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Job DescriptionA1YIY0
Confidence99.70%DateTue Jul 30 13:19:15 BST 2013
Rank377Aligned Residues156
% Identity13%Templatec1uz8H_
PDB info PDB header:immune systemChain: H: PDB Molecule:igg fab (igg3, kappa) heavy chain 291-2g3-a; PDBTitle: anti-lewis x fab fragment in complex with lewis x
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VQPGGSQKLSCAASGFDFSGYW. . . MSWVRQAPGKGLEWIGEINPDSSTINYTPSLKDKF
Template Known Secondary structure 
TT

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GGGS
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TTS

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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100.........110.........
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Query Sequence  . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  IISRDNAKNTLYLQMSKVRSEDTALYYCARETGTRFDYWGQGTTLTVSSATTTAPSVYPL
Template Known Secondary structure  GGGT
S

GGG
STTSTT




SS

B

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   68.70.........80.........90.........100.........110.........120.......
 
   120.........130.........140.... .....150.........160..... ....170..
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRA. . . . . . ASLLASV
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Template Sequence  . . . . . VPGGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVP
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BSS

GGGTB
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   125....130.........140.........150.........160.........170.........
 
   173......180.........190...
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Query Sequence  KAEWSTKNYSCEAKNNISREI
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Template Sequence  SSTWPSQTVICNVAHPASKTE
Template Known Secondary structure  TTTTTTS

GGGT
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   185....190.........200.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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