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Job DescriptionA1YIY0
Confidence99.70%DateTue Jul 30 13:19:15 BST 2013
Rank375Aligned Residues162
% Identity13%Templatec3bquD_
PDB info PDB header:immune systemChain: D: PDB Molecule:3h6 fab heavy chain; PDBTitle: crystal structure of the 2f5 fab'-3h6 fab complex
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGASVKMSCKASGYSFTDYF. . . MHWVKQSHGKSLDWIGYINCYTGATNYSQKFKGKA
Template Known Secondary structure 
TT



SS
GGGS
...TT



SSS


TTTTTT
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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100.........110.........
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Query Sequence  . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  TFTVDTSSNTAYMQFNSLTSEDSAVYYCARTSIGYGSSPPFPYWGQGTLVTVSAAKTTPP
Template Known Secondary structure  GGGT
S

GGG


TTTTTS


SB


S


B

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   6970.........80.........90.........100.........110.........120........
 
   120.........130.........140.........150.........160.... .....170.
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGR. . . . . . . . AASLLAS
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Template Sequence  SVYPLAPGSSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV.
Template Known Secondary structure 




BSS

GGGTB
TT


SSS
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   129130.........140.........150.........160.........170.........180.......
 
   172.......180.........190.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISE
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Template Conservation    
  
 
 


 
 
    
   
Template Sequence  PSSPRPSETVTCNVAHPASSTKVD
Template Known Secondary structure  SSSSSSS

GGGT
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   195....200.........210........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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