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Job DescriptionA1YIY0
Confidence99.78%DateTue Jul 30 13:19:15 BST 2013
Rank277Aligned Residues163
% Identity13%Templatec2ianS_
PDB info PDB header:immune systemChain: S: PDB Molecule:cd4+ t cell receptor e8 alpha chain; PDBTitle: structural basis for recognition of mutant self by a tumor-2 specific, mhc class ii-restricted tcr
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20.........30.........40.........50.........60.
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Query Sequence  AEAQEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . .
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Template Sequence  IQVEQ. . SPPDLILQ. . . EGANSTLRCNFSDSVN. . . . . . NLQWFHQNPWGQLINLFYIP
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..S
S...TT


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S
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   1.... ....10... ......20......... 30.........40.........
 
   62.......70.........80.........90.........100.........110
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Query Sequence  . . . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTP
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Template Conservation         
             
 
  
   
 
 
 
                 
 
   
Template Sequence  SGTKQNGRLSATTVATERYSLLYISSSQTTDSGVYFCAALIQGAQKLVFGQGTRLTINPN
Template Known Secondary structure  STTTTTTSS

GGG
SSS






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   50.........60.........70.........80.........90.........100.........
 
   111........120.........130.........140.........150.........160... .....
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Query Sequence  VSHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . RAASL
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Template Sequence  IQNPDPAV. . . YQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFK
Template Known Secondary structure 
SS


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SSSTT
S

TT





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   110....... ..120.........130.........140.........150.........160......
 
   169170.........180.........190
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Query Sequence  LASVKAEWSTKNYSCEAKNNIS
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Template Sequence  SNSAVAWSNKSDFACANAFNNS
Template Known Secondary structure 
S
SS

STTTSTTS
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   167..170.........180........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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