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Job DescriptionA1YIY0
Confidence99.58%DateTue Jul 30 13:19:15 BST 2013
Rank423Aligned Residues160
% Identity13%Templatec3ixxG_
PDB info PDB header:virusChain: G: PDB Molecule:e53 fab fragment (chain h); PDBTitle: the pseudo-atomic structure of west nile immature virus in2 complex with fab fragments of the anti-fusion loop antibody3 e53
Resolution15.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VLPGGSLRLSCATSGFTFTDYY. . . MTWVRQPPGKALEWLGFIGNKANDYTTEYSASVKG
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   12.......20.........30... ......40.........50.........60........
 
   60.........70.........80.........90.........100....... ..110.....
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Query Sequence  . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQF. . WTPVSHPV
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Template Sequence  RFTISRDDSQSILYLQMSTLRAEDRATYYCATVYGNYPYFDVWGAGTTVAVSSAKTTPPS
Template Known Secondary structure  S



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   6970.........80.........90.........100.........110.........120........
 
   116...120.........130.........140.........150.........160... .....
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Query Sequence  LTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . RAASL
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Template Sequence  VYPLAPVCGGTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSGLYTLSSS
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   129130.........140.........150.........160.........170.........180........
 
   169170.........180.........190..
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Query Sequence  LASVKAEWSTKNYSCEAKNNISRE
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Template Sequence  VTVTSSTWPSQSITCNVAHPASST
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   189190.........200.........210..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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