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Job DescriptionA1YIY0
Confidence99.84%DateTue Jul 30 13:19:15 BST 2013
Rank113Aligned Residues179
% Identity20%Templatec1qokA_
PDB info PDB header:immunoglobulinChain: A: PDB Molecule:mfe-23 recombinant antibody fragment; PDBTitle: mfe-23 an anti-carcinoembryonic antigen single-chain fv2 antibody
Resolution2.4 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60.
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Query Sequence  AEAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . .
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Template Sequence  VKLQQ. . SGAEL. . . . VRSGTSVKLSCTASGFNIKDSY. . . MHWLRQGPEQGLEWIGWID
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   28.30.. ..... ..40.........50......... 60.........70........
 
   62.......70.........80.........90.........100...
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Query Sequence  . . . . . . . . . . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYL
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Template Sequence  PENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYF. DYWG
Template Known Secondary structure  TTTT
GGGBTTTTTT
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   7980.........90.........100.........110.........120.........130... ....
 
   104.....110.........120.........130....... ..140.........150.
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Query Sequence  DIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEA. . . . . . . . . . . . HQGSLPIFYSFYIN
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Template Sequence  QGTTVTVSSENVLTQSPAIMSASPGEKVTITCSASSSVSYMHWFQQKPGTSPKLWIYSTS
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TT

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   138.140.........150.........160.........170.........180.........190.......
 
   152..... ..160.........170.........180.........190.........200..
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Query Sequence  GEILGK. . . . PLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  NLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK
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TTTTSS

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   213......220.........230.........240.........250.........260.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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