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Job DescriptionA1YIY0
Confidence99.86%DateTue Jul 30 13:19:15 BST 2013
Rank83Aligned Residues173
% Identity15%Templatec3ejjX_
PDB info PDB header:cytokine/signaling proteinChain: X: PDB Molecule:macrophage colony-stimulating factor 1 receptor; PDBTitle: structure of m-csf bound to the first three domains of fms
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   23...... 30.........40.........50.........60.........70........
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Query Sequence  PELTEFT. . . . NSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVIQDRSPHSVFSAEAK
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Template Sequence  PVIEPSGPELVVEPGETVTLRCVSNGSV. . . . . EWDGPISPYWTLDPESPGSTLTTRNAT
Template Known Secondary structure 
S
SS
TT


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SS

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   21........30.........40........ .50.........60.........70.....
 
   7980.........90.........100........
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Query Sequence  EENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FKNTGTYRCTELESTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSL
Template Known Secondary structure  GGG






SS
SS
STTS

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GGGGGS
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   76...80.........90.........100.........110.........120.........130.....
 
   109110.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPV
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Template Sequence  MREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHP
Template Known Secondary structure  GGG

TT

TTTSS

GGG
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   141........150.........160.........170.........180.........190.........200
 
   112.......120.........130.........140.........150.........160... ..
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Query Sequence  SHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . RA
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Template Sequence  EPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKV
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SSS

SSS
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   201........210.........220.........230.........240.........250.........260
 
   166...170.........180.........190.........200.
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISELKKFPL
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Template Sequence  RALSLNAVDFQDAGIYSCVASNDVGTRTAT. MNFQV
Template Known Secondary structure  SS

SSS

SS
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   261........270.........280.........290 .....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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