Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.74%DateTue Jul 30 13:19:15 BST 2013
Rank338Aligned Residues163
% Identity12%Templatec2qhrH_
PDB info PDB header:immune system/viral proteinChain: H: PDB Molecule:13f6-1-2 fab fragment heavy chain; PDBTitle: crystal structure of the 13f6-1-2 fab fragment bound to its2 ebola virus glycoprotein peptide epitope.
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........
Predicted Secondary structure 









..............................
Query SS confidence 





























. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    

  


 
     
             ..............................
Alig confidence 





















...




..............................
Template Conservation 
  
  
 
 
   
       ...
 
 
                              
Template Sequence  VKPGGSLKLSCAASGFAFSSYD. . . MSWVRQTPEKRLEWVAYISRGGGYTYYPDTVKGRF
Template Known Secondary structure 
TT

SS
GGG

...
TT


TTSS


TTTTTT
Template Predicted Secondary structure 









...















Template SS confidence 



























































   12.......20.........30... ......40.........50.........60........
 
   60.........70.........80.........90.........100.. .......110...
Predicted Secondary structure 















......









Query SS confidence 










































. . . . . .










Query Sequence  NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGY. . . . . . LDIQFWTPVSH
Query Conservation              
 
  
   
 
 
 
 
 
           ......           
Alig confidence 










































......










Template Conservation              
 
  
   
 
 
 
                                
Template Sequence  TISRDNAKNTLYLQMSSLKSEDTAMYYCSRHIYYGSSHYYAMDYWGQGTSVTVSSAKTTA
Template Known Secondary structure  GGGT
S

GGG


TTT
SS






S

B
Template Predicted Secondary structure 






















Template SS confidence 



























































   68.70.........80.........90.........100.........110.........120.......
 
   114.....120.........130.........140.... .....150.........160......
Predicted Secondary structure 













.







......
Query SS confidence 






























.





















. . . . . .
Query Sequence  PVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRAA. . . . . .
Query Conservation             
  
    
 
         .   
 
 
              ......
Alig confidence 






























.





















......
Template Conservation             
  
      
      
      
                        
Template Sequence  PSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLS
Template Known Secondary structure 



GGGSSSSBSS

GGGTB
TT


TT
Template Predicted Secondary structure 































Template SS confidence 



























































   119120.........130.........140.........150.........160.........170........
 
   167..170.........180.........190.....
Predicted Secondary structure 







Query SS confidence 




























Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISE
Query Conservation   
 
  
   
 
 
 
 
 
  
   
 
Alig confidence 




























Template Conservation 
 
 
     
 
 


 
          
Template Sequence  SSVTVTSSTWPSQSITCNVAHPASSTKVD
Template Known Secondary structure  TTS

GGGT
Template Predicted Secondary structure 










Template SS confidence 




























   179180.........190.........200.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D