Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.81%DateTue Jul 30 13:19:15 BST 2013
Rank189Aligned Residues173
% Identity14%Templatec3ov6A_
PDB info PDB header:immune systemChain: A: PDB Molecule:beta-2-microglobulin, t-cell surface glycoprotein cd1c, t- PDBTitle: cd1c in complex with mpm (mannosyl-beta1-phosphomycoketide)
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24.....30.........40.........50.........60.........70. .
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Query Sequence  ELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . . . . . . . . V
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Template Sequence  VYSRHPAENGKSNFLNCYVSGFHPSDIE. . . VDLLKNGERIEKVEHSDLSFSKDWSFYLL
Template Known Secondary structure  SS


TTS
BSS
...TT
SS




TT

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   10091010.........1020.........1030...... ...1040.........1050.........1060.....
 
   73......80.........90.........100........
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Query Sequence  FSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  YYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDMGGGGEHVSFHVIQIFSFVNQSWARGQ
Template Known Secondary structure 


SS

TT
SS

GGGTT


SSSS
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   1066...1070.........1080.........1090.........1100.........1110.........1120.....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                              
 
   
                         
Template Sequence  GSGWLDELQTHGWDSESGTIIFLHQWSKGQFSNEELSDLELLFRFYLFGLTREIQDHASS
Template Known Secondary structure  TTTTTT
STTTTTT

SS


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   28.30.........40.........50.........60.........70.........80.......
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KYPFEVQVKAGCELHSGGSPEGFFQVAFNGLDLLSFQQTTWVPSPGCGSLAQSVCHLLNH
Template Known Secondary structure 


TTS
TTTT
SS

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   91........100.........110.........120.........130.........140.........150
 
   109110.........120.........130........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAH
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Template Sequence  QYEGVTETVYNLIRSTCPRFLLGLLDAGKMYVHRQVKPEAWLSSGPSPGPGRLQLVCHVS
Template Known Secondary structure  T

STS
S
B


S

STT
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   151........160.........170.........180.........190.........200.........210
 
   139140.... .....150.........160. ........170.........180.........190.
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Query Sequence  QGSLPI. FYSFYINGEILGKPLAP. . . . . . SGRAASLLASVKAEWSTKNYSCEAKNNISR
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Template Sequence  GFYPKPVWVMWMRGEQEQQGTQLGDILPNAQGTWYLRATLDVADGEAAGLSCRVKHSSLE
Template Known Secondary structure  BSS

TT
TT




TTS
GGG
TT
GGGT
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   211........220.........230.........240.........250.........260.........270
 
   192.......
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Query Sequence  EISELKKF
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Template Conservation          
Template Sequence  GQDIILYW
Template Known Secondary structure  T


Template Predicted Secondary structure 

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   271.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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