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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank252Aligned Residues171
% Identity12%Templatec1u8iB_
PDB info PDB header:immune systemChain: B: PDB Molecule:antibody 2f5 (heavy chain); PDBTitle: crystal structure of the hiv-1 cross neutralizing monoclonal2 antibody 2f5 in complex with gp41 peptide eldkwan
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPTQTLTLTCSFSGFSLSDFGV. GVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLT
Template Known Secondary structure 
TT

SS
TTSTT
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TT


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   12.......20.........30.... .....40.........50.........60.........70
 
   62.......70.........80.........90.........100.........110.........120
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQH
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Template Sequence  ITKDTSKNQVVLVMTRVSPVDTATYFCAHRRGPTTLFGVPIARGPVNAMDVWGQGITVTI
Template Known Secondary structure  GGGT
S

GGG



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GGGSS




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   6970.........80.........90.........100.........110.........120........
 
   121. .......130.........140.........150.........160. .....
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Query Sequence  EA. . . . . . . . TNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAP. . . . . . SGRAA
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Template Sequence  SSTSTKGPSVFPLAPGAAAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYS
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B





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GGGTB
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   112.......120.........130.........140.........150.........160.........170.
 
   167..170.........180.........190.........200..
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Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  LSSVVTVPSSSLQTYTCNVNHKPSNTKVD. KRVEPK
Template Known Secondary structure  TTT


GGGT.


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   178.180.........190.........200...... ...210..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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