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Job DescriptionA1YIY0
Confidence99.81%DateTue Jul 30 13:19:15 BST 2013
Rank183Aligned Residues185
% Identity15%Templatec3s97C_
PDB info PDB header:cell adhesionChain: C: PDB Molecule:contactin-1; PDBTitle: ptprz cntn1 complex
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40.........50...... ...60.........70
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Query Sequence  QEQFPNPELTEFTNSETMDVILKCTIKVDPKNPTLQLFYT. . . . . . FYKNNHVIQDRSPH
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Template Sequence  LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG
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TT






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B


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TTT
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   135....140.........150.........160.........170.........180.........190....
 
   71........80.........90....... ..100.........110.........120......
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Query Sequence  SVFSAEAKEENSGLYQCMVDTEDGLIQ. . . . KKSGYLDIQFWTPVSHPVLTLQHEATNLA
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Template Conservation   
                                                          
Template Sequence  NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYAL
Template Known Secondary structure 
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GGG
GGGT




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   195....200.........210.........220.........230.........240.........250....
 
   127..130.........140.........150.........160.........170.........180......
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Query Sequence  VGDKVEFLCEAHQGSLPIFYSFYINGEILGKPLAPSGRAASLLASVKAEWSTKNYSCEAK
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Template Sequence  MGQNVTLECFALGNPV. PDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAE
Template Known Secondary structure  TT

S
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TTB


TT
TTTT
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   255....260.........270 .........280.........290.........300.........310...
 
   187..190.........200...
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Query Sequence  NNISREISELKKFPLVV
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Template Conservation 
  
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Template Sequence  NIRGKDKHQ. ARIYVQA
Template Known Secondary structure  TT.
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   314.....320.. .......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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