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Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank339Aligned Residues173
% Identity18%Templatec3tf7I_
PDB info PDB header:immune systemChain: I: PDB Molecule:42f3 mut7 scfv (42f3 alpha chain, linker, 42f3 beta chain); PDBTitle: 42f3 ql9/h2-ld complex
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.......
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDR. . . . . . . . . . . . .
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Template Sequence  PDARVTVS. . . EGASLQLRCKYSYSATP. . . . . YLFWYVQYPRQGPQMLLKYYSGDPVVQ
Template Known Secondary structure  S
S
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SSS
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TTS


SS
S
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   6...10... ......20.........30 .........40.........50.......
 
   68.70.........80.........90.........100.........110....
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Query Sequence  . . . . . . . . . . . . . SPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHP
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Template Sequence  GVNGFEAEFSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTV. . . . SA
Template Known Secondary structure 
GGG
BTTTTB

SS

GGG

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   58.60.........70.........80.........90.........100.........110. ..
 
   115....120.........130...... ...140.........150......
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Query Sequence  VLTLQHEATNLAVGDKVEFLCE. . . . . . . . . . . . AHQGSLPIFYSFYINGEILG. . . . . .
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Template Sequence  AVTQSPRNKVTVTGENVTLSCRQTNSHNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPD
Template Known Secondary structure 

STT

TT

S
TT

SSTT


S

T
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   136...140.........150.........160.........170.........180.........190.....
 
   157..160.........170.........180.........190.... .....200.....
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Query Sequence  . . KPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREIS. ELKKFPLVVSG
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Template Conservation               
 
  
   
 
 
 
 
 
  
    
  
 
 
    
Template Sequence  GYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVLELE
Template Known Secondary structure  T
SSSSB
SS

GGG
TT
S

S
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   196...200.........210.........220.........230.........240.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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