Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.76%DateTue Jul 30 13:19:15 BST 2013
Rank307Aligned Residues160
% Identity15%Templatec4gkzA_
PDB info PDB header:immune systemChain: A: PDB Molecule:alpha chain of class ii tcr; PDBTitle: ha1.7, a mhc class ii restricted tcr specific for haemagglutinin
Resolution2.39 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60.
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  HVSVSEGALVLLRCNYSSSVPP. . . . . YLFWYVQYPNQGLQLLLKYTSAATLVKGINGFE
Template Known Secondary structure  TTS



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   910.........20.........30 .........40.........50.........60...
 
   62.......70.........80.........90.........100 .........110......
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKS. . . . GYLDIQFWTPVSHPVL
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Template Sequence  AEFKKSETSFHLTKPSAHMSDAAEYFCAVSESPFGNEKLTFGTGTRLTIIPNIQNPDPAV
Template Known Secondary structure  TTTTSS

GGG
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   64.....70.........80.........90.........100.........110.........120...
 
   117..120.........130.........140.........150.........160... ......170....
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Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . RAASLLASVKA
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Template Sequence  YQL. . . . . RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVA
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   124.. ...130.........140.........150.........160.........170........
 
   175....180.........190......
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Query Sequence  EWSTKNYSCEAKNNISREISEL
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Template Sequence  WSNKSDFACANAFNNSIIPEDT
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BTTBT

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B
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   179180.........190.........200
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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