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Job DescriptionA1YIY0
Confidence99.65%DateTue Jul 30 13:19:15 BST 2013
Rank400Aligned Residues165
% Identity14%Templatec1fbiH_
PDB info PDB header:complex (antibody/antigen)Chain: H: PDB Molecule:igg1 f9.13.7 fab (heavy chain); PDBTitle: crystal structure of a cross-reaction complex between fab2 f9.13.7 and guinea-fowl lysozyme
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50.........60
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKN. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AELVKPGASVKLSCKASGYTFTSYW. . . MHWVKQGPGQGLEWIGEIDPSDSYPNYNEKFK
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   910.........20.........30... ......40.........50.........60.....
 
   61........70.........80.........90.........100.........110......
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Query Sequence  . . . . NHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVL
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Template Sequence  GKATLTVDKSSSTAYMQLSSLTSEDSAVYYCASLYYYGTSYGVLDYWGQGTSVTVSSAKT
Template Known Secondary structure  TTGGGT
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   66...70.........80.........90.........100.........110.........120.....
 
   117.. 120.........130.........140.........150.........160....
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Query Sequence  TLQ. . . . . HEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGR. . . . . . .
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Template Sequence  TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYT
Template Known Secondary structure  B

B




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   126...130.........140.........150.........160.........170.........180.....
 
   165....170.........180.........190.....
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Query Sequence  . AASLLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  LSSSVTV. PSSPRPSETVTCNVAHPASSTKVD
Template Known Secondary structure  .STTTTTT

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   186...190.. .......200.........210......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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