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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank255Aligned Residues152
% Identity15%Templatec3pl6C_
PDB info PDB header:immune systemChain: C: PDB Molecule:t-cell receptor alpha chain; PDBTitle: structure of autoimmune tcr hy.1b11 in complex with hla-dq1 and mbp2 85-99
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HPSTLSVQ. . . EGDSAVIKCTYSDSASN. . . . . YFPWYKQELGKRPQLIIDIRSNVGEKK
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S...TTS
S
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   7..10.... .....20.........30. ........40.........50........
 
   60.........70.........80.........90.........100.........110.....
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Query Sequence  . . . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPV
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Template Sequence  DQRIAVTLNKTAKHFSLHITETQPEDSAVYFCAASSFGNEKLTFGTGTRLTIIPNIQNPD
Template Known Secondary structure  TTTTTT
S

GGG
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SS

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   5960.........70.........80.........90.........100.........110........
 
   116...120.........130.........140.........150.........160... ......170...
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Query Sequence  LTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . RAASLLASVK
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Template Sequence  PAVYQL. . . RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAV
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TT


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SSTT





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   119120.... .....130.........140.........150.........160.........170.....
 
   174.....180...
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Query Sequence  AEWSTKNYSC
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Template Sequence  AWSNKSDFAC
Template Known Secondary structure 

TT

S
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   176...180.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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