Phyre 2 alignment of Q8NBR0 with c2e5nA_

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Job Description | Q8NBR0
Confidence | 3.44% | Date | Wed Jun 6 09:32:45 BST 2012
Rank | 53 | Aligned Residues | 27
% Identity | 22% | Template | c2e5nA_
PDB info | PDB header:transcription | Chain: A: PDB Molecule:rna polymerase ii elongation factor ell2; | PDBTitle: solution structure of the ell_n2 domain of target of rna2 polymerase ii elongation factor ell2
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 333 | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . |  | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | L | H | R | N | F | R | R | G | E | S | I | Y | W | G | P | . | T | A | D | S | Q | D | T | V | A | A | V | L | K | R | R | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | F | K | E | L | Q | R | . | . | . | . | D | W | P | G | Y | S | E | I | D | R | R | S | L | E | S | V | L | S | R | K | L
Template Known Secondary structure |  |  |  |  |  | S |  | T | . | . | . | . | T |  | T | T |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 72 | . | . | . | . | . | . |  |  |  |  | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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