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Job DescriptionA1YIY0
Confidence99.82%DateTue Jul 30 13:19:15 BST 2013
Rank182Aligned Residues156
% Identity17%Templatec1wioA_
PDB info PDB header:glycoproteinChain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: structure of t-cell surface glycoprotein cd4, tetragonal2 crystal form
Resolution3.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   26...30.........40.........50.........60....
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Query Sequence  TEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNHVI. . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KVVLGKKGDTVELTCTASQKKSI. . . . . QFHWKNSNQIKILGNQGSFLTKGPSKLNDRAD
Template Known Secondary structure  TTS




TT
SS
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TT

TT
SSTTGGG
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   2.......10.........20.... .....30.........40.........50......
 
   65....70.........80.........90.........100.........110.........
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Query Sequence  . . . . . QDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLTLQ
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Template Sequence  SRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLL. . . . . . . . . . . . . . VFGLTA
Template Known Secondary structure 

TT



S

GGG
TT..............
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   57..60.........70.........80.........90...... ...100..
 
   120.........130.........140.........150.........160.........170.........
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Query Sequence  HEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTK
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Template Sequence  NSDTHLLQGQSLTLTLESPPGSS. PSVQCRSPRGKNIQG. . . . . . GKTLSVSQLELQDSG
Template Known Secondary structure  SS
SSSBS


TT

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SSS
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   103......110.........120..... ....130.........140 .........150.....
 
   180.........190.........200........
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Query Sequence  NYSCEAKNNISREISELKKFPLVVSGTAW
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Template Sequence  TWTCTVLQNQKKVEFK. IDIVVLAFQKAS
Template Known Secondary structure 
TT
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S
S
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   156...160.........170. ........180...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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