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Job DescriptionA1YIY0
Confidence99.73%DateTue Jul 30 13:19:15 BST 2013
Rank346Aligned Residues163
% Identity10%Templatec1pkqG_
PDB info PDB header:immune systemChain: G: PDB Molecule:(8-18c5) chimeric fab, heavy chain; PDBTitle: myelin oligodendrocyte glycoprotein-(8-18c5) fab-complex
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60....
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVI. . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGASVEISCKATGYTFSSFWIEWVKQRPGHGLEWIGEILPGRGRTNYNEKFKGKATFT
Template Known Secondary structure 
TTSSS
GGGS
TTTTTTT
GGGBTTB
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   12.......20.........30.........40.........50.........60.........70.
 
   65....70.........80.........90.........100.........110.........120..
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Query Sequence  . . QDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEA
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Template Sequence  AETSSNTAYMQLSSLTSEDSAVYYCATGNTMVNMPYWGQGTTVTVSSA. . . STKGPSVFP
Template Known Secondary structure  GGGTS

GGG


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   71........80.........90.........100.........110........ .120.......
 
   123......130.........140.........150.........160... ......170....
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Query Sequence  TNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . . RAASLLASVKA
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Template Conservation            
 
             
                   
     
 
 
   
Template Sequence  LAPSSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSS
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SS

GGGTB
TT



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TT
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   124.....130.........140.........150.........160.........170.........180...
 
   175....180.........190.....
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Query Sequence  EWSTKNYSCEAKNNISREISE
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Template Sequence  SLGTQTYICNVNHKPSNTKVD
Template Known Secondary structure  GGGT


GGGT
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   188.190.........200........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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