Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank233Aligned Residues166
% Identity12%Templatec3m8oH_
PDB info PDB header:immune systemChain: H: PDB Molecule:immunoglobulin a1 heavy chain; PDBTitle: human iga1 fab fragment
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........
Predicted Secondary structure 










............................
Query SS confidence 































. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation      

  


 
     
             ............................
Alig confidence 























...




............................
Template Conservation    
  
  
 
 
   
       ...
 
 
                            
Template Sequence  GLVQPGGSLKLSCAASGFTLSGSN. . . VHWVRQASGKGLEWVGRIKRNAESDATAYAASM
Template Known Secondary structure 
TT

SS
GGGS...
TTS


GGGTT

GGG
Template Predicted Secondary structure 










...













Template SS confidence 



























































   10.........20.........30... ......40.........50.........60......
 
   60.........70.........80.........90.........100.........110.....
Predicted Secondary structure  ....

























Query SS confidence  . . . .























































Query Sequence  . . . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPV
Query Conservation  ....            
 
  
   
 
 
 
 
 
                        
Alig confidence  ....






































.















Template Conservation    
             
 
  
   
 
 
 
 
         .                
Template Sequence  RGRLTISRDDSKNTAFLQMNSLKSDDTAMYYCVIRGDVYNRQW. GQGTLVTVSSASPTSP
Template Known Secondary structure  TTSGGGT
S

GGG
S
TT


B.B


S


B

Template Predicted Secondary structure 



















.






Template SS confidence 



























































   67..70.........80.........90.........100......... 110.........120.....
 
   116...120.........130.........140.... .....150.........160.......
Predicted Secondary structure 













..







......
Query SS confidence 




























. .






















. . . . . .
Query Sequence  LTLQHEATNLAVGDKVEFLCEAHQGSLPI. . FYSFYINGEILGKPLAPSGRAAS. . . . . .
Query Conservation           
  
    
 
         ..   
 
 
               ......
Alig confidence 




























..






















......
Template Conservation                                  
 
                         
Template Sequence  KVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT
Template Known Secondary structure 

S


TTBSS
SS

STT




SSSS
Template Predicted Secondary structure 



























Template SS confidence 



























































   126...130.........140.........150.........160.........170.........180.....
 
   168.170.........180.........190.......
Predicted Secondary structure  ...







Query SS confidence  . . .





























Query Sequence  . . . LLASVKAEWSTKNYSCEAKNNISREISELK
Query Conservation  ...
 
  
   
 
 
 
 
 
  
   
   
Alig confidence  ...





























Template Conservation   
 
 
      
 
 


 
          
 
Template Sequence  SSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTV
Template Known Secondary structure  GGGS
TT
TTS

Template Predicted Secondary structure 







Template SS confidence 
































   186...190.........200.........210........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D