Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.67%DateTue Jul 30 13:19:15 BST 2013
Rank394Aligned Residues160
% Identity10%Templatec3rpiA_
PDB info PDB header:immune systemChain: A: PDB Molecule:heavy chain from highly potent anti-hiv neutralizing PDBTitle: crystal structure of fab from 3bnc60, highly potent anti-hiv antibody
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40..... ....50.... ....
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Query Sequence  NSETMDVILKCTIKVD. . PKNPTLQLF. . . . . . . . . . . . . . . . . . . . . . . . . . . . . YTFY
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Template Sequence  TKPGASVRVSCEASGYKISDHFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLT
Template Known Secondary structure 
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TTT

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TT
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   12.......20.........30.........40.........50.........60.........70.
 
   5960.........70.........80.........90.........100.........110........
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Query Sequence  KNNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTL
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Template Conservation               
 
  
   
 
 
 
 
              
              
Template Sequence  RQASWDFDTYSFYMDLKAVRSDDTAIYFCARQRSDFWDFDVWGSGTQVTVSSASTKGPSV
Template Known Secondary structure 
TTSS
S

GGG

STT





S


B

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   72.......80.........90.........100.........110.........120.........130.
 
   119120.........130.........140.........150.........160... ......170
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Query Sequence  QHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . RAASLLA
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Template Sequence  . . . . . . FPLAPTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSXLYSLSSVVT
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BSS

GGGTB
TT




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   128.130.........140.........150.........160.........170.........180.
 
   171........180.........190.....
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Query Sequence  SVKAEWSTKNYSCEAKNNISREISE
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Template Conservation 
     
 




 
 
        
Template Sequence  VPSSSLGTQTYICNVNHKPSNTKVD
Template Known Secondary structure 
SSSTTT


BGGGTB

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   190.........200.........210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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