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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank123Aligned Residues174
% Identity12%Templatec2kh2B_
PDB info PDB header:cytokine/immune systemChain: B: PDB Molecule:scfv; PDBTitle: solution structure of a scfv-il-1b complex
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60. ..
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HV
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Template Sequence  SLSASVGDRVTITCRTSGNIHNYLT. . . . . WYQQKPGKAPQLLIYNAKTLADGVPSRFSG
Template Known Secondary structure 
TT

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BS
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TTS
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TT
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   10.........20.........30.... .....40.........50.........60....
 
   64.....70.........80.........90.........100.........110....
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHP. . . . . . . . .
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Template Sequence  SGSGTQFTLTISSLQPEDFANYYCQHFWSLPFTFGQGTKVEIKRTGGGGSGGGGSGGGGS
Template Known Secondary structure  BTSS

GGG
S
SSTT

B
S





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TTT
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   65....70.........80.........90.........100.........110.........120....
 
   115....120.........130.........140.........150....
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Query Sequence  . . . . . . VLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEI. . . . . . . . . . . . . .
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Template Sequence  GGGGSEVQLVESGGGLVQPGGSLRLSCAASGFDFSRYDMSWVRQAPGKRLEWVAYISSGG
Template Known Secondary structure  TSSS






TT

SS
TTTS

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   125....130.........140.........150.........160.........170.........180....
 
   155....160.........170.........180.........190.... .....
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Query Sequence  . . . . . . . . . . . . LGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREIS. . . ELKKF
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Template Conservation                          

 
  
   


 
 
 
 
            
 
Template Sequence  GSTYFPDTVKGRFTISRDNAKNTLYLQMNSLRAEDTAVYYCARQNKKLTWFDYWGQGTLV
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TTTTTTTTTT
S

GGG


SSSS

S


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   185....190.........200.........210.........220.........230.........240....
 
   200.....
Predicted Secondary structure 

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Query Sequence  PLVVSG
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Template Conservation   
    
Template Sequence  TVSSHH
Template Known Secondary structure 

S
Template Predicted Secondary structure 


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   245....250
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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