Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.88%DateTue Jul 30 13:19:15 BST 2013
Rank63Aligned Residues177
% Identity16%Templatec4fomA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:poliovirus receptor-related protein 3; PDBTitle: crystal structure of human nectin-3 full ectodomain (d1-d3)
Resolution3.93 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1920.........30.........40.........50.........60.
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Query Sequence  QFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . .
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Template Sequence  IIVEPHVTAV. . . WGKNVSLKCLIEVNETIT. . . . QISWEKIHGKSSQTVAVHHPQYGFS
Template Known Secondary structure  SB


S
...TTS


B


SS
....SSS

SSS
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   60......... 70.........80....... ..90.........100.........110..
 
   62.......70.........80.........90.........100........
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Query Sequence  . . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . .
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Template Sequence  VQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTV
Template Known Secondary structure 
TTTTTTS

SSSB


S

GGG
TTTB

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   113......120.........130.........140.........150.........160.........170..
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation                                                              
Template Sequence  SLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYK
Template Known Secondary structure 
SS


TT
S
BS




SSB


TTS
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   173......180.........190.........200.........210.........220.........230..
 
   109110.........120.........130......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPVSHPVLTLQHEATNLAVGDKVEFLCE
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Template Conservation                                                              
Template Sequence  LFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCN
Template Known Secondary structure 


GGGTT

TT
SS






B


S
TT

S


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   233......240.........250.........260.........270.........280.........290..
 
   137..140.........150.........160.........170.........180.........190......
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Query Sequence  AHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISEL
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Template Sequence  ADANPPPFKSVWSRLDGQWPDGLLAS. DNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQ.
Template Known Secondary structure  S


BSSS


SS
B
S.TT

S


S


STT.
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   293......300.........310........ .320.........330.........340.........350
 
   197..200....
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Query Sequence  KKFPLVVS
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Template Conservation    
 
   
Template Sequence  KVIYISDP
Template Known Secondary structure 



Template Predicted Secondary structure 
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   351.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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