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Job DescriptionA1YIY0
Confidence99.73%DateTue Jul 30 13:19:15 BST 2013
Rank347Aligned Residues171
% Identity11%Templatec2a6dB_
PDB info PDB header:immune systemChain: B: PDB Molecule:germline antibody 36-65 fab heavy chain; PDBTitle: crystal structure analysis of the anti-arsonate germline2 antibody 36-65 in complex with a phage display derived3 dodecapeptide rlliadppspre
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60..
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ELVRAGSSVKMSCKASGYTFTSYG. . . INWVKQRPGQGLEWIGYINPGNGYTKYNEKFKG
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   10.........20.........30... ......40.........50.........60......
 
   63......70.........80.........90...... ...100.........110......
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Query Sequence  . . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLI. QKKSGYLDIQFWTPVSHPVL
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Template Conservation 
             
 
  
   
 
 
 
                              
Template Sequence  KTTLTVDKSSSTAYMQLRSLTSEDSAVYFCARSVYYGGSYYFDYWGQGTTLTVSSAKTTP
Template Known Secondary structure  TTTTTS

GGG


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B
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   67..70.........80.........90.........100.........110.........120......
 
   117..120.........130.........140.........150.........160..... ...
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Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRA. . . . . . . . ASL
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Template Sequence  PSVYPLAPGSTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSV
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   127..130.........140.........150.........160.........170.........180......
 
   169170.........180.........190.........200.....
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Query Sequence  LASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  TV. PSSPRPSETVTCNVAHPASS. . . TKVDKKIVPRD
Template Known Secondary structure  .TTTTTTS

GGGT...

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   190. ........200.........210. ........220..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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