Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.93%DateTue Jul 30 13:19:15 BST 2013
Rank16Aligned Residues176
% Identity15%Templatec3lafA_
PDB info PDB header:apoptosisChain: A: PDB Molecule:deleted in colorectal cancer; PDBTitle: structure of dcc, a netrin-1 receptor
Resolution2.40 Å
Model Dimensions (Å)X:60.251 Y:47.301 Z:41.371

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   22.......30. ........40..... ....50.........60.........70
Predicted Secondary structure 




....



.









......
Query SS confidence 









. . . .













.
























. . . . . .
Query Sequence  NPELTEFTNS. . . . ETMDVILKCTIKVD. PKNPTLQLFYTFYKNNHVIQDRSPH. . . . . .
Query Conservation   
 
      ....

  


 
     .
                        ......
Alig confidence 









....













.


.....
















......
Template Conservation     
   
    
  
  
 
 
   
  
 
..... 
 
 
 
  
            
Template Sequence  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVP. . . . . VIKWKKDGLILALGMDDRKQQLP
Template Known Secondary structure  SS




TT




TT


.....TT

TTS
TT
T
Template Predicted Secondary structure 














.....









Template SS confidence 



























































   1........10.........20.........30.. .......40.........50.....
 
   71........80.........90.........100........
Predicted Secondary structure  .......















...............
Query SS confidence  . . . . . . .





































. . . . . . . . . . . . . . .
Query Sequence  . . . . . . . SVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFW. . . . . . . . . . . . . . .
Query Conservation  ....... 
 
  
   
 
 
 
 
 
                 ...............
Alig confidence  .......





































...............
Template Conservation   
      
 
      
 
 
 
 
 
                                
Template Sequence  NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFM
Template Known Secondary structure  TS

S


BTTB
SS

GGG








S



T
Template Predicted Secondary structure 



































Template SS confidence 



























































   56...60.........70.........80.........90.........100.........110.....
 
  
Predicted Secondary structure  ............................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                             
                
Template Sequence  GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCS
Template Known Secondary structure  TS




SS

SSSB



TT

S
TTS

S

GGG
Template Predicted Secondary structure 



























Template SS confidence 



























































   116...120.........130.........140.........150.........160.........170.....
 
  
Predicted Secondary structure  ............................................................
Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ............................................................
Template Conservation                                               
              
Template Sequence  ARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTW
Template Known Secondary structure 
SS


B












TTS


S

Template Predicted Secondary structure 









































Template SS confidence 



























































   176...180.........190.........200.........210.........220.........230.....
 
   109110......
Predicted Secondary structure  ....................................................



Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .







Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPVSHPVL
Query Conservation  ....................................................        
Alig confidence  ....................................................







Template Conservation                         
                                    
Template Sequence  LRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWF
Template Known Secondary structure  TT


SSSSTTT
S

GGG
TT
Template Predicted Secondary structure 




































Template SS confidence 



























































   236...240.........250.........260.........270.........280.........290.....
 
   117..120.........130.........140.........150.........160... ......170.....
Predicted Secondary structure 




















.


Query SS confidence 














































.











Query Sequence  TLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. RAASLLASVKAE
Query Conservation          
  
    
 
            
 
 
           .    
 
  
  
Alig confidence 

























.



















.











Template Conservation             
    
 
   
 
 .
 
 
 


  
             
 
  
  
Template Sequence  LNHPSNLYAYESMDIEFECAVSGKPV. PTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVK
Template Known Secondary structure 





TT



S
.
TT


SSSTTTSS

G
Template Predicted Secondary structure 









.













Template SS confidence 



























































   296...300.........310.........320. ........330.........340.........350....
 
   176...180.........190.........200....
Predicted Secondary structure 






Query SS confidence 




























Query Sequence  WSTKNYSCEAKNNISREISELKKFPLVVS
Query Conservation   
 
 
 
 
 
  
   
    
 
   
Alig confidence 



















.







Template Conservation   
 
 
 
 
 
  
    
.  
 
  
Template Sequence  SDEGFYQCVAENEAGNAQSS. AQLIVPKP
Template Known Secondary structure  GG
TT.



Template Predicted Secondary structure 


.

Template SS confidence 




























   355....360.........370.... .....380..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D