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Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank306Aligned Residues172
% Identity15%Templatec3fkuZ_
PDB info PDB header:viral protein/immune systemChain: Z: PDB Molecule:neutralizing antibody f10; PDBTitle: crystal structure of influenza hemagglutinin (h5) in complex with a2 broadly neutralizing antibody f10
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........
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Query Sequence  EAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . .
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Template Sequence  QVQLVQSGAEV. . . . KKPGSSVKVSCTSSEVTFSSFA. . . ISWVRQAPGQGLEWLGGISP
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TT



B


TTGGGS
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T
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   1........10. ........20.........30... ......40.........50...
 
   60.........70.........80.........90.........100....
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Query Sequence  . . . . . . . . . . . . . . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLD
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Template Sequence  MFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDH
Template Known Secondary structure  TT


GGGGGGB

GGGTB
BSS

STT

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   54.....60.........70.........80.........90.........100.........110...
 
   105....110......... 120.........130.........140. ....
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Query Sequence  IQFWTPVSHPVLTLQ. . . . HEATNLAVGDKVEFLCEAHQGS. . . . . . . . . . . . . . . LPIF
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Template Conservation                             
                                
Template Sequence  WGQGTLVTVSSGIQPGLTQPPSVSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKL
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SBB

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TTS


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TTS

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   114.....120.........130.........140.........150.........160.........170...
 
   146...150........ .160.........170.........180.........190...
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Query Sequence  YSFYINGEILGKP. . . . LAPSGRAASLLASVKAEWSTKNYSCEAKNNISREI
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Template Conservation                
           
 
      
 
 
 
 
 
      
Template Sequence  LSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCSTWDSSLSAV
Template Known Secondary structure 


TTS


TT

TTTT
S

GGG
STTTT
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   187..190.........200.........210.........220.........230........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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