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Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank300Aligned Residues178
% Identity18%Templatec1nqbC_
PDB info PDB header:immunoglobulinChain: C: PDB Molecule:single-chain antibody fragment; PDBTitle: trivalent antibody fragment
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60..
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Query Sequence  AEAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . .
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Template Sequence  VQLQQ. . SGAEL. . . . VKPGASVKLSCKASGYTFTSYW. . . MHWVKQRPGRGLEWIGRID
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TT


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   2.... ...10. ........20.........30... ......40.........50..
 
   63......70.........80.........90.........100...
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Query Sequence  . . . . . . . . . . . . . . . . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYL
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Template Sequence  PNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYF. DYWG
Template Known Secondary structure  TTT


GGGTTTGGGT
S

GGG


SSSS
S
.S
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   53......60.........70.........80.........90.........100....... ..110.
 
   104.....110.........120.........130....... ..140.....
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Query Sequence  DIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEA. . . . . . . . . . . . . . . . . . HQGSLPIF
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Template Sequence  QGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKL
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S
TT

SS

B
TTS
B

TTS

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   112.......120.........130.........140.........150.........160.........170.
 
   146...150....... ..160.........170.........180.........190...... ...200
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Query Sequence  YSFYINGEILGK. . . . PLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISEL. KKFP
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Template Sequence  LIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYC. FQGSHVPYTFGGGTKLE
Template Known Secondary structure  TTT
TT

TTTTSS

GGG
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   172.......180.........190.........200.........210... ......220.........230
 
   201.
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Query Sequence  LV
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Template Conservation 
 
Template Sequence  IK
Template Known Secondary structure 
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   231.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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