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Job DescriptionA1YIY0
Confidence99.85%DateTue Jul 30 13:19:15 BST 2013
Rank102Aligned Residues146
% Identity13%Templatec1hngB_
PDB info PDB header:t lymphocyte adhesion glycoproteinChain: B: PDB Molecule:cd2; PDBTitle: crystal structure at 2.8 angstroms resolution of a soluble2 form of the cell adhesion molecule cd2
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60...... ...70.....
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Query Sequence  ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQD. . . . . . . . . . . . . . . . RSPHSVFSA
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Template Sequence  LGHGINLNIPNFQMTDDID. . . EVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIK
Template Known Secondary structure  TTS


TT



TT...TTSSS

SSTT
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S
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   10.........20........ .30.........40.........50.........60......
 
   76...80.........90.........100.........110.........120.........130.....
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Query Sequence  EAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLC
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Template Sequence  NLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMI. . . . . . . . . YWECSNATLTC
Template Known Secondary structure  S

GGG
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   67..70.........80.........90.........100...... ...110.......
 
   136...140.........150.........160.........170.........180.........190.....
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Query Sequence  EAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  EVLEGTD. VELKLYQGKEHLRS. . . . . . . LRQKTMSYQWTNLRAPFKCKAVNRVSQESEM
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S
SS.
TT.......SSS
S

SS
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   118.120.... .....130........ .140.........150.........160.........
 
   196.
Predicted Secondary structure 
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Query Sequence  LK
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Template Conservation   
Template Sequence  EV
Template Known Secondary structure 
Template Predicted Secondary structure 
Template SS confidence 

   170.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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