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Job DescriptionA1YIY0
Confidence99.77%DateTue Jul 30 13:19:15 BST 2013
Rank298Aligned Residues163
% Identity10%Templatec3iu4H_
PDB info PDB header:immune systemChain: H: PDB Molecule:chp3 fab heavy chain; PDBTitle: anti neugcgm3 ganglioside chimeric antibody chp3
Resolution1.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VAPSQSLSITCTVSGFSLSRYS. . . VHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLS
Template Known Secondary structure 
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GGGS
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TTS


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GGGTT
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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100.........110.........120
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQH
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Template Sequence  ISKDNSKSQVFLKMNSLQTDDTAMYYCARSGVRAQAWFAYWGQGTLVTVSAASTKGPSVF
Template Known Secondary structure  GGGT
S

GGG







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B

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   6970.........80.........90.........100.........110.........120........
 
   121........130.........140.........150.........160... ......170...
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Query Sequence  EATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . RAASLLASVK
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Template Sequence  PLAPSSKGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS
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BSS

GGGTB
TT



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T
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   123......130.........140.........150.........160.........170.........180..
 
   174.....180.........190.....
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Query Sequence  AEWSTKNYSCEAKNNISREISE
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Template Sequence  SSLGTQTYICNVNHKPSNTKVD
Template Known Secondary structure  T


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   187..190.........200........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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