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Job DescriptionA1YIY0
Confidence99.84%DateTue Jul 30 13:19:15 BST 2013
Rank108Aligned Residues169
% Identity13%Templatec3mlwL_
PDB info PDB header:immune systemChain: L: PDB Molecule:human monoclonal anti-hiv-1 gp120 v3 antibody 1006-15d fab PDBTitle: crystal structure of anti-hiv-1 v3 fab 1006-15d in complex with an mn2 v3 peptide
Resolution2.70 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   21........30.........40.........50.........60..
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Query Sequence  PNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYTFYKNNH. . . . . . . . . . . . . . . . . .
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Template Sequence  QPPSASGT. . . PGQRVTISCSGNSSNIENNY. . . VYWYQQLPGSTPKLLIFRDDQRPSGV
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S
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BTTTB

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   6...10... ......20.........30... ......40.........50.........
 
   63......70.........80.........90.........100....... ..110....
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Query Sequence  . . . . . VIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQF. . . WTPVSHP
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Template Sequence  PDRFSGSKSGTSASLAISGLRSEDEADYYCASWDDSRGGPDYVFGTGTKVTVLGQPKANP
Template Known Secondary structure 
TTTTS

GGG

SSSS
B


SS

B

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   5960.........70.........80.........90.........100.........110........
 
   115....120.........130.........140.... .....150.........160....
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Query Sequence  VLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSGR. . . . . . . . .
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Template Sequence  TVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYA
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TT
BSS

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   114.....120.........130.........140.........150.........160.........170...
 
   165....170.........180.........190.....
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Query Sequence  . AASLLASVKAEWSTKNYSCEAKNNISREISE
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Template Sequence  ASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT
Template Known Secondary structure 
SS
TT
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   174.....180.........190.........200.....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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