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Job DescriptionA1YIY0
Confidence99.70%DateTue Jul 30 13:19:15 BST 2013
Rank378Aligned Residues171
% Identity12%Templatec3bszN_
PDB info PDB header:transport protein/immune systemChain: N: PDB Molecule:fab fragment light chain; PDBTitle: crystal structure of the transthyretin-retinol binding2 protein-fab complex
Resolution3.38 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60..
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Query Sequence  EAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . .
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Template Sequence  DVQLQESGTVL. . . . ARPGASVKMSCKASGYSFTSYW. . . MHWIKQRPGQGLEWIGGVYP
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   1........10. ........20.........30... ......40.........50...
 
   63......70.........80.........90.........100....
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Query Sequence  . . . . . . . . . . . . . . . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLD
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Template Sequence  GDSHTSYNQKFKGKAKLTAVTSASTAYMELSSLTNEDSAVYYCTRSGFDYGNEDWGQGTT
Template Known Secondary structure  TTT
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   54.....60.........70.........80.........90.........100.........110...
 
   105.. ..110.........120.........130.........140.... .....150.........160
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Query Sequence  IQF. WTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLA. .
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Template Sequence  LTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPA
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   114.....120.........130.........140.........150.........160.........170...
 
   161........170.........180.........190...
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Query Sequence  . . . . . PSGRAASLLASVKAEWSTKNYSCEAKNNISREI
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Template Sequence  VLQSDLYTLSSSVTV. PSSPRPSETVTCNVAHPASSTK
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STTS.
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GGGT
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   174.....180........ .190.........200.........210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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