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Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank328Aligned Residues162
% Identity12%Templatec1i9jH_
PDB info PDB header:immune systemChain: H: PDB Molecule:recombinant monoclonal anti-testosterone fab PDBTitle: testosterone complex structure of the recombinant2 monoclonal wild type anti-testosterone fab fragment
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGGSLKLSCAASGFTFSTYA. . . LSWVRQTADKRLEWVASIVSGGNTYYSGSVKGRFT
Template Known Secondary structure 
TT

SS
GGGS
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TT


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TTTBTT
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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100.. .......110........
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGY. . LDIQFWTPVSHPVLTL
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Template Sequence  ISRDIARNILYLQMSSLRSEDTAMYYCAREYYGYVGLAYWGQGTLVTVSAAKTTPPSVYP
Template Known Secondary structure  TTTT
S

GGG
TT



SS

B

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   6970.........80.........90.........100.........110.........120........
 
   119120.........130.........140.........150.........160... ......170
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Query Sequence  QHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . RAASLLA
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Template Sequence  LAPGSAAQTNSMVTLGCLVKGYFP. EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVT
Template Known Secondary structure 

SS


S
SBS.S

GGGTB
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   129130.........140.........150.. .......160.........170.........180.......
 
   171........180.........190.....
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Query Sequence  SVKAEWSTKNYSCEAKNNISREISE
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Template Conservation 
     
 
 
 
 
 
        
Template Sequence  VPSSTWPSETVTCNVAHPASSTKVD
Template Known Secondary structure  TTTTTTS

GGGT
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   188.190.........200.........210..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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