Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.85%DateTue Jul 30 13:19:15 BST 2013
Rank94Aligned Residues167
% Identity12%Templatec1w72L_
PDB info PDB header:immune systemChain: L: PDB Molecule:hyb3 light chain; PDBTitle: crystal structure of hla-a1:mage-a1 in complex with fab-2 hyb3
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
Predicted Secondary structure 













...................
Query SS confidence 








































. . . . . . . . . . . . . . . . . . .
Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
Query Conservation 
 
 
      

  


 
     
               ...................
Alig confidence 







...



















.....




...................
Template Conservation   
  
 
 ... 
  
 
 
         
 .....
                       
Template Sequence  QPPSVSVA. . . PGQTARITCGGNNIGSRSVH. . . . . WYQQKPGQAPVLVVYDDSDRPSGI
Template Known Secondary structure 

S
...TTS

TTGGGS

.....
TTS

BTTTB

TTS
Template Predicted Secondary structure 


...








.....













Template SS confidence 



























































   6...10... ......20.........30... ......40.........50.......
 
   62.......70.........80.........90......... 100.........110......
Predicted Secondary structure  ....















.









Query SS confidence  . . . .





































.
















Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. SGYLDIQFWTPVSHPVL
Query Conservation  ....          
 
  
   
 
 
 
 
 
        .                 
Alig confidence  ....





































.
















Template Conservation                
 
      
 
 
 
                              
Template Sequence  PERFSGSNSGNMATLTISRVEAGDEADYYCQVWDSRTDHWVFGGGTDLTVLGQPKAAPSV
Template Known Secondary structure 
TTTTSS

GGG
TTTT







B

Template Predicted Secondary structure 
































Template SS confidence 



























































   5960.........70.........80.........90.........100.........110........
 
   117..120.........130.........140.... .....150.........160.... .
Predicted Secondary structure 













.







..........
Query SS confidence 



























.



















. . . . . . . . . .
Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . . A
Query Conservation          
  
    
 
         .   
 
 
            .......... 
Alig confidence 



























.



















..........
Template Conservation                                  
                           
Template Sequence  TLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAAS
Template Known Secondary structure 


TT
BSS

TT
TT



TTS
Template Predicted Secondary structure 
























Template SS confidence 



























































   116...120.........130.........140.........150.........160.........170.....
 
   166...170.........180.........190.....
Predicted Secondary structure 







Query SS confidence 





























Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISE
Query Conservation    
 
  
   
 
 
 
 
 
  
   
 
Alig confidence 





























Template Conservation 
 
 
      
 
 


 
 
  

   
Template Sequence  SYLSLTPEQWKSHRSYSCQVTHEGSTVEKT
Template Known Secondary structure 
TSS
TT
Template Predicted Secondary structure 





Template SS confidence 





























   177..180.........190.........200......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D