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Job DescriptionA1YIY0
Confidence99.85%DateTue Jul 30 13:19:15 BST 2013
Rank93Aligned Residues163
% Identity18%Templatec1iraY_
PDB info PDB header:complex (cytokine receptor/antagonist)Chain: Y: PDB Molecule:interleukin-1 receptor; PDBTitle: complex of the interleukin-1 receptor with the interleukin-1 receptor2 antagonist (il1ra)
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60........ .70.........80..
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Query Sequence  ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRS. . . . . . . . . PHSVFSAEAKEENS
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Template Sequence  ANEIDVRPCPLNPNEHKGTIT. . . . WYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS
Template Known Secondary structure  TTS





GGG
SS....
SSTTSB



TTSSTTTT

GGG
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   16...20.........30...... ...40.........50.........60.........70.
 
   83......90.........100........
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Query Sequence  GLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE
Template Known Secondary structure  TT


TT
SS
GGG
SSS

TTGGGG
BT
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   72.......80.........90.........100.........110.........120.........130.
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITR
Template Known Secondary structure  TTB



TT



SSSTTSS

GGG
TT
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   132.......140.........150.........160.........170.........180.........190.
 
   109110.........120.........130.........140.........150........
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Query Sequence  . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKP
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Template Sequence  VIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLS. DIAYWKWNGSVIDED
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S

TT


TT.
TT

TT
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   192.......200.........210.........220.........230..... ....240.........250
 
   159160. ........170....... ..180.........190.........
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Query Sequence  LAP. . . . . . . . . . . . . . . . SGRAASLLASVKAEWS. TKNYSCEAKNNISREISELKKF
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Template Conservation                           
 
  
   
  
 
 
 
 
  
  
  
 
 
Template Sequence  DPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI
Template Known Secondary structure 
SS

SS
GGGSS

GGGGSS

SS
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   251........260.........270.........280.........290.........300........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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