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Job DescriptionA1YIY0
Confidence99.69%DateTue Jul 30 13:19:15 BST 2013
Rank381Aligned Residues161
% Identity10%Templatec1nfdH_
PDB info PDB header:complex (immunoreceptor/immunoglobulin)Chain: H: PDB Molecule:h57 fab; PDBTitle: an alpha-beta t cell receptor (tcr) heterodimer in complex with an2 anti-tcr fab fragment derived from a mitogenic antibody
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........60.
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  DLVQPGSSLKVSCAASGFTFSDFW. . . MYWVRQAPGKGLEWVGRIKNIPNNYATEYADSV
Template Known Secondary structure 

TT

SS
GGG
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TTS


TTTTT

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   10.........20.........30... ......40.........50.........60......
 
   62.......70.........80.........90.........100... ......110..
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Query Sequence  . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYL. . . DIQFWTPVS
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Template Conservation                  
 
  
   
 
 
 
 
                          
Template Sequence  RGRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRAGRFDHFDYWGQGTMVTVSSATTTAP
Template Known Secondary structure  TTTTTTT
S

GGG


SS
BS







S





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   64.....70.........80.........90.........100.........110.........120...
 
   113......120.........130.........140.........150.........160....
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Query Sequence  HPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGR. . . . . . . .
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Template Sequence  SVYPLAPACDSTTSTTDTVTLGCLVKGYFPEPVTVSWNSGALTSGVHTFPSVLHSGLYSL
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SS


S
SS

GGGT

TT




BTTB
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   120.........130.........140.........150.........160.........170.........
 
   165....170.........180.........190..
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Query Sequence  AASLLASVKAEWSTKNYSCEAKNNISRE
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Template Sequence  SSSVTV. PSSTWPKQPITCNVAHPASST
Template Known Secondary structure  .TTSTTTS


TTS

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   188.190... ......200.........210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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