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Job DescriptionA1YIY0
Confidence99.81%DateTue Jul 30 13:19:15 BST 2013
Rank188Aligned Residues166
% Identity12%Templatec3to4D_
PDB info PDB header:immune systemChain: D: PDB Molecule:nkt vbeta2 (mouse variable domain, human constant domain); PDBTitle: structure of mouse valpha14vbeta2-mousecd1d-alpha-galactosylceramide
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   27..30.........40.........50....... ..60...
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Query Sequence  EFTNSETMDVILKCTIKVDPKNPTLQLFYTF. . . . . . . . . . . . . . . . . . . . . . . YKNNHV
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Template Sequence  WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLAT
Template Known Secondary structure  SS


S
TT


TT


STT
TT
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   10.........20.........30.........40.........50.........60.........
 
   64.....70.........80.........90.........100.... .....110........
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Query Sequence  IQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLD. . . . . IQFWTPVSHPVLTL
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Template Sequence  RVTDTELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVF
Template Known Secondary structure 

SSS

S
SS

S

STT




S
STT
B

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   71........80.........90.........100.........110.........120.........130
 
   119120.........130.........140.... .....150.........160...
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Query Sequence  QHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . . . . . . . . .
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Template Sequence  EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRY
Template Known Secondary structure 


SBSS
TT
TT
SS
SSTT
TT

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   132.......140.........150.........160.........170.........180.........190.
 
   164.....170......... 180.........190..
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Query Sequence  . RAASLLASVKAEWSTK. NYSCEAKNNISRE
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Template Sequence  ALSSRLRVSATFWQNPRNHFRCQVQFYGLSE
Template Known Secondary structure  T
TT


B
T
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   192.......200.........210.........220..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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