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Job DescriptionA1YIY0
Confidence99.67%DateTue Jul 30 13:19:15 BST 2013
Rank397Aligned Residues160
% Identity13%Templatec1nj9H_
PDB info PDB header:immune systemChain: H: PDB Molecule:immunoglobulin heavy chain; PDBTitle: cocaine hydrolytic antibody 15a10
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.....
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGASVKVSCKASGYSFTDYN. . . MYWVKQNHGESLEWIAYIDPSNGDTFYNQKFQGKA
Template Known Secondary structure 
TT

SS
SSSS
...TTT
TTTS

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   12.......20.........30... ......40.........50.........60........
 
   66...70.........80.........90.........100.........110.........
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Query Sequence  . . . . . . DRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  TVTLDKSSSTAFMHLNSLTSEDSAVYYCARGGGLFAFWGQGTLVTVSAKTTPPSVYPLAP
Template Known Secondary structure  TTTT
S

GGG

SSS

SB






B



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   68.70.........80.........90.........100.........110.........120.......
 
   120.........130.........140.... .....150.........160... ......170.
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . . RAASLLAS
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Template Sequence  GSA. . AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV.
Template Known Secondary structure 
S
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SSSBSS

GGGTB
TT
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   126.. .130.........140.........150.........160.........170.........180..
 
   172.......180.........190.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISE
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Template Sequence  PSSPRPSETVTCNVAHPASSTKVD
Template Known Secondary structure  TTS

GGGT
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   183......190.........200......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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