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Job DescriptionA1YIY0
Confidence99.72%DateTue Jul 30 13:19:15 BST 2013
Rank358Aligned Residues158
% Identity13%Templatec2vlrD_
PDB info PDB header:immune systemChain: D: PDB Molecule:jm22 tcr alpha chain; PDBTitle: the structural dynamics and energetics of an immunodominant2 t-cell receptor are programmed by its vbeta domain
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FLSIQEGENLTVYCNSSSVFSS. . . . . . LQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTF
Template Known Secondary structure  TT


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S
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STT
TT
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   11........20.........30.. .......40.........50.........60....
 
   62.......70.........80.........90.........100.........110.........120.
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Query Sequence  HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHE
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Template Sequence  QFGDARKDSSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQL.
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GGG

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   65....70.........80.........90.........100.........110.........120...
 
   122.......130.........140.........150........ .160.........170.........
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Query Sequence  ATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKP. . LAPSGRAASLLASVKAEWSTK
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Template Sequence  . . . RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKS
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S

TT





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TTTT

T
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   124.....130.........140.........150.........160.........170.........180
 
   180...... ...190....
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Query Sequence  NYSCEAK. . NNISREIS
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Template Sequence  DFACANAFNNSIIPEDT
Template Known Secondary structure  T

TTTS


TT
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   181........190.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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