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Job DescriptionA1YIY0
Confidence99.70%DateTue Jul 30 13:19:15 BST 2013
Rank368Aligned Residues176
% Identity11%Templatec3n9gH_
PDB info PDB header:immune systemChain: H: PDB Molecule:fab fragment of mab cr4354, heavy chain; PDBTitle: crystal structure of the fab fragment of the human neutralizing anti-2 west nile virus mab cr4354
Resolution1.43 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AEVRKPGASTKVSCKASGYTFTHYY. . . MHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQ
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   910.........20.........30... ......40.........50.........60.....
 
   60.........70.........80.........90.........100 .........110
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Query Sequence  . . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKS. . . . . . GYLDIQFWTP
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Template Sequence  GRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS
Template Known Secondary structure  TTTTTT
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GGG



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   66...70.........80.........90.........100.........110.........120.....
 
   111........120.........130.........140.........150.........160..
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Query Sequence  VSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPS. . . . . . . .
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Template Sequence  TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGL
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   126...130.........140.........150.........160.........170.........180.....
 
   163......170.........180.........190.........200.........
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Query Sequence  . GRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSGTAWI
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Template Sequence  YSLSSVVTV. PSSSLGTQTYICNVNHKPSN. . . TKVDKRVEPKSCDKT
Template Known Secondary structure  .STTBTTB

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   186...190.... .....200.........210.... .....220.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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