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Job DescriptionA1YIY0
Confidence99.64%DateTue Jul 30 13:19:15 BST 2013
Rank403Aligned Residues165
% Identity13%Templatec1q72H_
PDB info PDB header:immune systemChain: H: PDB Molecule:fab m82g2, heavy chain; PDBTitle: anti-cocaine antibody m82g2 complexed with cocaine
Resolution1.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60...
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHV. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VQPGGSMKLSCAASGFTFSDAWVDWVRQSPGKGLEWVAEIRNKANNHATKYTESVKGRFT
Template Known Secondary structure 
TT

SS
GGGSTTT

GGGTT

GGGBTT
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   12.......20.........30.........40.........50.........60.........70.
 
   64.....70.........80.........90.........100....... ..110.........
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Query Sequence  . . . IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQF. WTPVSHPVLTLQ
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Template Conservation             
 
  
   
 
 
 
                                 
Template Sequence  ISRDDSKSSVYLQMNSLRAEDTGIYYCTSVPQLGRGFAYWGQGTLVTVSAASTTPPSVYP
Template Known Secondary structure  GGGT
S

GGG

TT

SS




S


B

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   6970.........80.........90.........100.........110.........120........
 
   120.........130.........140.........150.........160... ......170.
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . RAASLLAS
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Template Sequence  LAPGSGGAGSMVTLGCLVKGYFPEPVTVTWNSGALSSGVHTFPAVLNGDLYTLSSSVTV.
Template Known Secondary structure 

SS




BSS

GGGTB
TT



SSS.
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   124.....130.........140.........150.........160.........170.........180..
 
   172.......180.........190.....
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Query Sequence  VKAEWSTKNYSCEAKNNISREISE
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Template Conservation       
   


 
 
        
Template Sequence  PSSTWPSQTVTCNVAHPASSTQVD
Template Known Secondary structure  TTTTTTS

GGGT
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   194.....200.........210.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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