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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank135Aligned Residues172
% Identity14%Templatec3agvB_
PDB info PDB header:immune system/rnaChain: B: PDB Molecule:ig gamma-1 chain c region; PDBTitle: crystal structure of a human igg-aptamer complex
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30. ........40.... .....50.........60.........70.
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Query Sequence  PELTEFTNS. . . . . . ETMDVILKCTIKV. . . . DPKNPTLQLFYTFYKNNHVIQDRSPHS.
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Template Sequence  PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEV. . . . . KFNWYVDGVEVHNAKTKPR
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   238.240.........250.........260.........270... ......280.........290..
 
   72.......80.........90.........100.........110........
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Query Sequence  . . . . . . . . . . . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTL
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Template Sequence  EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPR. . EPQVYT
Template Known Secondary structure  TTT

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   293......300.........310.........320.........330.........340.... .....350
 
   119120.........130.........140.... .....150.........160..... ...
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Query Sequence  QHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRA. . . . . . . . . ASL
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Template Sequence  LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKL
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GGGGGSSBSS

TT





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   351........360.........370.........380.........390.........400.........410
 
   169170.........180.........190.........200.
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Query Sequence  LASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  TVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSL
Template Known Secondary structure  TT


TTSGGG

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   411........420.........430.........440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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