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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank145Aligned Residues178
% Identity16%Templatec1moeA_
PDB info PDB header:immune systemChain: A: PDB Molecule:anti-cea mab t84.66; PDBTitle: the three-dimensional structure of an engineered scfv2 t84.66 dimer or diabody in vl to vh linkage.
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPASLAVS. . . LGQRATMSCRAGESVDIFGVGF. LHWYQQKPGQPPKLLIYRASNLESGI
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   7..10.... .....20.........30...... ...40.........50.........60..
 
   62.......70.........80.........90......... 100.........110......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. SGYLDIQFWTPVSHPVL
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Template Sequence  PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQ
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   63......70.........80.........90.........100.........110.........120..
 
   117..120.........130.........140.........150......
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Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILG. . . . . . . . . . . . . . . . . . . .
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Template Sequence  LQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPK
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   123......130.........140.........150.........160.........170.........180..
 
   157..160.........170.........180.........190...... ...200..
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Query Sequence  . . . . . . KPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISEL. . . . . KKFPLV
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Template Sequence  FQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGYYVSDYAMAYWGQGTSVTVS
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   183......190.........200.........210.........220.........230.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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