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Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank326Aligned Residues166
% Identity15%Templatec4frwE_
PDB info PDB header:cell adhesionChain: E: PDB Molecule:poliovirus receptor-related protein 4; PDBTitle: crystal structure of human nectin-4 extracellular fragment d1-d2
Resolution3.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.....
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VVTVVLGQDAKLPCFYRGDSGEQVGQVA. . WARVDAGEGAQELALLHSKYGLHVSPAYEG
Template Known Secondary structure  TTS



B


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SSS


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SS
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   3940.........50.........60...... ...70.........80.........90......
 
   66...70.........80.........90.........100.........110......
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Query Sequence  . . . . . . . . . DRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVL
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Template Sequence  RVEQPPPPRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVP. . . . . PLP
Template Known Secondary structure  T


SS

SSB



S

GGG

SSS



B
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   97..100.........110.........120.........130.........140........ .150.
 
   117..120.........130.........140.........150.........160...... ...170.
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Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAA. . . . . SLLAS
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Template Sequence  SLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLV
Template Known Secondary structure 
S


TT
S
BS

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SSS
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   152.......160.........170.........180.........190.........200.........210.
 
   172.......180....... ..190.........
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Query Sequence  VKAEWSTKNYSCEAKN. NISREISELKKF
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Template Sequence  PSRSMNGQPLTCVVSHPGLLQDQRITHIL
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STTTT

TT
SS

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   212.......220.........230.........240
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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