Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank251Aligned Residues163
% Identity14%Templatec2po6G_
PDB info PDB header:lipid binding protein/immune systemChain: G: PDB Molecule:nkt15 alpha-chain; PDBTitle: crystal structure of cd1d-lipid-antigen complexed with beta-2-2 microglobulin, nkt15 alpha-chain and nkt15 beta-chain
Resolution3.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.
Predicted Secondary structure 










.........................
Query SS confidence 


































. . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation       

  


 
     
               .........................
Alig confidence 





















.....







.........................
Template Conservation   
 
  
  
 
 
        ..... 
 
 
                           
Template Sequence  SLIILEGKNCTLQCNYTVSPFS. . . . . NLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTA
Template Known Secondary structure  TT



SS

.....
TTS
SS
STT
Template Predicted Secondary structure 








.....













Template SS confidence 



























































   910.........20.........30 .........40.........50.........60...
 
   62.......70.........80.........90.........100.........110.........120.
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHE
Query Conservation            
 
  
   
 
 
 
 
 
                              
Alig confidence 



























































Template Conservation           

 
  
   
 
 
 
                   
 
            
Template Sequence  TLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVY
Template Known Secondary structure  TTTT
S

GGG
SSSSTTS






SS


Template Predicted Secondary structure 

























Template SS confidence 



























































   65....70.........80.........90.........100.........110.........120....
 
   122.......130.........140.........150.........160... ......170.........
Predicted Secondary structure 


















..



Query SS confidence 









































. .















Query Sequence  ATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . RAASLLASVKAEWSTK
Query Conservation     
  
    
 
            
 
 
           ..    
 
  
   
 
Alig confidence  .








































..















Template Conservation  .            
      
   
 
 
                        
  

 
Template Sequence  . QLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKS
Template Known Secondary structure  .


TT


S

TT






TTT




GGGT


T
Template Predicted Secondary structure  .


























Template SS confidence 



























































   127..130.........140.........150.........160.........170.........180.....
 
   180.........190.....
Predicted Secondary structure 




Query SS confidence 















Query Sequence  NYSCEAKNNISREISE
Query Conservation   
 
 
 
  
   
 
Alig confidence 















Template Conservation   
 
            
Template Sequence  DFACANAFNNSIIPED
Template Known Secondary structure  T

STTTTSSS


TT
Template Predicted Secondary structure 








Template SS confidence 















   186...190.........200.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D