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Job DescriptionA1YIY0
Confidence99.95%DateTue Jul 30 13:19:15 BST 2013
Rank3Aligned Residues174
% Identity21%Templatec3jxaA_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:contactin 4; PDBTitle: immunoglobulin domains 1-4 of mouse cntn4
Resolution2.40 Å
Model Dimensions (Å)X:66.431 Y:47.929 Z:33.871

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23......30. ........40.........50.........60........ .70.
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Query Sequence  PELTEFTNS. . . ETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRS. . . . . . . . PHS
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Template Sequence  PVFVQEPSHVMFPLDKVKLSCEVKGNPKP. . . . . HIRWKLNGTDVDIGMDFRYSVVDGSL
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TTSSSSB

BTTB
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   26...30.........40.........50.... .....60.........70.........80
 
   72.......80.........90.........100........
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Query Sequence  VFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLC
Template Known Secondary structure  BSS


STT





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   85....90.........100.........110.........120.........130.........140....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHK
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SS
TT


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TTT

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   145....150.........160.........170.........180.........190.........200....
 
  
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADG
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STTS
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   205....210.........220.........230.........240.........250.........260....
 
   109110.........120..
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPVSHPVLTLQHEA
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Template Conservation                                                              
Template Sequence  KPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIIND
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TT
TTTT
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   265....270.........280.........290.........300.........310.........320....
 
   123......130.........140.........150.........160.........170.........180..
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Query Sequence  TNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYS
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Template Sequence  IHVAMEESVFWECKANGRPK. PTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQ
Template Known Secondary structure  TT


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TT



SSTTSS

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   325....330.........340.... .....350.........360.........370.........380...
 
   183......190.........200...
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Query Sequence  CEAKNNISREISELKKFPLVV
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Template Conservation 
 
 
  
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Template Sequence  CVAENKHGVIFSS. AELSVIA
Template Known Secondary structure  TT.
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   384.....390...... ...400...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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