Phyre 2 alignment of Q8NBR0 with d1ynjd1

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Job Description | Q8NBR0
Confidence | 4.31% | Date | Wed Jun 6 09:32:45 BST 2012
Rank | 40 | Aligned Residues | 28
% Identity | 21% | Template | d1ynjd1
SCOP info | beta and beta-prime subunits of DNA dependent RNA-polymerase | beta and beta-prime subunits of DNA dependent RNA-polymerase | RNA-polymerase beta-prime
Resolution | 3.20

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 141 | . | . | . | . | . | . | . | . | 150 | . | . |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | A | W | I | Y | C | E | S | L | S | G | P | . | . | . | . | . | . | . | . | A | P | S | E | P | T | P | G | R | G | R | L | C | R | R | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | D | G | L | F | D | E | R | I | F | G | P | I | K | D | Y | E | C | A | C | G | K | Y | K | R | Q | R | F | E | G | K | V | C | E | R | C
Template Known Secondary structure |  | S | S | S | T | T |  | T | T | T | S |  |  | S | S | S | S | S |  | S | S |  |  |  |  |  | S | S | S |  |  |  |  |  | S | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 41 | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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