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Job DescriptionA1YIY0
Confidence99.67%DateTue Jul 30 13:19:15 BST 2013
Rank395Aligned Residues171
% Identity12%Templatec2oqjB_
PDB info PDB header:immune systemChain: B: PDB Molecule:fab 2g12 heavy chain; PDBTitle: crystal structure analysis of fab 2g12 in complex with peptide 2g12.1
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   28.30.........40.........50.........
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Query Sequence  FTNSETMDVILKCTIKVDPKNPTLQLFYTFYK. . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GLVKAGGSLILSCGVSNFRISAHT. . . MNWVRRVPGGGLEWVASISTSSTYRDYADAVKG
Template Known Secondary structure  TT

SS
GGGS
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TTS

GGGS

TTTTT
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   10.........20.........30... ......40.........50.........60......
 
   60.........70.........80.........90.........100 .........110.
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Query Sequence  . . NNHVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKS. . . . . . GYLDIQFWTPV
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Template Conservation 
             
 
  
   
 
 
 
 
                            
Template Sequence  RFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAST
Template Known Secondary structure  TTTTT
S

GGG


SS

SS




S
S
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   66...70.........80.........90.........100.........110.........120.....
 
   112.......120.........130.........140.........150.........160...
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Query Sequence  SHPVLTLQHEATNLAVGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSG. . . . . . . .
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Template Sequence  KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLY
Template Known Secondary structure  B




SSSS
SSBSS

GGGTB
TT



TTS
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   117..120.........130.........140.........150.........160.........170......
 
   164.....170.........180.........190.........200....
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Query Sequence  RAASLLASVKAEWSTKNYSCEAKNNISREISELKKFPLVVS
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Template Sequence  SLSSVVTVPSSSLGTQTYICNVNHKPSN. . . TKVDKKVEPK
Template Known Secondary structure  GGGTTT

GGGT...


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   186...190.........200.........210... ......220...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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