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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank282Aligned Residues172
% Identity15%Templatec1ggiM_
PDB info PDB header:immunoglobulinChain: M: PDB Molecule:igg2a 50.1 fab (light chain); PDBTitle: crystal structure of an hiv-1 neutralizing antibody 50.1 in2 complex with its v3 loop peptide antigen
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPGSLAVS. . . LGQRATISCRASESVDDDG. NSFLHWYQQKPGQPPKLLIYRSSNLISGI
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S
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SS

BSSS.SB

TTS

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   7..10.... .....20.........30... ......40.........50.........60..
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PDRFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPLTFGAGTKLEIKRADAAPTVSIF
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TTTT
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TT

S
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   5960.........70.........80.........90.........100.........110........
 
   118.120.........130.........140.... .....150.........160... ..
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . . . . . . RA
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Template Sequence  PPSSE. . QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMS
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..TTSSS

TT
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   119120... ......130.........140.........150.........160.........170......
 
   166...170.........180.........190.........200.
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  STLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSF
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TT
S...S
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   177..180.........190.........200.. .......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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