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Job DescriptionA1YIY0
Confidence99.68%DateTue Jul 30 13:19:15 BST 2013
Rank390Aligned Residues159
% Identity14%Templatec3cxdH_
PDB info PDB header:immune systemChain: H: PDB Molecule:fab fragment of anti-osteopontin antibody 23c3, heavy PDBTitle: crystal structure of anti-osteopontin antibody 23c3 in complex with2 its epitope peptide
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VQPKGSLKISCAASGFTFNIYA. . . MNWVRQAPGKGLEWVARIRSQSNNYTTYYADSVKD
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GGGS
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GGGTT

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   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  RFTISRDDSQSMLYLQMNNLKTEDTAMYYCVRQMGDYWGQGTTLTVSSAVKTP. . . PSVY
Template Known Secondary structure  TGGGT
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GGG
TTTT




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B
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   6970.........80.........90.........100.........110.........120. ....
 
   118.120.........130.........140.... .....150.........160.... .....
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . AASLL
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Template Sequence  PLAPGGGAISNSMVTLGCLVNGYFPEPVTVTWNAGSLGSGVHTFPAVLQSDLYTLSSSVT
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SBSS

GGGT

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   126...130.........140.........150.........160.........170.........180.....
 
   170.........180.........190.....
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Query Sequence  ASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  V. PVSTWPSEAVTCNVAHPASATSVD
Template Known Secondary structure  .TTTTTTS

TTTT
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   186 ...190.........200.........210
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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