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Job DescriptionA1YIY0
Confidence99.73%DateTue Jul 30 13:19:15 BST 2013
Rank348Aligned Residues180
% Identity13%Templatec2i5yR_
PDB info PDB header:viral protein/immune systemChain: R: PDB Molecule:antibody 17b heavy chain; PDBTitle: crystal structure of cd4m47, a scorpion-toxin mimic of cd4, in complex2 with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody3 17b
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.........60......
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Query Sequence  EAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQD. . . . . . . .
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Template Sequence  EVQLVESGAEV. . . . KKPGSSVKVSCKASGDTFIR. . . YSFTWVRQAPGQGLEWMGRIIT
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TT

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GGG...
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   1........10. ........20.........30. ........40.........50...
 
   67..70.........80.........90.........100....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . RSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLD
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Template Sequence  ILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVYEGEADEGEYDNNG
Template Known Secondary structure  GGT
TT
TT
TTTT
S

GGG



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   53......60.........70.........80.........90.........100.........110..
 
   105....110.........120... ......130.........140.........150.........
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Query Sequence  IQFWTPVSHPVLTLQHEAT. . . . . NLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPL
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Template Sequence  FLKHWGQGTLVTVSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVH
Template Known Secondary structure  S
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BSS

GGGTB
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Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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