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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank254Aligned Residues162
% Identity10%Templatec1ub6H_
PDB info PDB header:immune systemChain: H: PDB Molecule:antibody 19g2, alpha chain; PDBTitle: crystal structure of antibody 19g2 with sera ligand
Resolution2.12 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.....
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGGSLKLSCTASGITFSRYI. . . MSWVRQIPEKRLEWVASISSGGITYYPDSVAGRFT
Template Known Secondary structure 
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GGGS
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   12.......20.........30... ......40.........50.........60........
 
   66...70.........80.........90.........100.........110.........120
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Query Sequence  . . . . . DRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQH
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Template Sequence  ISRDNVRNILYLQMSSLRSEDTALYYCARGQGRPYWGQ. GTLVTVSAAKTTPPSVYPAAP
Template Known Secondary structure  TTTT
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GGG

SSS

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   71........80.........90.........100........ .110.........120.........
 
   121........130.........140.........150.........160... ......170.......
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Query Sequence  EATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . RAASLLASVKAEWS
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Template Sequence  GCGDTTGSSVTLGCLVKGYFPESVTVTWNSGGSSVHTFPALLQSGLYTMSSSVTVPSSTW
Template Known Secondary structure 
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SSS
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TT

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   130.........140.........150.........160.........170.........180.........
 
   178.180.........190.....
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Query Sequence  TKNYSCEAKNNISREISE
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Template Sequence  PSTVTCSVAHPASGTTVD
Template Known Secondary structure  TS
GGGT
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   192.......200.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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