Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.77%DateTue Jul 30 13:19:15 BST 2013
Rank296Aligned Residues176
% Identity13%Templatec1adqA_
PDB info PDB header:complex (immunoglobulin/autoantigen)Chain: A: PDB Molecule:igg4 rea fc; PDBTitle: crystal structure of a human igm rheumatoid factor fab in2 complex with its autoantigen igg fc
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30. ........40.........50.........60.........70.
Predicted Secondary structure 



......













.....
Query SS confidence 








. . . . . .







































. . . . .
Query Sequence  PELTEFTNS. . . . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . .
Query Conservation 
 
      ......

  


 
     
                         .....
Alig confidence 








......

















.




















.....
Template Conservation 
 
   

        
  
 
 
 
 
     .
   
 
                   
Template Sequence  PSVFLFPPKPKDTLMISRTPEVTCVVVDVSQED. PQVQFNWYVDGVQVHNAKTKPREQQF
Template Known Secondary structure 




TTS




SSB.



B

TT
TTTB






B
Template Predicted Secondary structure 















.







Template SS confidence 



























































   238.240.........250.........260.........270 .........280.........290......
 
   72.......80.........90.........100.........110.........120..
Predicted Secondary structure  .........






















Query SS confidence  . . . . . . . . .


















































Query Sequence  . . . . . . . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
Query Conservation  .........
 
  
   
 
 
 
 
 
                               
Alig confidence  .........






































..









Template Conservation                                                  ..          
Template Sequence  NSTYRVVSVLTVLHQNWLDGKEYKCKVSNKGLPSSIEKTISKAKGQPR. . EPQVYTLPPS
Template Known Secondary structure  TTB





TT



BTSSS




S

B..




Template Predicted Secondary structure 






















..


Template SS confidence 



























































   297..300.........310.........320.........330.........340.... .....350....
 
   123......130.........140.... .....150.........160.. .......170..
Predicted Secondary structure 










.





.........

Query SS confidence 





















.

















. . . . . . . . .









Query Sequence  TNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPS. . . . . . . . . GRAASLLASV
Query Conservation    
  
    
 
         .   
 
 
          .........     
 
  
Alig confidence 





















.

















.........









Template Conservation       
    
 
                                        
 
 
  
Template Sequence  QEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDK
Template Known Secondary structure  TTGGGSSBSS

SSSSB

S



TTS
Template Predicted Secondary structure 





















Template SS confidence 



























































   355....360.........370.........380.........390.........400.........410....
 
   173......180.........190.........200.
Predicted Secondary structure 







Query SS confidence 




























Query Sequence  KAEWSTKNYSCEAKNNISREISELKKFPL
Query Conservation 
   
 
 
 
 
 
  
   
    
 
Alig confidence 




























Template Conservation      
   


 
 
 

       

  
Template Sequence  SRWQEGNVFSCSVMHEALHNHYTQKSLSL
Template Known Secondary structure  TT


TTSTTS


Template Predicted Secondary structure 











Template SS confidence 




























   415....420.........430.........440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D