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Job DescriptionA1YIY0
Confidence99.85%DateTue Jul 30 13:19:15 BST 2013
Rank103Aligned Residues166
% Identity16%Templatec1ypzE_
PDB info PDB header:immune systemChain: E: PDB Molecule:t cell receptor delta; PDBTitle: immune receptor
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPSALSLH. . . EGTDSALRCNFTTTMRS. . . . . . VQWFRQNSRGSLISLFYLASGTKENG
Template Known Secondary structure  S
S...TT

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TTS

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   7..10.... .....20.........30. ........40.........50.......
 
   62.......70.........80.........90.........100.........110.. .
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Query Sequence  . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVS. . . H
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Template Sequence  RLKSAFDSKERRYSTLHIRDAQLEDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVE
Template Known Secondary structure  T
TTT
S
S

GGG





TT










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   58.60.........70.........80.........90.........100.........110.......
 
   114.....120.........130.........140.... .....150.........160.. .......170
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Query Sequence  PVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPS. . GRAASLLA
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Template Sequence  PKSQPPAKPSVFIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAV
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TTSSS


SS



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   118.120.........130.........140.........150.........160.........170.......
 
   171........180.........190.....
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Query Sequence  SVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  KLGQYGDSNSVTCSVQHNSETVHST
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SSTTT
TTST
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   178.180.........190.........200..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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