Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.89%DateTue Jul 30 13:19:15 BST 2013
Rank52Aligned Residues173
% Identity13%Templatec3bn3B_
PDB info PDB header:cell adhesion, immune systemChain: B: PDB Molecule:intercellular adhesion molecule 5; PDBTitle: crystal structure of icam-5 in complex with al i domain
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22....... 30.........40.........50.........60.........70.......
Predicted Secondary structure 


....


















Query SS confidence 







. . . .















































Query Sequence  NPELTEFT. . . . NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHSVFSAEA
Query Conservation   
 
    ....  

  


 
     
                         
 
  
Alig confidence 







....























...




















Template Conservation 
  
 
 
    
  
 

 
 
         
 
 ...                     
Template Sequence  PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLE. . . TSLRRNGTQRGLRWLARQLVD
Template Known Secondary structure 
S
SSTT

SS
S...
SSTT
Template Predicted Secondary structure 













...








Template SS confidence 



























































   2.......10.........20.........30....... ..40.........50........
 
   78.80.........90.........100.........110.........120.........130.......
Predicted Secondary structure 























Query SS confidence 



























































Query Sequence  KEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEA
Query Conservation     
 
 
 
 
 
                                 
  
    
 
  
Alig confidence 






























.....























Template Conservation     
 
 
 
 
 
                 .....              
    
 
  
Template Sequence  IREPETQPVCFFRCARRTLQARGLIRTFQRP. . . . . DRVELMPLPPWQPVGENFTLSCRV
Template Known Secondary structure 
SS

TT
B

.....






SSTTS
Template Predicted Secondary structure 












.....

















Template SS confidence 



























































   5960.........70.........80......... 90.........100.........110...
 
   138.140... ......150...... ...160.........170.........180.........
Predicted Secondary structure 





..




......








Query SS confidence 





. .












. . . . . .
































Query Sequence  HQGSLP. . IFYSFYINGEILG. . . . . . KPLAPSGRAASLLASVKAEWSTKNYSCEAKNNI
Query Conservation        ..    
 
 
    ......           
 
  
   
 
 
 
 
 
  
Alig confidence 





..












......
































Template Conservation      
       
                         
 
      
 
 
 
 
   
Template Sequence  PGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDL
Template Known Secondary structure  TT
B
GGGTT
TTS
TT




GGGTT

Template Predicted Secondary structure 





































Template SS confidence 



























































   114.....120.........130.........140.........150.........160.........170...
 
   190.. .......200..
Predicted Secondary structure 


.......
Query SS confidence 


. . . . . . .









Query Sequence  SRE. . . . . . . ISELKKFPLV
Query Conservation 
  ....... 
    
 
 
Alig confidence 


.......









Template Conservation 
          
 
  
   
Template Sequence  RPHGLGLFENSSAPRELRTF
Template Known Secondary structure  GGGTS





Template Predicted Secondary structure 







Template SS confidence 



















   174.....180.........190...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D