Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank149Aligned Residues175
% Identity13%Templatec1igfM_
PDB info PDB header:immunoglobulinChain: M: PDB Molecule:igg1-kappa b13i2 fab (light chain); PDBTitle: crystal structures of an antibody to a peptide and its complex with2 peptide antigen at 2.8 angstroms
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60. ..
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . HV
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Template Sequence  SLPVSLGDQASISCRSNQTILLSDGDTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSG
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TT


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TTS

TTT
TT

TT
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   10.........20.........30.........40.........50.........60.........
 
   64.....70.........80.........90.........100.........110.........120...
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEAT
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Template Sequence  SGSGTDFTLKISRVEAEDLGVYYCFQGSHVPPTFG. GGTKLEIKRADAAPTVSIFPPSSE
Template Known Secondary structure  TTSS

GGG

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B




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   65....70.........80.........90......... 100.........110.........120...
 
   124.....130.........140.........150.........160.... .....170..
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Query Sequence  NLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . . . . AASLLASV
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Template Sequence  QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK
Template Known Secondary structure  TBSS

SSS


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TTT

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   124.....130.........140.........150.........160.........170.........180...
 
   173......180.........190.........200.....
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Query Sequence  KAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  DEYERHNSYTCEATHKTSTSP. . . IVKSFNRNE
Template Known Secondary structure  TT


TT
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   184.....190.........200.... .....210...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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