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Job DescriptionA1YIY0
Confidence99.85%DateTue Jul 30 13:19:15 BST 2013
Rank104Aligned Residues139
% Identity17%Templatec1cczA_
PDB info PDB header:glycoproteinChain: A: PDB Molecule:protein (cd58); PDBTitle: crystal structure of the cd2-binding domain of cd58 (lymphocyte2 function-associated antigen 3) at 1.8-a resolution
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.... .....70..
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Query Sequence  ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVI. . . . . . . . . . . . . . . . . . . QDRSPHSV
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Template Sequence  VYGNVTFHVPSNVPLKE. . . . . . VLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL
Template Known Secondary structure  TT





SS

S
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GGGTTS
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   910.........20..... ....30.........40.........50.........60..
 
   73......80.........90.........100.........110.........120.........130..
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Query Sequence  FSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVE
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Template Sequence  TIYNLTSSDEDEYEMESPNITDTMKFF. . . . . . . . . . . . . LYVLEMVSKPMIYWECSNAT
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GGG

TT

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   63......70.........80......... 90.........100.........
 
   133......140.........150.........160.........170.........180.........190..
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Query Sequence  FLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISRE
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Template Sequence  LTCEVLEGTD. VELKLYQGKEHLRS. . . . . . . LRQKTMSYQWTNLRAPFKCKAVNRVSQE
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SS
SS.
TT.......SSS
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TT
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   110......... 120.........130... ......140.........150.........160.
 
   193....
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Query Sequence  ISELK
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Template Sequence  SEMEV
Template Known Secondary structure 
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   162....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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