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Job DescriptionA1YIY0
Confidence99.75%DateTue Jul 30 13:19:15 BST 2013
Rank313Aligned Residues170
% Identity14%Templatec3mbeC_
PDB info PDB header:immune systemChain: C: PDB Molecule:tcr 21.3 alpha chain; PDBTitle: tcr 21.30 in complex with mhc class ii i-ag7hel(11-27)
Resolution2.89 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.... ..
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Query Sequence  AEAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLF. . . . . . . . . . . . . . . . . YT
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Template Sequence  MPVEQ. . NPPALSLY. . . EGADSGLRCNFSTTMKSVQWFQQNHRGRLITLFYLAQGTKEN
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S...TT

SS

S

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B


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   2.... ...10.... .....20.........30.........40.........50......
 
   57..60.........70.........80.........90.........100 .........110...
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Query Sequence  FYKNNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKS. . . GYLDIQFWTPVSH
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Template Sequence  GRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPE
Template Known Secondary structure  TTTTTT
S

STT
B
SSSTT







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   70.........80.........90.........100.........110.........120.........
 
   114.....120.........130.........140.........150.........160. ........170.
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Query Sequence  PVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAP. . SGRAASLLAS
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Template Sequence  PAVYQL. . . . . KDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNG
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TT
TT
S

SSS





SSS




B

TTTT

B
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   135....140 .........150.........160.........170.........180.........
 
   172.......180.........190...
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Query Sequence  VKAEWSTKNYSCEAKNNISREI
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Template Sequence  AIAWSNQTSFTCQDIFKETNAT
Template Known Secondary structure  SSTT

SSTTT
SS


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   190.........200.........210.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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