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Job DescriptionA1YIY0
Confidence99.88%DateTue Jul 30 13:19:15 BST 2013
Rank65Aligned Residues169
% Identity20%Templatec1l6zA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:biliary glycoprotein c; PDBTitle: crystal structure of murine ceacam1a[1,4]: a coronavirus receptor and2 cell adhesion molecule in the cea family
Resolution3.32 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   24..... 30.........40.........50.........60.........70.
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Query Sequence  ELTEFT. . NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHS. . . . . . . . . .
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Template Sequence  TIEAVPPQVAEDNNVLLLVHNLPLALG. . . . . AFAWYKGNTTAIDKEIARFVPNSNMNFT
Template Known Secondary structure  SSS

TT

S

TT
S.....SS

SGGG
STT


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   3......10.........20......... 30.........40.........50.......
 
   72.......80.........90.........100.........110......
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Query Sequence  . . . . . . . . . . . . . . . VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVL
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Template Sequence  GQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQP. . . . VTQP
Template Known Secondary structure 
SS

SS
TTS

S

GGG
TT








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   58.60.........70.........80.........90.........100......... 110...
 
   117..120.........130.........140.........150.........160.........170......
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Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEW
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Template Sequence  FLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRE
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S
S
TTS




SS
TT



TTTTTT
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GG
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   114.....120.........130.........140.........150.........160.........170...
 
   177..180.........190.........200.
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Query Sequence  STKNYSCEAKNNISREISELKKFPL
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Template Sequence  DAGEYQCEISNPVSVRRSNSIKLDI
Template Known Secondary structure  G
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   174.....180.........190........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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