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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank270Aligned Residues161
% Identity10%Templatec2xknB_
PDB info PDB header:immune systemChain: B: PDB Molecule:anti-egfr antibody 7a7; PDBTitle: crystal structure of the fab fragment of the anti-egfr antibody 7a7
Resolution1.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPGGSLKLSCAASGFTFSRYA. . . MSWVRQTPEKRLEWVATISSGGSYSYYPDSVKGRF
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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100.........110.........
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Query Sequence  . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  TISRDNVKNTLYLQMSSLRSEDTAMYYCARDSGGFAYWGQGTLVTVSAAKTTPPSVYPL.
Template Known Secondary structure  TTTT
S

GGG
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B

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   6970.........80.........90.........100.........110.........120.......
 
   120.........130.........140.........150.........160... ......170...
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . RAASLLASVK
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Template Sequence  . . . . . APGSSVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS
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BSS

GGGTB
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   128.130.........140.........150.........160.........170.........180..
 
   174.....180.........190.........200..
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Query Sequence  AEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  STWPSQSVTCNVAHPASS. . . TKVDKKIE
Template Known Secondary structure  TTTTTS

GGGT...

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   189190.........200...... ...210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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