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Job DescriptionA1YIY0
Confidence99.81%DateTue Jul 30 13:19:15 BST 2013
Rank193Aligned Residues177
% Identity15%Templatec3ux9D_
PDB info PDB header:cytokine/immune systemChain: D: PDB Molecule:scfv antibody; PDBTitle: structural insights into a human anti-ifn antibody exerting2 therapeutic potential for systemic lupus erythematosus
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   18.20.........30.........40.........50.........60.
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Query Sequence  EQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . .
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Template Sequence  VLTQPPSVSGA. . . PGQRVTISCSGSSSNIGSNY. . . VSWYQQLPGTAPKLLIYDNNQRP
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B

S
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TTTTTTS
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TTS

BTTTB

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   5....10..... ....20.........30..... ....40.........50........
 
   62.......70.........80.........90.........100.........110....
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Query Sequence  . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHP
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Template Sequence  SGVPDRFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVL. . . . . E
Template Known Secondary structure  TT

TTTT
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GGG
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   5960.........70.........80.........90.........100.........110.. .
 
   115....120.........130.........140....... ..150
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Query Sequence  VLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYS. . . . . . . . . . . . . . . . . . . . . . . . FYI
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Template Sequence  VQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYA
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TT

SS
GGGS

TT


SSSS

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   136...140.........150.........160.........170.........180.........190.....
 
   151........160... ......170.........180.........190... ......200.....
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Query Sequence  NGEILGKPLAPSG. . RAASLLASVKAEWSTKNYSCEAKNNISREI. . . SELKKFPLVVSG
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Template Sequence  DSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYIDFGDHMDFWGQGTLVTVSSLE
Template Known Secondary structure  GGGTTTTTTT
S

GGG
TTTT



S

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   196...200.........210.........220.........230.........240.........250.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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