Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.75%DateTue Jul 30 13:19:15 BST 2013
Rank324Aligned Residues168
% Identity17%Templatec1epfC_
PDB info PDB header:cell adhesionChain: C: PDB Molecule:protein (neural cell adhesion molecule); PDBTitle: crystal structure of the two n-terminal immunoglobulin2 domains of the neural cell adhesion molecule (ncam)
Resolution1.85 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30. ........40.........50.........60.........70.
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Query Sequence  LTEFTNS. . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . . . . . .
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Template Sequence  VDIVPSQGEISVGESKFFLCQVAGDAKDKDIS. . . . WFSPNGEKLSPNQQRISVVWNDDD
Template Known Secondary structure  SSSTT


TT

S
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TTBTTTT
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   3......10.........20.........30.... .....40.........50........
 
   72.......80.........90.........100.........110.........120........
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Query Sequence  . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVG
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Template Sequence  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQK. . . . . LMFKNAPTPQEFKEG
Template Known Secondary structure 
S

GGG

TTS


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TT
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   5960.........70.........80.........90........ .100.........110...
 
   129130.........140.........150........ .160.........170.........180.....
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Query Sequence  DKVEFLCEAHQGSLPIFYSFYINGEILGKP. . . LAPSGRAASLLASVKAEWSTKNYSCEA
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Template Sequence  EDAVIVCDVVSSLP. PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG
Template Known Secondary structure  S



SS
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TTGGGG

TT
TTS
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GGG
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   114.....120....... ..130.........140.........150.........160.........170..
 
   186...190.........200...
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Query Sequence  KNNISREISELKKFPLVV
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Template Conservation   
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Template Sequence  RILARGEI. NFKDIQVIV
Template Known Secondary structure  GGGT.
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   173......180 .........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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