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Job DescriptionA1YIY0
Confidence99.70%DateTue Jul 30 13:19:15 BST 2013
Rank373Aligned Residues169
% Identity14%Templatec1ae6H_
PDB info PDB header:immunoglobulinChain: H: PDB Molecule:igg ctm01 fab (heavy chain); PDBTitle: igg-fab fragment of mouse monoclonal antibody ctm01
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ELVKPGASVKISCKASGYTFTDYY. . . INWMKQKPGQGLEWIGWIDPGSGNTKYNEKFKG
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   10.........20.........30... ......40.........50.........60......
 
   60.........70.........80.........90...... ...100.........110....
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Query Sequence  . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLI. . . QKKSGYLDIQFWTPVSHP
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Template Sequence  KATLTVDTSSSTAYMQLSSLTSEDTAVYFCAREKTTYYYAMDYWGQGTSVTVSAAKTTPP
Template Known Secondary structure  TTTTTS

GGG
BTTTT
B


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B

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   66...70.........80.........90.........100.........110.........120.....
 
   115....120.........130.........140.... .....150.........160... ....
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Query Sequence  VLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . RAAS
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Template Sequence  SVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSS
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   120.........130.........140.........150.........160.........170.........
 
   168.170.........180.........190.........
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Query Sequence  LLASVKAEWSTKNYSCEAKNNISREISELKKF
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Template Sequence  SVTVPSSPRPSETVTCNVAHPASSTKVDKKIV
Template Known Secondary structure 
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   180.........190.........200.........210.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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