Return to main results Retrieve Phyre Job Id

Job DescriptionA1YIY0
Confidence99.72%DateTue Jul 30 13:19:15 BST 2013
Rank356Aligned Residues163
% Identity12%Templatec4jb9H_
PDB info PDB header:viral protein/immune systemChain: H: PDB Molecule:antibody vrc06 heavy chain; PDBTitle: crystal structure of antibody vrc06 in complex with hiv-1 gp120 core
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   30.........40.........50.........60.
Predicted Secondary structure 









............................
Query SS confidence 































. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  NSETMDVILKCTIKVDPKNPTLQLFYTFYKNN. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation    

  


 
     
               ............................
Alig confidence 





















...






............................
Template Conservation 
  
  
 
 
           ...
 
                                
Template Sequence  RKPGSSMKISCATSGYNFRDFS. . . IHWVRFNRRYGFEWIGWIKPMWGAVNYARQLQGRV
Template Known Secondary structure 
TT
SS
GGGS
...TTTTTTT
GGGTTT
Template Predicted Secondary structure 










...














Template SS confidence 



























































   12.......20.........30... ......40.........50.........60........
 
   62.......70.........80.........90.........100.........110..
Predicted Secondary structure  .........

























Query SS confidence  . . . . . . . . .


















































Query Sequence  . . . . . . . . . HVIQDRSPHSVFSAEAKEENSGLYQCMVDTEDGLIQKKSGYLDIQFWTPVS
Query Conservation  .........          
 
  
   
 
 
 
 
 
                     
Alig confidence  .........


















































Template Conservation                     
 
  
   
 
 
 
 
                       
Template Sequence  SMSRLFSQDLYYPDRGTAYLEFSGLTSADTADYFCVRRGSSCPHCGDFHFEHWGQGTAVV
Template Known Secondary structure 


SSS
S
S

STT

SS
SSS
TT



Template Predicted Secondary structure 

















Template SS confidence 



























































   68.70.........80.........90.........100.........110.........120.......
 
   113......120.........130.........140.... .....150.........160... .
Predicted Secondary structure 













.






.......
Query SS confidence 































.


















. . . . . . .
Query Sequence  HPVLTLQHEATNLAVGDKVEFLCEAHQGSLPI. FYSFYINGEILGKPLAPSG. . . . . . . R
Query Conservation              
  
    
 
         .   
 
 
           ....... 
Alig confidence 































.


















.......
Template Conservation                        
             
                   
   
Template Sequence  VSAASTKGPSVFPLAPSSKALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYS
Template Known Secondary structure 
S


B







BSS

B

BTTTTB
TT



TTS
Template Predicted Secondary structure 























Template SS confidence 



























































   111........120.........130.........140.........150.........160.........170
 
   165....170.........180.........190.....
Predicted Secondary structure 







Query SS confidence 






























Query Sequence  AASLLASVKAEWSTKNYSCEAKNNISREISE
Query Conservation     
 
  
   
 
 
 
 
 
  
   
 
Alig confidence 






























Template Conservation    
 
 
         


 
 
        
Template Sequence  LSSVVTVPSSSLGTQTYICNVNHKPSNTKVD
Template Known Secondary structure 


TTSTTT



TTTT

Template Predicted Secondary structure 











Template SS confidence 






























   178.180.........190.........200........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D