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Job DescriptionA1YIY0
Confidence99.92%DateTue Jul 30 13:19:15 BST 2013
Rank24Aligned Residues176
% Identity19%Templatec3dmkB_
PDB info PDB header:cell adhesionChain: B: PDB Molecule:down syndrome cell adhesion molecule (dscam) isoform PDBTitle: crystal structure of down syndrome cell adhesion molecule (dscam)2 isoform 1.30.30, n-terminal eight ig domains
Resolution4.19 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30. ........40.........50.........60........
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Query Sequence  AQEQFPNPELTEFTNS. . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRS. . .
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Template Sequence  LGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTP. . . . . EISWELDGKKIANNDRYQ
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   388.390.........400.........410.........420.... .....430.........440..
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKA
Template Known Secondary structure 
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   443......450.........460.........470.........480.........490.........500..
 
   6970........ .80.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PHSVFSAEAK. EENSGLYQC
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Template Sequence  IVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTC
Template Known Secondary structure  TT




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   503......510.........520.........530.........540.........550.........560..
 
   88.90.........100.........110.........120.........130.........140.......
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Query Sequence  MVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYS
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Template Sequence  VAKNQEGYSARGSLEVQVMVL. . . . PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID
Template Known Secondary structure  SSS


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B




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   563......570.........580... ......590.........600.........610........
 
   148.150.........160.. .......170.........180.........190.........200.
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Query Sequence  FYINGEILGKPLAPS. . . . . GRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Conservation 
 
 
  
                 
 
      
 
 
 
 
 
  
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Template Sequence  WTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFT. TPLNV
Template Known Secondary structure  TTB


GGGT
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   619620.........630.........640.........650.........660.........670. .....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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