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Job DescriptionA1YIY0
Confidence99.85%DateTue Jul 30 13:19:15 BST 2013
Rank98Aligned Residues172
% Identity21%Templatec2pf6A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:lutheran blood group glycoprotein; PDBTitle: lutheran glycoprotein, n-terminal domains 1 and 2
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60.......
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Query Sequence  NPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDR. . . . . . . . . . . . . .
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Template Sequence  PPLVEVM. . . RGKSVILDCTPTGTHDHYMLE. . . . WFLTDRSGARPRLASAEMQGSELQV
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   7..10... ......20.........30.... .....40.........50.........
 
   68.70.........80.........90.........100.........110..
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Query Sequence  . . . . . . . . . . . . . . . SPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVS
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Template Sequence  TMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAE. ATARLNVFAKPEA
Template Known Secondary structure 

SS

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GGG

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.B



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   60.........70.........80.........90.........100..... ....110........
 
   113......120.........130.........140.........150.........160....
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Query Sequence  HPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGR. . . . . . . .
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Template Sequence  TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTV
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SS

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SBS

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   119120.........130.........140.........150.........160.........170........
 
   165....170.........180.........190. ........200.
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Query Sequence  . . . . . . . . . AASLLASVKAEWSTKNYSCEAKNNISR. . . . . EISELKKFPL
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Template Conservation      
     
 
 
          
 
 
             
    
 
Template Sequence  REASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL
Template Known Secondary structure 
TTS


GGGGS

GGG






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   179180.........190.........200.........210.........220.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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