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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank127Aligned Residues175
% Identity19%Templatec1qz1A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:neural cell adhesion molecule 1, 140 kda isoform; PDBTitle: crystal structure of the ig 1-2-3 fragment of ncam
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30. ........40.........50.........60.........70.
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Query Sequence  LTEFTNS. . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . . . . . .
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Template Sequence  VDIVPSQGEISVGESKFFLCQVAGDAKDK. . . . DISWFSPNGEKLSPNQQRISVVWNDDD
Template Known Secondary structure  SSSTT

SS

S

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TTS
B

SS
SSTT
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   3......10.........20.........30. ........40.........50........
 
   72.......80.........90.........100........
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Query Sequence  . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . .
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Template Conservation     
                                                        
Template Sequence  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI
Template Known Secondary structure 
S

GGG

TTS


S

SSTTS
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   5960.........70.........80.........90.........100.........110........
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG
Template Known Secondary structure 


SS

TTS
SSTT

TT
TTS
TT

GGG
GGGT
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   119120.........130.........140.........150.........160.........170........
 
   109110.........120.........130.........140.........150........
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Query Sequence  . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKP
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Template Conservation                                                   
      
   
Template Sequence  EINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENE
Template Known Secondary structure  S
STTS


S

TT



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   179180.........190.........200.........210.........220.........230........
 
   159160.........170.........180.........190.........200....
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Query Sequence  . . . . LAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVS
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Template Conservation               
 
  
   
 
 
 
 
 
  
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Template Sequence  DDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS. IHLKVFAK
Template Known Secondary structure 

SS
TTS

S

GGG
TT.

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   241........250.........260.........270.........280. ........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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