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Job DescriptionA1YIY0
Confidence99.80%DateTue Jul 30 13:19:15 BST 2013
Rank210Aligned Residues157
% Identity15%Templatec3hg1E_
PDB info PDB header:immune systemChain: E: PDB Molecule:t-cell receptor, beta chain; PDBTitle: germline-governed recognition of a cancer epitope by an immunodominant2 human t cell receptor
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  TLVQPVGSPLSLECTVEGTSNP. . . . . NLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNL
Template Known Secondary structure  TT


S
SS
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SSS

SSTT


BSSS
S
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   10.........20.........30. ........40.........50.........60....
 
   62.......70.........80.........90.........100... ......110....
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYL. . . . . . DIQFWTPVSHP
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Template Sequence  SASRPQDRQFILSSKKLLLSDSGFYLCAWSETGLGTGELFFGEGSRLTVLEDLKNVFPPE
Template Known Secondary structure  TTSS

GGG

SSSSS



S
S
GGG
B

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   65....70.........80.........90.........100.........110.........120....
 
   115....120.........130.........140... ......150.........160....
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Query Sequence  VLTLQHEATNLAVGDKVEFLCEAHQGSLP. IFYSFYINGEILGKPLAPSGR. . . . . . . . .
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Template Sequence  VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALN
Template Known Secondary structure 

B


TTTTTTT
BSS
SSS
B
TT
SS
S
STTS
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   125....130.........140.........150.........160.........170.........180....
 
   165....170......... 180........
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Query Sequence  . . . . . . AASLLASVKAEWSTK. NYSCEAKNN
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Template Conservation   
     
 
 
      
 
  
 
 
 
 
Template Sequence  DSRYALSSRLRVSATFWQDPRNHFRCQVQFY
Template Known Secondary structure  S

STT


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   185....190.........200.........210.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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