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Job DescriptionA1YIY0
Confidence99.75%DateTue Jul 30 13:19:15 BST 2013
Rank322Aligned Residues167
% Identity10%Templatec3nl4H_
PDB info PDB header:immune systemChain: H: PDB Molecule:antigen binding fragment,immunoglobulin igg - heavy chain; PDBTitle: crystal structure of amyloid prefibrillar oligomer-specific rabbit fab
Resolution1.54 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60. .
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . H
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Template Sequence  VTPGTPLTLACTVSGFSLNTYS. . . MFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFT
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TT

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TT


GGGTTT
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   11........20.........30.. .......40.........50.........60.......
 
   63......70.........80.........90.........100.........110.........120..
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Query Sequence  VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
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Template Sequence  ISKTSTTVDLKITSPTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLA
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GGG

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B


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   68.70.........80.........90.........100.........110.........120.......
 
   123......130.........140.........150.........160 .........170.........
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Query Sequence  TNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLA. . . PSGRAASLLASVKAEWSTK
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Template Sequence  PCCGDTPTVTLGCLVKGYLPEPVTVTWNSGTLTNGVRTFPSVRQSSGLYSLS. SVVSVTS
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TT



BSS

GGGTB
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   128.130.........140.........150.........160.........170......... 180......
 
   180.........190.........200.
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Query Sequence  NYSCEAKNNISREISELKKFPL
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Template Sequence  PVTCNVAHPATNTKVD. KTVAP
Template Known Secondary structure 

GGGT.

S
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   192.......200....... ..210..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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