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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank279Aligned Residues170
% Identity15%Templatec3uzeB_
PDB info PDB header:immune systemChain: B: PDB Molecule:variable domains of murine anti-dengue mab 4e11; PDBTitle: crystal structure of the dengue virus serotype 3 envelope protein2 domain iii in complex with the variable domains of mab 4e11
Resolution2.04 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGASVRLSCTASGFNIKDTY. . . MSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKA
Template Known Secondary structure 
TT

SS
GGGS
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TT


TTTT
GGGTTT
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Query Sequence  NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVL. . .
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Template Sequence  TITADTSSNTAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSALVMTQTPASLAV
Template Known Secondary structure  TTTT
S

GGG

SSS









S
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   70.........80.........90.........100.........110.........120.........
 
   117..120.........130.........140.........150....... ..160....
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Query Sequence  . . . . . . . . TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGK. . . . PLAPSGR
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Template Sequence  SLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRT
Template Known Secondary structure 
TTS
SS

TT

TTS

TTT
TT

TTTT
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   146...150.........160.........170.........180.........190.........200.....
 
   165....170.........180.........190.........200..
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Query Sequence  AASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  DFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK
Template Known Secondary structure  SS

GGG

SSSS

B



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   206...210.........220.........230.........240...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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