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Job DescriptionA1YIY0
Confidence99.86%DateTue Jul 30 13:19:15 BST 2013
Rank86Aligned Residues177
% Identity12%Templatec3qs9E_
PDB info PDB header:cytokine/signaling proteinChain: E: PDB Molecule:fl cytokine receptor; PDBTitle: crystal structure of a human flt3 ligand-receptor ternary complex
Resolution7.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60....... ..70.........80...
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDR. . . SPHSVFSAEAKEENSG
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Template Sequence  AVEVDVSASITLQVLVDAPGNI. . . . . SCLWVFKHSSLNCQPHFGVVSMVILKMTETQAG
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B

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   80.........90.........100. ........110.........120.........130....
 
   84.....90.........100........
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Query Sequence  LYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EYLLFIQSTNYTILFTVSIRTLRRPYFRKMENQDALVCISESVPEPIVEWVLCVVKKEEK
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SSSS
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S
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   140.........150.........160.........170.........180.........190.........
 
   109110.........120.........130.........140..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSL
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Template Sequence  VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH
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SS

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   220.........230.........240.........250.........260.........270.........
 
   143......150.........160... ......170.........180.........190..
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Query Sequence  PIFYSFYINGEILGKPLAPSG. . . . . . . . . . RAASLLASVKAEWSTKNYSCEAKNNISRE
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Template Sequence  GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS
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GGGTTTSS

GGG
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   280.........290.........300.........310.........320.........330.........
 
   193......200........
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Query Sequence  ISELKKFPLVVSGTAW
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Template Conservation                  
Template Sequence  ALVTIVGFINATNSSE
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S

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   340.........350.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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