Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.75%DateTue Jul 30 13:19:15 BST 2013
Rank318Aligned Residues167
% Identity13%Templatec3omzA_
PDB info PDB header:immune systemChain: A: PDB Molecule:human vdelta1 gamma delta t cell receptor delta1a/b-3; PDBTitle: crystal structure of mica-specific human gamma delta t cell receptor
Resolution3.04 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.. .......50.... .....60.........70...
Predicted Secondary structure 


.........




.........





Query SS confidence 










. . . . . . . . .











. . . . . . . . .


















Query Sequence  ETMDVILKCTI. . . . . . . . . KVDPKNPTLQLF. . . . . . . . . YTFYKNNHVIQDRSPHSVF
Query Conservation 

  


 
  .........   
        .........                 
 
Alig confidence 










.........











.........


















Template Conservation   
  
 
 
    
 
 
   
                                    
 
Template Sequence  TGSSAEITCDLGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSKNLRMI
Template Known Secondary structure  TT






TTS

TTT


TT

BTT




Template Predicted Secondary structure 
























Template SS confidence 



























































   16...20.........30.........40.........50.........60.........70.....
 
   74.....80.........90.........100.........110.........120.........130...
Predicted Secondary structure 


























Query SS confidence 



























































Query Sequence  SAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEF
Query Conservation 
  
   
 
 
 
 
 
                                 
  
    
Alig confidence 


































....




















Template Conservation         
   
 
                     ....            
  
  
 
Template Sequence  LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVT. . . . DQKVTQAQSSVSMPVRKAVTL
Template Known Secondary structure  SS

GGG

TTSS



....






TT

Template Predicted Secondary structure 










....










Template SS confidence 



























































   83......90.........100.........110....... ..120.........130........
 
   134.....140.........150..... ....160.........170...
Predicted Secondary structure 









....................





Query SS confidence 





















. . . . . . . . . . . . . . . . . . . .

















Query Sequence  LCEAHQGSLPIFYSFYINGEIL. . . . . . . . . . . . . . . . . . . . GKPLAPSGRAASLLASVK
Query Conservation   
            
 
 
   ....................            
 
  
Alig confidence 





















....................

















Template Conservation   
                                                    
 
  
Template Sequence  NCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISAL
Template Known Secondary structure 




SS

TT

TTS


TT

BGGGTB

SS
Template Predicted Secondary structure 































Template SS confidence 



























































   157..160.........170.........180.........190.........200.........210......
 
   174.....180.........190....... ..200..
Predicted Secondary structure 






....
Query SS confidence 























. . . .




Query Sequence  AEWSTKNYSCEAKNNISREISELK. . . . KFPLV
Query Conservation     
 
 
 
 
 
  
   
   .... 
 
 
Alig confidence 























....




Template Conservation     


 
 
 
 
  
          
   
 
Template Sequence  QLEDSAKYFCALGESLTRADKLIFGKGTRVTVE
Template Known Secondary structure 
GGG
SS
SSTT





Template Predicted Secondary structure 













Template SS confidence 
































   217..220.........230.........240.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D