Phyre 2 alignment of Q8NBR0 with d1xmec1

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Job Description | Q8NBR0
Confidence | 2.43% | Date | Wed Jun 6 09:32:45 BST 2012
Rank | 98 | Aligned Residues | 23
% Identity | 35% | Template | d1xmec1
SCOP info | Single transmembrane helix | Bacterial ba3 type cytochrome c oxidase subunit IIa | Bacterial ba3 type cytochrome c oxidase subunit IIa
Resolution | 2.30

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 315 | . | . | . | . | 320 | . | . | . |  | . | . | . | . | . | . | 330 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | M | A | L | T | F | L | L | V | L | . | L | T | L | A | T | L | C | T | R | L | H | R | N | F
Query Conservation |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | A | L | A | V | I | L | V | L | T | L | T | I | L | V | F | W | L | G | V | Y | A | V | F
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 7 | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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