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Job DescriptionA1YIY0
Confidence99.89%DateTue Jul 30 13:19:15 BST 2013
Rank50Aligned Residues191
% Identity10%Templatec3chnS_
PDB info PDB header:immune systemChain: S: PDB Molecule:secretory component; PDBTitle: solution structure of human secretory iga1
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20......... 30.........40.........50.........60.
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Query Sequence  QEQFPNPELTEFT. . . . NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . .
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Template Sequence  LFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYW. CLWEGAQNGRCPLLVDSE
Template Known Secondary structure  BS
SSS






S

T

TTTTTS

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SSS



TT
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   326...330.........340.........350.........360...... ...370.........380....
 
   62.......70.........80.........90.........100........
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Query Sequence  . . . . . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW
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Template Sequence  GWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEG. .
Template Known Secondary structure  T
TTTTTTTTTT

STT
SSS
GGG




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   385....390.........400.........410.........420.........430.........440..
 
   109110.........120.........130........ .140.........150.........160
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Query Sequence  TPVSHPVLTLQHEATNLAVGDKVEFLCEAH. . . QGSLPIFYSFYINGEILGKPLA. . . . .
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Template Sequence  . . . . . EPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSK
Template Known Secondary structure  .....SS

B

S




TT



SGGGGS
SSSSSS


SS

SS
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   443......450.........460.........470.........480.........490.......
 
   161........170.........180.........190.........200.........210....
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Query Sequence  . . . . . . PSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSGTAWIKSNML
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Template Conservation               
 
  
   
 
 
 
 
 
  
   
  
 
 
             
Template Sequence  AFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSL
Template Known Secondary structure 
TTS





TTTTS
S
GGG




TTS
S
SS




SS
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   498.500.........510.........520.........530.........540.........550.......
 
   215
Predicted Secondary structure 
Query SS confidence 
Query Sequence  P
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  A
Template Known Secondary structure  S
Template Predicted Secondary structure 
Template SS confidence 
   558
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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