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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank143Aligned Residues179
% Identity19%Templatec3umtA_
PDB info PDB header:immune systemChain: A: PDB Molecule:scfv heavy chain and light chain; PDBTitle: scfv12, anti-bcla antibody single chain variable fragment
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60.
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Query Sequence  AEAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . .
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Template Sequence  VQLQQ. . SGLEL. . . . VKPGASVKISCKTSGYTFTEYT. . . MHWVKQSHGKSLEWIGGIN
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TT

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   4.... .10... ......20.........30..... ....40.........50....
 
   62.......70.........80.........90.........100...
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Query Sequence  . . . . . . . . . . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYL
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Template Sequence  PNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFA. YWGQ
Template Known Secondary structure  TTT


GGGTTTGGGT
S

GGG


STT

S
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   55....60.........70.........80.........90.........100......... 110...
 
   104.....110.........120.........130.........140.........150.
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Query Sequence  DIQFWTPVSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYIN. . . . . . . . . . . .
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Template Sequence  GTTVTVSSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYAT
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S
TT

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TT

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TT
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   114.....120.........130.........140.........150.........160.........170...
 
   152.......160.........170.........180.........190.........200..
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Query Sequence  . . . . . GEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  SSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIK
Template Known Secondary structure  T
TTS
TTTT
S

GGG
S
SSSS




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   189190.........200.........210.........220.........230.........240....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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