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Job DescriptionA1YIY0
Confidence99.83%DateTue Jul 30 13:19:15 BST 2013
Rank130Aligned Residues173
% Identity14%Templatec1ejoL_
PDB info PDB header:immune systemChain: L: PDB Molecule:igg2a monoclonal antibody (light chain); PDBTitle: fab fragment of neutralising monoclonal antibody 4c42 complexed with g-h loop from fmdv.
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60.
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . .
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Template Sequence  SPASLAVS. . . LGQRATISCRASESVDSYG. NSFMHWYQQKPGQPPKLLIYRASNLESGI
Template Known Secondary structure  S
S
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   2007..2010.... .....2020.........2030... ......2040.........2050.........2060..
 
   62.......70.........80.........90.........100.........110.......
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Query Sequence  . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVSHPVLT
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Template Sequence  PARFSGSGSRTDFTLTINPVEADDVATYYCQQSNEDPLTFGAGTKLELKRADAAPTVSIF
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TTTTSS

GGG

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B

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   2063......2070.........2080.........2090.........2100.........2110.........2120..
 
   118.120.........130.........140.... .....150.........160.... .
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . . . . A
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Template Sequence  PPSSE. . QLTSGGASVVCFLNNFYPKDINVRWKIDGSERQNGVLNSWTDQDSKDSTYSMS
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   2123.... ..2130.........2140.........2150.........2160.........2170.........2180
 
   166...170.........180.........190.........200..
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Query Sequence  ASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLV
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Template Sequence  STLTLTKDEYERHNSYTCEATHKTST. . . SPIVKSFN
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   2181........2190.........2200...... ...2210....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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