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Job DescriptionA1YIY0
Confidence99.79%DateTue Jul 30 13:19:15 BST 2013
Rank239Aligned Residues169
% Identity18%Templatec3gkzA_
PDB info PDB header:immune systemChain: A: PDB Molecule:anti-methamphetamine single chain fv; PDBTitle: crystal structures of a therapeutic single chain antibody in2 complex methamphetamine
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
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Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  VKPSQTLSLTCSVTGDSVTSGY. . . WSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRIS
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   20.........30.........40. ........50.........60.........70......
 
   62.......70.........80.........90.........100....... ..110.......
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Query Sequence  . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQF. . . WTPVSHPVLT
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Template Sequence  ITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSSGGGGSQIVLT
Template Known Secondary structure  GGGT
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GGG

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   77..80.........90.........100.........110.........120.........130......
 
   118.120.........130.........140.........150 .........
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Query Sequence  LQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYI. . . . . . . . . . . . . . . . . . NGEILGKPL
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Template Sequence  QSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSG
Template Known Secondary structure 
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   146...150.........160.........170.........180.........190.........200.....
 
   160.........170.........180.........190.... .....200..
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Query Sequence  APSGRAASLLASVKAEWSTKNYSCEAKNNISREIS. ELKKFPLV
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Template Sequence  SGSGTSYSLTISSMEAEDAASYFC. HQWSSFPFTFGSGTKLEIK
Template Known Secondary structure  TTSS

GGG
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   206...210.........220......... 230.........240........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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