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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank131Aligned Residues171
% Identity13%Templatec1q1jL_
PDB info PDB header:immune systemChain: L: PDB Molecule:fab 447-52d, light chain; PDBTitle: crystal structure analysis of anti-hiv-1 fab 447-52d in2 complex with v3 peptide
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.
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Query Sequence  QFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . .
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Template Sequence  LTQPPSVSAA. . . PGQKVTISCSGSSSNIGNNY. . . VLWYQQFPGTAPKLLIYGNNKRPS
Template Known Secondary structure  BB

S
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TS
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TTS

BTTTB

T
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   4.....10... ......20.........30... ......40.........50.......
 
   62.......70.........80.........90.... .....100.........110...
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Query Sequence  . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDG. . LIQKKSGYLDIQFWTPVSH
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Template Conservation                  
 
  
   
 
 
 
                            
Template Sequence  GIPDRFSGSKSGTSATLGITGLQTGDEADYFCATWDSGLSADWVFGGGTKLTVLSQPKAA
Template Known Secondary structure  T

TTTT
S

GGG

SSTT

B



S

B
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   57..60.........70.........80.........90.........100.........110......
 
   114.....120.........130.........140.... .....150.........160......
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Query Sequence  PVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRAA. . . . . .
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Template Sequence  PSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKY
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TTT
BSS

TT
TT



TTS
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   113......120.........130.........140.........150.........160.........170..
 
   167..170.........180.........190.....
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Query Sequence  . . . . SLLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  AASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT
Template Known Secondary structure 
SS
TT
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   174.....180.........190.........200......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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