Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank180Aligned Residues164
% Identity12%Templatec3gsnA_
PDB info PDB header:immune systemChain: A: PDB Molecule:ra14 tcr alpha chain (trav24, traj49); PDBTitle: crystal structure of the public ra14 tcr in complex with the2 hcmv dominant nlv/hla-a2 epitope
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.... .....60
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLF. . . . . . . . . . . . . . . . . . . . YTFYKN
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Template Sequence  SPQSLHVQ. . . EGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRIS
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S...TT





TT



TTS


STT


TT
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   7..10.... .....20.........30.........40.........50.........60...
 
   61........70.........80.........90.........100.........110.........120
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Query Sequence  NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQH
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Template Sequence  ATLNTKEGYSYLYIKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQL.
Template Known Secondary structure 


BTTTTBSS

GGG
SSS

S



SS



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   64.....70.........80.........90.........100.........110.........120..
 
   121........130.........140.........150.........160... ......170........
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Query Sequence  EATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . RAASLLASVKAEWST
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Template Sequence  . . . . RDSKSSDKSVCLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSAVAWSNK
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SSSSSS

T

TT

SS
SS
SS


B




SS



B
S
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   123......130.........140.........150.........160.........170........
 
   179180..... ....190..
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Query Sequence  KNYSCEA. . KNNISRE
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Template Sequence  SDFACANAFNNSIIPE
Template Known Secondary structure  S
S
SSSS

SS


S
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   179180.........190....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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