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Job DescriptionA1YIY0
Confidence99.75%DateTue Jul 30 13:19:15 BST 2013
Rank316Aligned Residues146
% Identity13%Templatec3agvA_
PDB info PDB header:immune system/rnaChain: A: PDB Molecule:ig gamma-1 chain c region; PDBTitle: crystal structure of a human igg-aptamer complex
Resolution2.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60.........70. ........80..
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Query Sequence  ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . . . . . . VFSAEAKEENS
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Template Sequence  ISRTPEVTCVE. . . . . . . . . . VKFNWYVDGVEVHNAKTKPREEQYVVSVLTVLHQDWLNG
Template Known Secondary structure  TTS




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TT


B




S






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   253......260... ......270.........280.........290.........300..
 
   83......90.........100.........110.........120.........130.........140..
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Query Sequence  GLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSL
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Template Sequence  KEYKCKTISKAKG. . . . . . . . . . . . . . QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYP
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B




GGGGGSSBS
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   317..320......... 330.........340.........350.........360..
 
   143 ......150.........160... ......170.........180.........190..
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Query Sequence  P. IFYSFYINGEILGKPLAPSG. . . . . . . . . RAASLLASVKAEWSTKNYSCEAKNNISRE
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Template Sequence  SDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHN
Template Known Secondary structure  S

TT
SS



TTS
TT


TTSGG
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   375....380.........390.........400.........410.........420.........430....
 
   193......200.
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Query Sequence  ISELKKFPL
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Template Conservation       
  
Template Sequence  HYTQKSLSL
Template Known Secondary structure  G

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   435....440...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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