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Job DescriptionA1YIY0
Confidence99.85%DateTue Jul 30 13:19:15 BST 2013
Rank107Aligned Residues177
% Identity12%Templatec3dnkB_
PDB info PDB header:immune systemChain: B: PDB Molecule:ighm protein; PDBTitle: enzyme deglycosylated human igg1 fc fragment
Resolution2.84 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
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   22.......30. ........40.........50.........60.........70.
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Query Sequence  NPELTEFTNS. . . . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . .
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Template Sequence  GPSVFLFPPKPKDTLMISRTPEVTCVVVDVS. HEDPEVKFNWYVDGVEVHNAKTKPREEQ
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   1237..1240.........1250.........1260....... ..1270.........1280.........1290.....
 
   72.......80.........90.........100.........110.........120.
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Query Sequence  . . . . . . . . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHE
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Template Sequence  YDSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKT. . ISKAKGQPREPQVYTLPP
Template Known Secondary structure  SSS


TT

TTSSS
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   1296...1300.........1310.........1320.........1330..... ....1340.........1350...
 
   122.......130.........140.... .....150.........160.... .....170.
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Query Sequence  ATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . AASLLAS
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Template Sequence  SREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVD
Template Known Secondary structure 
GGGTTSSBSS

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   1354.....1360.........1370.........1380.........1390.........1400.........1410...
 
   172.......180.........190.........200.
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Query Sequence  VKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  KSRWQQGNVFSCSVMHEALHNHYTQKSLSL
Template Known Secondary structure  T



TTSGGG

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   1414.....1420.........1430.........1440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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