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Job DescriptionA1YIY0
Confidence99.63%DateTue Jul 30 13:19:15 BST 2013
Rank406Aligned Residues158
% Identity9%Templatec2p5eD_
PDB info PDB header:immune systemChain: D: PDB Molecule:t-cell receptor, alpha chain; PDBTitle: crystal structures of high affinity human t-cell receptors bound to2 pmhc reveal native diagonal binding geometry
Resolution1.89 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.... .....60.
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Query Sequence  NPELTEFTNSETMDVILKCTIKVDPKNPTLQLF. . . . . . . . . . . . . . . . . . . . YTFYKNN
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Template Sequence  PAALSVP. . . EGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLITPWQREQTSGRLNA
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S...TT

S



TTS
BTTB
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   8.10.... .....20.........30.........40.........50.........60....
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHE
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Template Sequence  SLDKSSGSSTLYIAASQPGDSATYLCAVRPLLDGTYIPTFGRGTSLIVHPYIQNPDPAV.
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SSTT
S

GGG
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   65....70.........80.........90.........100.........110.........120...
 
   122.......130.........140.........150......... 160.........170.........
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Query Sequence  ATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPL. . APSGRAASLLASVKAEWSTK
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Template Sequence  YQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKS
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SS
TT
S

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SBTT


GGGT

S
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   124.....130.........140.........150.........160.........170.........180...
 
   180...
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Query Sequence  NYSC
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Template Sequence  DFAC
Template Known Secondary structure  S

G
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   184...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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