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Job DescriptionA1YIY0
Confidence99.88%DateTue Jul 30 13:19:15 BST 2013
Rank64Aligned Residues173
% Identity14%Templatec1vcaA_
PDB info PDB header:cell adhesion proteinChain: A: PDB Molecule:human vascular cell adhesion molecule-1; PDBTitle: crystal structure of an integrin-binding fragment of2 vascular cell adhesion molecule-1 at 1.8 angstroms3 resolution
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60..... ....70.
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Query Sequence  EQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . DRSPHS
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Template Sequence  ETTPESRYLAQ. . . IGDSVSLTCSTTGCESP. . . . . FFSWRTQIDSPLNGKVTNEGTTST
Template Known Secondary structure  SSS...TTS
S
SS
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SSTT
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   4.....10.... .....20.........30. ........40.........50.....
 
   72.......80.........90.........100.........110.........120.........130.
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Query Sequence  VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKV
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Template Sequence  LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGP. . . . . . LEAGKPI
Template Known Secondary structure  SS

GGG
STTB

S

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   56...60.........70.........80.........90.........100.. .......
 
   132.......140.... .....150.........160. ........170.........180.
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Query Sequence  EFLCEAHQGSLPI. . FYSFYINGEILGKPLAP. . . . . . . . SGRAASLLASVKAEWSTKNY
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Template Sequence  TVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVL
Template Known Secondary structure  BSGGGTT

S

SS





GGGTT
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   110.........120.........130.........140.........150.........160.........
 
   182.......190.. .......200....
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Query Sequence  SCEAKNNISRE. . . . . . ISELKKFPLVVS
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Template Sequence  VCRAKLHIDEMDSVPTVRQAVKELQVYIS
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   170.........180.........190........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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