Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.63%DateTue Jul 30 13:19:15 BST 2013
Rank409Aligned Residues164
% Identity12%Templatec4dgiH_
PDB info PDB header:protein bindingChain: H: PDB Molecule:pom1 fab heavy chain; PDBTitle: structure of pom1 fab fragment complexed with human prpc fragment 120-2 230
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50....... ..60..
Predicted Secondary structure 









...........................
Query SS confidence 



























. . . . . . . . . . . . . . . . . . . . . . . . . . .




Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTF. . . . . . . . . . . . . . . . . . . . . . . . . . . YKNNH
Query Conservation    

  


 
     
           ...........................     
Alig confidence 



























...........................




Template Conservation 
  
  
 
 
           
 
                              
    
Template Sequence  VMPGASVKMSCKASGYTFTDYWMHWVKQRPGQGLEWIGSIDPSDSYTSHNEKFKGKATLT
Template Known Secondary structure 
TT

SS
GGGS

TTS
TTTT
GGGBTT
Template Predicted Secondary structure 



























Template SS confidence 



























































   12.......20.........30.........40.........50.........60.........70.
 
   63......70.........80.........90.........100.........110.........120..
Predicted Secondary structure 




























Query SS confidence 



























































Query Sequence  VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
Query Conservation           
 
  
   
 
 
 
 
 
                               
Alig confidence 



























































Template Conservation           
 
  
   
 
 
 
 
                                 
Template Sequence  VDESSSTAYMQLSSLTSEDSAVYFCSRSGYGYYAMEYWGQGTSVTVSSAKTTPPSVYPLA
Template Known Secondary structure  GGGT
S

GGG

SS

S







B


Template Predicted Secondary structure 
























Template SS confidence 



























































   72.......80.........90.........100.........110.........120.........130.
 
   123......130.........140.........150.........160... ......170....
Predicted Secondary structure 

















........


Query SS confidence 








































. . . . . . . .










Query Sequence  TNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . RAASLLASVKA
Query Conservation    
  
    
 
            
 
 
           ........    
 
  
 
Alig confidence 








































........










Template Conservation                                                      
 
 
   
Template Sequence  PGGGATNSMVTLGCLVKGYFPEPVTVTWNSGSLSGGVHTFPAVLQSDLYTLSSSVTVPSS
Template Known Secondary structure 

S


SSBSS

TTTTB
SS


TTTT
Template Predicted Secondary structure 





























Template SS confidence 



























































   132.......140.........150.........160.........170.........180.........190.
 
   175....180.........190...
Predicted Secondary structure 





Query SS confidence 


















Query Sequence  EWSTKNYSCEAKNNISREI
Query Conservation    
 
 
 
 
 
  
   
Alig confidence 


















Template Conservation    
 
 


 
 
      
Template Sequence  TWPSETVTCNVAHPASSTK
Template Known Secondary structure  STTTS

GGGT
Template Predicted Secondary structure 









Template SS confidence 


















   192.......200.........210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D