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Job DescriptionA1YIY0
Confidence99.89%DateTue Jul 30 13:19:15 BST 2013
Rank47Aligned Residues175
% Identity17%Templatec1dgiR_
PDB info PDB header:virus/viral protein, receptorChain: R: PDB Molecule:poliovirus receptor; PDBTitle:
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.....
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQ. . . . . . . . . . . . . . .
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Template Conservation   
  
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Template Sequence  APTQVPGF. . . LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSES
Template Known Secondary structure 

S
...TT





SS


GGG






B


SSS

SS
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   33......40 .........50.........60.........70.........80.........
 
   66...70.........80.........90.........100........
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Query Sequence  . . . . . . . . . . . . DRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . .
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Template Conservation                   

 
      
 
 
                            
Template Sequence  KRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA
Template Known Secondary structure  STTTTT



TTTB



S

GGG


B

BTTTB

B






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   90.........100.........110.........120.........130.........140.........
 
  
Predicted Secondary structure  ............................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                                              
Template Sequence  EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV
Template Known Secondary structure 



S







SS



TTTGGGTT

TT
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   150.........160.........170.........180.........190.........200.........
 
   109110.........120.........130........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAH
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Template Conservation           
                                       
    
 
   
Template Sequence  PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR
Template Known Secondary structure  TTTBTTB

B

TTTT

B






SS



SS


S

SS

B





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   210.........220.........230.........240.........250.........260.........
 
   139140.........150.........160.........170.........180.........190........
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Query Sequence  QGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKK
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Template Conservation    
 
  
 
 
 
  
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Template Sequence  SNPEPTGYNWSTTMGPLPPFAVAQGAQ. . LLIRPVDKPINTTLICNVTNALGARQAE. LT
Template Known Secondary structure  SSS


SSS



SSSSTTT..SS

GGG
B





SSS




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   270.........280.........290...... ...300.........310.........320.... ..
 
   199200.
Predicted Secondary structure 
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Query Sequence  FPL
Query Conservation 
 
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Template Conservation 
 
Template Sequence  VQV
Template Known Secondary structure 
Template Predicted Secondary structure 
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   327..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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