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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank217Aligned Residues172
% Identity15%Templatec2znwB_
PDB info PDB header:immune system/hydrolaseChain: B: PDB Molecule:scfv10; PDBTitle: crystal structure of scfv10 in complex with hen egg lysozyme
Resolution2.71 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24..... 30.........40.........50.........60.
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Query Sequence  ELTEFT. . . . NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . .
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Template Sequence  VLTQSPATLSVTPGNSVSLSCRASQSIGN. . . . . NLHWYQQKSHESPRLLIKYASQSISG
Template Known Secondary structure 

S

TT

SS

TT.....

TTS

BTTTB

TT
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   3......10.........20.........30. ........40.........50.......
 
   62.......70.........80.........90.........100.........110......
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Query Sequence  . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVL
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Template Conservation                 
 
  
   
 
 
 
   
                         
Template Sequence  IPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEITDIQLQESGPS
Template Known Secondary structure  S
TTTTSS

GGG

SSSS









S
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   58.60.........70.........80.........90.........100.........110.......
 
   117..120..... ....130.........140.........150.........160...
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Query Sequence  TLQHEATNL. . . . . . . . . AVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . .
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Template Conservation                                                              
Template Sequence  LVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISIT
Template Known Secondary structure 
TTS
S


TTS

TTS

TTS

GGGTT
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   133......140.........150.........160.........170.........180.........190..
 
   164.....170.........180.........190.........200
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Query Sequence  . . . . . RAASLLASVKAEWSTKNYSCEAKNNISREISELKKFP
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Template Sequence  RDTSKNQYYLDLNSVTTEDTATYYCANWDGDYWGQGTLVTVS
Template Known Secondary structure  TTTT
S

GGG
TTSS
B



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   193......200.........210.........220.........230....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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