Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.86%DateTue Jul 30 13:19:15 BST 2013
Rank84Aligned Residues177
% Identity12%Templatec2j6eA_
PDB info PDB header:immune systemChain: A: PDB Molecule:ig gamma-1 chain c region; PDBTitle: crystal structure of an autoimmune complex between a human2 igm rheumatoid factor and igg1 fc reveals a novel fc3 epitope and evidence for affinity maturation
Resolution3.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30. ........40.........50.........60.........70.
Predicted Secondary structure 




......













....
Query SS confidence 









. . . . . .







































. . . .
Query Sequence  NPELTEFTNS. . . . . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . .
Query Conservation   
 
      ......

  


 
     
                         ....
Alig confidence 









......


















.



















....
Template Conservation   
      
 
      
  
 
 
 
        .   
 
                  
Template Sequence  GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEEP. EVKFNWYVDGVEVHNAKTKPREEQ
Template Known Secondary structure 




STTS


SSS
.
TT



Template Predicted Secondary structure 
















.







Template SS confidence 



























































   237..240.........250.........260.........270. ........280.........290.....
 
   72.......80.........90.........100.........110.........120.
Predicted Secondary structure  ..........





















Query SS confidence  . . . . . . . . . .

















































Query Sequence  . . . . . . . . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHE
Query Conservation  ..........
 
  
   
 
 
 
 
 
                              
Alig confidence  ..........






































..








Template Conservation            
 
      
 
 
 
                       ..         
Template Sequence  YNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPR. . EPQVYTLPP
Template Known Secondary structure  TTS


TT

TT
SS

S

S

B..



Template Predicted Secondary structure 





























..


Template SS confidence 



























































   296...300.........310.........320.........330.........340.... .....350...
 
   122.......130.........140.... .....150.........160...... ...170.
Predicted Secondary structure 











.







.........
Query SS confidence 






















.





















. . . . . . . . .




Query Sequence  ATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGRAA. . . . . . . . . SLLAS
Query Conservation     
  
    
 
         .   
 
 
              ......... 
 
 
Alig confidence 






















.





















.........




Template Conservation     
  
    
 
 
    
      
                          
 
 
 
Template Sequence  SRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVD
Template Known Secondary structure 
GGGTTSSBSS

SSSB
SS



TTS
Template Predicted Secondary structure 





















Template SS confidence 



























































   354.....360.........370.........380.........390.........400.........410...
 
   172.......180.........190.........200.
Predicted Secondary structure 







Query SS confidence 





























Query Sequence  VKAEWSTKNYSCEAKNNISREISELKKFPL
Query Conservation   
   
 
 
 
 
 
  
   
    
 
Alig confidence 





























Template Conservation           


 
 
  
       

  
Template Sequence  KSRWQQGNVFSCSVMHEALHNHYTQKSLSL
Template Known Secondary structure  T

TTSGGG
Template Predicted Secondary structure 











Template SS confidence 





























   414.....420.........430.........440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D