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Job DescriptionA1YIY0
Confidence99.72%DateTue Jul 30 13:19:15 BST 2013
Rank360Aligned Residues163
% Identity14%Templatec2aj3F_
PDB info PDB header:immune systemChain: F: PDB Molecule:fab m18, heavy chain; PDBTitle: crystal structure of a cross-reactive hiv-1 neutralizing2 cd4-binding site antibody fab m18
Resolution2.03 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPSETLSLTCTVSGASVNNYY. . . WTWVRQPPGKGLEWIGNVYDSGDTNYNPSLSSRLS
Template Known Secondary structure 
TTS

BSS
GGGS
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TTS


SSS


B
TTTGGG
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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100... ......110....
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYL. . . . . . DIQFWTPVSHP
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Template Conservation            

 
  
   
 
 
 
 
                               
Template Sequence  LSMDTSKNQFSLRLSSVTAADTATYYCARYHRHFIRGPLSFDYWGRGTLVTVSSASTKGP
Template Known Secondary structure  GGGT
S

GGG
TTT







B

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   6970.........80.........90.........100.........110.........120........
 
   115....120.........130.........140.........150.........160... ...
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Query Sequence  VLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . RAA
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Template Sequence  SVFPLAPSSKSTSGGTSALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS
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TTSTTBSS

TTTTB
TT



TTS
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   120.........130.........140.........150.........160.........170.........
 
   167..170.........180.........190.....
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Query Sequence  SLLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  SVVTVPSSSLGTQTYICNVNHKPSNTKVD
Template Known Secondary structure  GGGGGT


GGGT
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   180.........190.........200........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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