Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.96%DateTue Jul 30 13:19:15 BST 2013
Rank1Aligned Residues173
% Identity14%Templatec3dmkA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:down syndrome cell adhesion molecule (dscam) isoform PDBTitle: crystal structure of down syndrome cell adhesion molecule (dscam)2 isoform 1.30.30, n-terminal eight ig domains
Resolution4.19 Å
Model Dimensions (Å)X:38.427 Y:93.364 Z:28.609

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40.........50.........60.... .....
Predicted Secondary structure 














..........




Query SS confidence 












































. . . . . . . . . .




Query Sequence  FPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVI. . . . . . . . . . QDRSP
Query Conservation 

 
 
      

  


 
     
                  ..........     
Alig confidence 
































....







..........




Template Conservation               
    
 
          
 ....
   
  
               
Template Sequence  IIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID. . . . WTLDGQAISEDLGITTSRVGRRG
Template Known Secondary structure 
B




SS
SS
B


SSS

....TTB


GGGT
TTT
Template Predicted Secondary structure 

















....











Template SS confidence 



























































   586...590.........600.........610........ .620.........630.........640.
 
   70.........80.........90.........100.........110.........120.........
Predicted Secondary structure 



























Query SS confidence 



























































Query Sequence  HSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGD
Query Conservation    
 
  
   
 
 
 
 
 
                                 
  
 
Alig confidence 




































......
















Template Conservation    
 
      
 
 
 
 
 
  
    
  
 
  ...... 
 
        
  
 
Template Sequence  SVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV. . . . . . PPRWILEPTDKAFAQGS
Template Known Secondary structure  S

GGG

SS

......



TT
Template Predicted Secondary structure 








......








Template SS confidence 



























































   642.......650.........660.........670........ .680.........690.....
 
   130.........140.........150.........160... ......170.........180..
Predicted Secondary structure 













.......



Query SS confidence 

































. . . . . . .


















Query Sequence  KVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . RAASLLASVKAEWSTKNYS
Query Conservation     
 
            
 
 
           .......    
 
  
   
 
 
 
Alig confidence 












.



















.......


















Template Conservation     
 
   
 
 .
 
 
 
 
  
                   
 
  
   
 
 
 
Template Sequence  DAKVECKADGFPK. PQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYL
Template Known Secondary structure 

S
.



SSSTT

B



BTTTT
S

GGG
Template Predicted Secondary structure 


.
















Template SS confidence 



























































   696...700........ .710.........720.........730.........740.........750....
 
   183......190.........200...
Predicted Secondary structure 




Query SS confidence 




















Query Sequence  CEAKNNISREISELKKFPLVV
Query Conservation 
 
 
  
   
    
 
  
Alig confidence 




















Template Conservation 
 
 
  
   
    
 
 
Template Sequence  CEAINGIGSGLSAVIMISVQA
Template Known Secondary structure 
SSSS

Template Predicted Secondary structure 




Template SS confidence 




















   755....760.........770.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D