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Job DescriptionA1YIY0
Confidence99.69%DateTue Jul 30 13:19:15 BST 2013
Rank382Aligned Residues177
% Identity12%Templatec3mj7A_
PDB info PDB header:immune systemChain: A: PDB Molecule:junctional adhesion molecule-like; PDBTitle: crystal structure of the complex of jaml and coxsackie and adenovirus2 receptor, car
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.........40.........50.........60..
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Query Sequence  PELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . . . . . . . . . .
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Template Sequence  PQLRVH. . . VGESVLMGCVVQRTEEKHVD. . RVDWLFSKDKDDASEYVLFYYSNLSVPTG
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...TT



B


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TT



TT
G
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   11..... ...20.........30...... ...40.........50.........60.....
 
   63......70.........80.........90.........
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Query Sequence  . . . . . . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. . . . . . . . . . . . . .
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Template Sequence  RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRD
Template Known Secondary structure  GGTTT
S
TTTTB


S

GGG
TT






S
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   66...70.........80.........90.........100.........110.........120.....
 
   100.........110.........120.........130.........140.........150..
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Query Sequence  . . . . . . . SGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYING
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Template Sequence  LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFR
Template Known Secondary structure  TT



B
SSSS




SS


TTSSS


SSTTT
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   126...130.........140.........150.........160.........170.........180.....
 
   153......160.........170.........180.........190.........200.....
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Query Sequence  EILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  NRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKT. IVLHVVQDE
Template Known Secondary structure  T
SS
GGGTB

SS

GGG
TT.


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   186...190.........200.........210.........220........ .230.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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