YIY0
Confidence99.90%DateTue Jul 30 13:19:15 BST 2013
Rank43Aligned Residues170
% Identity13%Templatec2o26X_
PDB info PDB header:cytokine/signaling proteinChain: X: PDB Molecule:mast/stem cell growth factor receptor; PDBTitle: structure of a class iii rtk signaling assembly
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30. ........40.........50.........60.. .......70.....
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Query Sequence  NPELTEFTNS. . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . VIQDRSPHSVFSA
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Template Sequence  PPSIHPAQSELIVEAGDTLSLTCIDPD. . . . . . . . . FVRWTFKTYFNEMVENKKNEWIQE
Template Known Secondary structure 

SS
SSTTS

TT.........
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   36...40.........50.........60.. .......70.........80......
 
   76...80.........90.........100........
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Query Sequence  EAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQ
Template Known Secondary structure  T

GGG
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B




TTS



BS

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   87..90.........100.........110.........120.........130.........140......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR
Template Known Secondary structure  TTS



TT
TTTS

GGGTT
TT


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   147..150.........160.........170.........180.........190.........200......
 
   109110.........120.........130.........140.........150.........160.......
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Query Sequence  . TPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAAS
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Template Sequence  EAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWH
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S


S
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   207..210.........220.........230.........240.........250.........260......
 
   168.170.........180.........190.........200.
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Query Sequence  . . . . . . . . . . . LLASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Conservation             
 
  
   
 
 
 
 
 
  
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Template Sequence  RGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVT. TTLKV
Template Known Secondary structure  TTSS

SSS

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   267..270.........280.........290.........300..... ....310
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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