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Job DescriptionA1YIY0
Confidence99.77%DateTue Jul 30 13:19:15 BST 2013
Rank294Aligned Residues162
% Identity12%Templatec2eysB_
PDB info PDB header:immune systemChain: B: PDB Molecule:nkt15; PDBTitle: a structural basis for selection and cross-species2 reactivity of the semi-invariant nkt cell receptor in3 cd1d/glycolipid recognition
Resolution2.21 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30.........40.........50.........60.
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Query Sequence  NPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . .
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Template Sequence  PRYLVIG. . . TGKKITLECSQTMGHD. . . . . . KMYWYQQDPGMELHLIHYSYGVNSTEKG
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STT


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   8.10.... .....20.........30 .........40.........50........
 
   62.......70.........80.........90.........100.... ...
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Query Sequence  . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLD. . . . . . . IQF
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Template Sequence  DLSSESTVSRIRTEHFPLTLESARPSHTSQYLCASSGLRDRGLYEQYFGPGTRLTVTEDL
Template Known Secondary structure  SS

S


SSTTB

SS

GGG

SSS



S
G
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   5960.........70.........80.........90.........100.........110........
 
   108.110.........120.........130......... 140.........150.........160...
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Query Sequence  WTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSG. . .
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Template Sequence  KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPL
Template Known Secondary structure  GG
B




SBSS
TT
TT
SS
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   121........130.........140.........150.........160.........170.........180
 
   164.....170......... 180.........190..
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Query Sequence  . . . . . . . . . . . . RAASLLASVKAEWSTK. NYSCEAKNNISRE
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Template Sequence  KEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE
Template Known Secondary structure  SSTT
TT

T
TT


B
T
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   181........190.........200.........210.........220..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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