Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.69%DateTue Jul 30 13:19:15 BST 2013
Rank380Aligned Residues162
% Identity14%Templatec1bd2D_
PDB info PDB header:complex (mhc/viral peptide/receptor)Chain: D: PDB Molecule:t cell receptor alpha; PDBTitle: complex between human t-cell receptor b7, viral peptide2 (tax) and mhc class i molecule hla-a 0201
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.... .....60
Predicted Secondary structure 













....................
Query SS confidence 

































. . . . . . . . . . . . . . . . . . . .





Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLF. . . . . . . . . . . . . . . . . . . . YTFYKN
Query Conservation 
 
 
      

  


 
     
        ....................      
Alig confidence 







...






















....................





Template Conservation        
 ...

  
 
 
         
 
 
                       
  
Template Sequence  NSPSLSVQ. . . EGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFT
Template Known Secondary structure 

S...TTS


TT


TTS

TT
STT
Template Predicted Secondary structure 


...


























Template SS confidence 



























































   6...10... ......20.........30.........40.........50.........60..
 
   61........70.........80.........90.........100.........110.........120
Predicted Secondary structure 


























Query SS confidence 



























































Query Sequence  NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQH
Query Conservation             
 
  
   
 
 
 
 
 
                             
Alig confidence 

















































........

Template Conservation             
 
      


 
 
                
 
    ........  
Template Sequence  VFLNKSAKHLSLHIVPSQPGDSAVYFCAAMEGAQKLVFGQGTRLTINPNI. . . . . . . . QN
Template Known Secondary structure  TTTTSS

GGG
SSTT






........SS
Template Predicted Secondary structure 



















........

Template SS confidence 



























































   64.....70.........80.........90.........100.........110... ..
 
   121........130.........140.........150.........160.........170.........180
Predicted Secondary structure 























Query SS confidence 



























































Query Sequence  EATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKN
Query Conservation      
  
    
 
            
 
 
               
 
  
   
 
 
Alig confidence 










































.















Template Conservation      
         
                            .      
 
   
   
Template Sequence  PDPAVYQLRDSKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLD. MRFKSNSAVAWSNKSD
Template Known Secondary structure 







S

TT





SSTTS


.





SS
Template Predicted Secondary structure 



























.






Template SS confidence 



























































   121........130.........140.........150.........160... ......170.........
 
   181.... ....190....
Predicted Secondary structure  ..




Query SS confidence 




. .








Query Sequence  YSCEA. . KNNISREIS
Query Conservation 
 
 
.. 
  
   
Alig confidence 




..








Template Conservation 
 
 
           
Template Sequence  FACANAFNNSIIPEDT
Template Known Secondary structure 

S
SS

S
B
Template Predicted Secondary structure 









Template SS confidence 















   187..190.........200..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D