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Job DescriptionA1YIY0
Confidence99.81%DateTue Jul 30 13:19:15 BST 2013
Rank190Aligned Residues152
% Identity14%Templatec2ch8A_
PDB info PDB header:viral proteinChain: A: PDB Molecule:33 kda early protein; PDBTitle: structure of the epstein-barr virus oncogene barf1
Resolution2.3 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40. ........50.........60..
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Query Sequence  FTNSETMDVILKCT. . . IKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VTAFLGERVTLTSYWRRVSLGPEI. . . . . EVSWFKLGPGEEQVLIGRMHHDVIFIEWPFR
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   21........30.........40.... .....50.........60.........70.....
 
   63......70.........80.........90.........100.........110........
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Query Sequence  . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTL
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Template Sequence  GFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ
Template Known Secondary structure  TTTTSS

GGG
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   76...80.........90.........100.........110.........120.........130.....
 
   119120.........130.........140.........150.........160.........170........
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Query Sequence  QHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWST
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Template Sequence  . . . . . . FPDFSVLTVTCTVNAFPH. PHVQWLMPGGVMKEK. . . DGSLSVAVDLSLPKPWH
Template Known Secondary structure  ......SS
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T...TS

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   136...140.........150... ......160........ .170.........180.....
 
   179180.........190....
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Query Sequence  KNYSCEAKNNISREIS
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Template Sequence  LPVTCVGKNDKEEAHG
Template Known Secondary structure 
STT
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   197..200.........210..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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