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Job DescriptionA1YIY0
Confidence99.90%DateTue Jul 30 13:19:15 BST 2013
Rank37Aligned Residues176
% Identity11%Templatec1p53A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:intercellular adhesion molecule-1; PDBTitle: the crystal structure of icam-1 d3-d5 fragment
Resolution3.06 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30.........40.........50.........60.....
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Query Sequence  AQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . . . . .
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Template Sequence  VLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVH. . LALGDQRLNPTVTYGNDSF
Template Known Secondary structure  B

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STTSS
BTGGG
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   186...190.........200.........210.........220.... .....230.........240...
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTV
Template Known Secondary structure 

GGG
TT




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   244.....250.........260.........270.........280.........290.........300...
 
   66...70.........80.........90.........100.........110.........120..
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Query Sequence  . . . DRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
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Template Sequence  KCEAGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGN
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GGGTT
TT


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   304.....310.........320.........330.........340.........350.........360...
 
   123......130.........140.........150.........160.........170.........180..
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Query Sequence  TNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYS
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Template Sequence  WTWPENSQQTPMCQAWGNPL. PELKCLKDGTFPL. . . . . . . . . PIGESVTVTRDLEGTYL
Template Known Secondary structure  TT






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TTT
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   380.........390......... 400.........410.. .......420.........
 
   183......190.........200....
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Query Sequence  CEAKNNISREISELKKFPLVVS
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Template Sequence  CRARSTQGEVTRE. VTVNVLSP
Template Known Secondary structure  TT.

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   430.........440.. .......450
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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