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Job DescriptionA1YIY0
Confidence99.94%DateTue Jul 30 13:19:15 BST 2013
Rank7Aligned Residues178
% Identity18%Templatec3shsA_
PDB info PDB header:viral proteinChain: A: PDB Molecule:hoc head outer capsid protein; PDBTitle: three n-terminal domains of the bacteriophage rb49 highly immunogenic2 outer capsid protein (hoc)
Resolution1.95 Å
Model Dimensions (Å)X:119.688 Y:40.086 Z:49.951

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30.. .......40.........50.........60.........70........
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Query Sequence  PELTEFTNSE. . . . TMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHSVFSAEAK
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Template Sequence  FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSN. LTYTWTKDDQPHENNT. ATLTVADAT
Template Known Secondary structure  S
SSB
TT

SSS



.TT
S

S.SSS

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   3......10.........20.........30..... ....40.........50. ........60
 
   7980.........90.........100........
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Query Sequence  EENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  SENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSG
Template Known Secondary structure  GGG
TTT





B

SS
S
SS

TT
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   61........70.........80.........90.........100.........110.........120
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKIM
Template Known Secondary structure  S

SSTT


TTSSS
S

GGG
SSSGGG
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   121........130.........140.........150.........160.........170.........180
 
   109110.........120.........130.........140.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIF
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Template Sequence  LATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLS. PT
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STTS




S

TT


TT

S.
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   181........190.........200.........210.........220.........230....... ..
 
   146...150.........160.........170.........180.........190.........200.....
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Query Sequence  YSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVSG
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Template Sequence  LIGSEVGEAL. . EGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIED. ETVEVAASTSR
Template Known Secondary structure  SSS
G..GG
TTS
SS

GGG

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   240......... 250.........260.........270.........280..... ....290......
 
   206
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Query Sequence  T
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Template Sequence  K
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   297
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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