Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.66%DateTue Jul 30 13:19:15 BST 2013
Rank398Aligned Residues167
% Identity14%Templatec2ak4N_
PDB info PDB header:immune systemChain: N: PDB Molecule:sb27 t cell receptor alpha chain; PDBTitle: crystal structure of sb27 tcr in complex with hla-b*3508-2 13mer peptide
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60......
Predicted Secondary structure 















..............
Query SS confidence 













































. . . . . . . . . . . . . .
Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQD. . . . . . . . . . . . . .
Query Conservation 
 
 
      

  


 
     
                    ..............
Alig confidence 







...


































..............
Template Conservation      
 
 ... 
  
 
 
          
 
 
                        
Template Sequence  AQTEISVV. . . EKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGR
Template Known Secondary structure 


...TT




S
SS

TT


TT





BTT
Template Predicted Secondary structure 


...
























Template SS confidence 



























































   6...10... ......20.........30.........40.........50.........60..
 
   67..70.........80.........90.........100.........110........
Predicted Secondary structure  ........























Query SS confidence  . . . . . . . .



















































Query Sequence  . . . . . . . . RSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTL
Query Conservation  ........     
 
  
   
 
 
 
 
 
                           
Alig confidence  ........



















































Template Conservation              

 
  
   
 
 
 
 
              
 
 
          
Template Sequence  YSWNFQKSTSSFNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPA
Template Known Secondary structure  TTTTSS

GGG

SSTTS







SS


Template Predicted Secondary structure 




























Template SS confidence 



























































   62.......70.........80.........90.........100.........110.........120.
 
   119120.........130.........140.........150.........160. ........170......
Predicted Secondary structure 



















..



Query SS confidence 










































. .














Query Sequence  QHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAP. . SGRAASLLASVKAEW
Query Conservation        
  
    
 
            
 
 
         ..      
 
  
   
Alig confidence 



..




































..














Template Conservation      ..          
                                     
 
   
Template Sequence  VYQL. . RDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWS
Template Known Secondary structure  ..


SSSS
S

TT





SSSS



GGGT
Template Predicted Secondary structure 
..

























Template SS confidence 



























































   125... .130.........140.........150.........160.........170.........180..
 
   177..180...... ...190..
Predicted Secondary structure 
..




Query SS confidence 









. .





Query Sequence  STKNYSCEAK. . NNISRE
Query Conservation 
 
 
 
 
 ..
  
  
Alig confidence 









..





Template Conservation      


 
   
     
Template Sequence  NKSDFACANAFNNSIIPE
Template Known Secondary structure 
STT

TTSTTTTS


T
Template Predicted Secondary structure 









Template SS confidence 

















   183......190.........200
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D