Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.68%DateTue Jul 30 13:19:15 BST 2013
Rank386Aligned Residues163
% Identity13%Templatec1eo8H_
PDB info PDB header:viral protein/immune systemChain: H: PDB Molecule:antibody (heavy chain); PDBTitle: influenza virus hemagglutinin complexed with a neutralizing antibody
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
Predicted Secondary structure 









............................
Query SS confidence 































. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    

  


 
     
               ............................
Alig confidence 





















...






............................
Template Conservation 
  
  
 
 
   
       ...
 
                              
 
Template Sequence  MKPGPSVKISCKATGYSFSTYF. . . IEWIRQRPGHGLEWIGEILPGSDNTNFNEKFKDRA
Template Known Secondary structure 
SSS
SS
GGGS
...TTTTTTT
GGGTTT
Template Predicted Secondary structure 










...















Template SS confidence 



























































   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90......... 100.........110........
Predicted Secondary structure  ..















.









Query SS confidence  . .





































.


















Query Sequence  . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKK. SGYLDIQFWTPVSHPVLTL
Query Conservation  ..          
 
  
   
 
 
 
 
 
        .                   
Alig confidence  ..





































.


















Template Conservation              
 
  
   
 
 
 
 
                              
Template Sequence  TFTADTPSNTAYMQLSSLTSEDSAVYYCARPTGRLWFSYWGQGTLVTVSAAKTTPPSVYP
Template Known Secondary structure  TTTT
S

GGG


SSGGG




S


B

Template Predicted Secondary structure 



























Template SS confidence 



























































   68.70.........80.........90.........100.........110.........120.......
 
   119120.........130......... 140.........150.........160... ......170.
Predicted Secondary structure 








.











......
Query SS confidence 




















.























. . . . . .







Query Sequence  QHEATNLAVGDKVEFLCEAHQ. GSLPIFYSFYINGEILGKPLAPSG. . . . . . RAASLLAS
Query Conservation        
  
    
 
    .        
 
 
           ......    
 
 
Alig confidence 




















.























......







Template Conservation                                
                        
 
 
Template Sequence  LAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTV
Template Known Secondary structure 


S

TTTTBSS

B

BGGGT

S


TT
Template Predicted Secondary structure 





















Template SS confidence 



























































   124.....130.........140.........150.........160.........170.........180...
 
   172.......180.........190.....
Predicted Secondary structure 







Query SS confidence 























Query Sequence  VKAEWSTKNYSCEAKNNISREISE
Query Conservation   
   
 
 
 
 
 
  
   
 
Alig confidence 























Template Conservation       
 
 


 
 
        
Template Sequence  PSSPRPSETVTCNVAHPASSTKVD
Template Known Secondary structure  SSS
TTS

GGGT
Template Predicted Secondary structure 











Template SS confidence 























   184.....190.........200.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D