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Job DescriptionA1YIY0
Confidence99.87%DateTue Jul 30 13:19:15 BST 2013
Rank69Aligned Residues171
% Identity18%Templatec2wimA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:neural cell adhesion molecule 2; PDBTitle: crystal structure of ncam2 ig1-3
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   25....30.........40.........50.........60.........70. ....
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Query Sequence  LTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . . . . . . VFSA
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Template Sequence  LSKVELSVGESKFFTCTAIGEPESIDW. . . . . YNPQGEKIISTQRVVVQKEGVRSRLTIY
Template Known Secondary structure 
STT

S

S
.....B
TT

B


BTTTT
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   27..30.........40.........50... ......60.........70.........80.
 
   76...80.........90.........100........
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Query Sequence  EAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  NANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSS
Template Known Secondary structure  S

GGG

SSS



B

S


STTS




B
S
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   82.......90.........100.........110.........120.........130.........140.
 
   109
Predicted Secondary structure  ...........................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . T
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Template Sequence  PAPAVSWLYHTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIV
Template Known Secondary structure  S




B


SS
TTS
TT

GGG
TTTT
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   142.......150.........160.........170.........180.........190.........200.
 
   110.........120.........130.........140.........150....... ..160.......
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Query Sequence  PVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGK. . PLAPSGRAAS
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Template Conservation                                      
 
   
  
              
Template Sequence  NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE
Template Known Secondary structure  B



B
S
S

SSS


B


BS

TT


TTT
STT
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   206...210.........220.........230.........240.........250.........260.....
 
   168.170.........180.........190.........200.
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Query Sequence  LLASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Conservation 
 
  
   
 
 
 
 
 
  
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Template Sequence  LTVRNIINSDGGPYVCRATNKAGEDEKQ. AFLQV
Template Known Secondary structure  S

STT
TT.
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   266...270.........280.........290... .....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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