14/06/2012 02:20:46 : INFO  : Run start: Thu Jun 14 02:20:46 BST 2012
14/06/2012 02:20:46 : INFO  : Initialised job
14/06/2012 02:20:46 : INFO  : Initialised job:
Sequence
>batch____
MAPPPPSPQLLLLAALARLLGPSEVMAGPAEEAGAHCPESLWPLPPQVSPRVTYTRVSPG
QAEDVTFLYHPCAHPWLKLQLALLAYACMANPSLTPDFSLTQDRPLVLTAWGLALEMAWV
EPAWAAHWLMRRRRRKQRKKKAWIYCESLSGPAPSEPTPGRGRLCRRGCVQALALAFALR
SWRPPGTEVTSQGPRQPSSSGAKRRRLRAALGPQPTRSALRFPSASPGSLKAKQSMAGIP
GRESNAPSVPTVSLLPGAPGGNASSRTEAQVPNGQGSPGGCVCSSQASPAPRAAAPPRAA
RGPTPRTEEAAWAAMALTFLLVLLTLATLCTRLHRNFRRGESIYWGPTADSQDTVAAVLK
RRLLQPSRRVKRSRRRPLLPPTPDSGPEGESSE

14/06/2012 02:20:46 : INFO  : Checked sequence
14/06/2012 02:20:46 : INFO  : Finding homologues with PSI-BLAST
14/06/2012 02:20:46 : INFO  : PSI-BLAST 3 iterations
14/06/2012 02:33:25 : INFO  : PSI-BLAST 5 iterations
14/06/2012 02:44:26 : INFO  : Finished PSI-BLAST
14/06/2012 02:44:26 : INFO  : Running Buildali to generate a3m file
14/06/2012 02:46:52 : INFO  : Converting to HMM
14/06/2012 02:46:53 : INFO  : Calibrating HMM
14/06/2012 02:47:01 : INFO  : Searching HMM database
14/06/2012 02:57:10 : INFO  : Finished buildali
14/06/2012 02:57:10 : INFO  : Predicting secondary structure
14/06/2012 02:57:10 : INFO  : Predicted secondary structure (PSI-Pred)
14/06/2012 02:57:11 : INFO  : Predicting Disordered regions
14/06/2012 02:57:11 : INFO  : Predicted Disorder (Disopred)
14/06/2012 02:57:11 : INFO  : Running memsat_svm check
14/06/2012 02:57:31 : INFO  : Globular protein
14/06/2012 02:57:31 : INFO  : Predicted Transmembrane (memsat_svm) ID 'cf4e8fe59ea7199b'
14/06/2012 02:57:31 : INFO  : Initialising fold library search
14/06/2012 02:57:31 : INFO  : Initialised search input
14/06/2012 02:57:31 : INFO  : Building Ensemble models
14/06/2012 02:57:31 : INFO  : Building hh.d1k3ra2.model.1.pdb
14/06/2012 02:57:32 : INFO  : Building hh.c1x93B_.model.2.pdb
14/06/2012 02:57:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cf4e8fe59ea7199b/hh.c1x93B_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cf4e8fe59ea7199b/c1x93B_.3.pdb
14/06/2012 02:57:32 : INFO  : Building hh.d2ok5a4.model.3.pdb
14/06/2012 02:57:32 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/cf4e8fe59ea7199b/hh.d2ok5a4.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/cf4e8fe59ea7199b/d2ok5a4.4.pdb
14/06/2012 02:57:33 : INFO  : Building d1k3ra2.1.pdb
14/06/2012 02:57:33 : INFO  : Building c1k3rA_.2.pdb
14/06/2012 02:57:33 : INFO  : Building c1x93B_.3.pdb
14/06/2012 02:57:34 : INFO  : Building d2ok5a4.4.pdb
14/06/2012 02:57:34 : INFO  : Building d1x93a1.5.pdb
14/06/2012 02:57:34 : INFO  : Building c2nrzB_.6.pdb
14/06/2012 02:57:35 : INFO  : Building c2fwtA_.7.pdb
14/06/2012 02:57:35 : INFO  : Building c2nrrA_.8.pdb
14/06/2012 02:57:35 : INFO  : Building c3ml6D_.9.pdb
14/06/2012 02:57:36 : INFO  : Building c3eopB_.10.pdb
14/06/2012 02:57:37 : INFO  : Building d2gbsa1.11.pdb
14/06/2012 02:57:37 : INFO  : Building d1zcea1.12.pdb
14/06/2012 02:57:38 : INFO  : Building d2g2xa1.13.pdb
14/06/2012 02:57:38 : INFO  : Building d2ar1a1.14.pdb
14/06/2012 02:57:39 : INFO  : Building d2evea1.15.pdb
14/06/2012 02:57:39 : INFO  : Building d1q90n_.16.pdb
14/06/2012 02:57:40 : INFO  : Building c3c65A_.17.pdb
14/06/2012 02:57:40 : INFO  : Building d1y5ia1.18.pdb
14/06/2012 02:57:41 : INFO  : Building c2jy0A_.19.pdb
14/06/2012 02:57:41 : INFO  : Building c4a8xB_.20.pdb
14/06/2012 02:57:43 : INFO  : Finished HH model building
14/06/2012 02:57:43 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
14/06/2012 02:57:50 : INFO  : html domain output complete ID 'cf4e8fe59ea7199b'
14/06/2012 03:02:05 : INFO  : Run end  : Thu Jun 14 03:02:05 BST 2012
