Phyre 2 alignment of Q8NBR0 with c2jy0A_

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Job Description | Q8NBR0
Confidence | 14.62% | Date | Wed Jun 6 09:32:45 BST 2012
Rank | 19 | Aligned Residues | 20
% Identity | 55% | Template | c2jy0A_
PDB info | PDB header:membrane protein, viral protein | Chain: A: PDB Molecule:protease ns2-3; | PDBTitle: solution nmr structure of hcv ns2 protein, membrane segment2 (1-27)
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 308 | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | .
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Query Sequence |  | E | E | A | A | W | A | A | M | A | L | T | F | L | L | V | L | L | T | L | A
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Template Sequence |  | E | M | A | A | S | A | G | G | A | V | F | V | G | L | V | L | L | T | L | S
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Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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