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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank246Aligned Residues163
% Identity13%Templatec1h8oB_
PDB info PDB header:antibodyChain: B: PDB Molecule:mutant al2 6e7p9g; PDBTitle: three-dimensional structure of anti-ampicillin single chain2 fv fragment.
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . . .
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Template Sequence  SHKFMSTS. . . VGDRVSITCKASQDVGT. . . . . AVAWYQQKPGQSPKLLIYWASTRHTGV
Template Known Secondary structure  S
S
...TT

SS

TT.....

TTS

TTT
TT
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   10....... ..20.........30.... .....40.........50.........60.
 
   61........70.........80.........90.........100.........110.......
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Query Sequence  . . . NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PDRFTGSGSGTDFTLTISNVQSEDLADYFCQQYSSYPLTFGAGTKLELKRVQLQEPG. . .
Template Known Secondary structure 
TTTTSS

GGG
S
SSSS







SSTT
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   62.......70.........80.........90.........100.........110........
 
   118.120.........130.........140.........150........
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKP. . . . . . . . . . . . . . . . . . .
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Template Sequence  . . . . GELVRPGASVKLSCKASGYTFTSYWINWVKQRPGQGLEWIGNIYPSDSYTNYNQKF
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TT



SS
GGGS

SSS
TTTT
GGG
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   140.........150.........160.........170.........180.........190.....
 
   159160.........170.........180.........190.........200
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Query Sequence  . . . . . . . LAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFP
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Template Sequence  KDKATLTVDKSSSTAYMQLSSLTSEDSAVYFCARWGYWGQGTL. . VTVS
Template Known Secondary structure  TTTGGGT
S

GGG
TT


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   196...200.........210.........220.........230........ .240..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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