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Job DescriptionA1YIY0
Confidence99.70%DateTue Jul 30 13:19:15 BST 2013
Rank371Aligned Residues163
% Identity12%Templatec1yntD_
PDB info PDB header:immune systemChain: D: PDB Molecule:4f11e12 fab variable heavy chain region; PDBTitle: structure of the immunodominant epitope displayed by the surface2 antigen 1 (sag1) of toxoplasma gondii complexed to a monoclonal3 antibody
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VRPGVSVKISCKGSGYTFTDYG. . . MHWVKQSHAKSLEWIGIISTYSGDASYNQKFKGKA
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TTT


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GGGBTTB
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   1512.......1520.........1530... ......1540.........1550.........1560........
 
   62.......70.........80.........90.........100.........110.........
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Query Sequence  . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  TMTVDKSSSTAYMELARLTSEDSAIYYCARSSTWYYFDYWGQGTTLTVSSAKTTAPSVYP
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GGGT
S

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B

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   15691570.........1580.........1590.........1600.........1610.........1620........
 
   120.........130.........140.........150.........160... ......170.
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . RAASLLAS
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Template Sequence  LAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV
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SSBSS

GGGTB
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   16291630.........1640.........1650.........1660.........1670.........1680........
 
   172.......180.........190.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISE
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Template Sequence  TSSTWPSQSITCNVAHPASSTKVD
Template Known Secondary structure  TTSTTTS

GGGT
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   16891690.........1700.........1710..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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