Return to main results Retrieve Phyre Job Id

Job DescriptionP62993
Confidence92.11%DateFri May 25 09:45:29 BST 2012
Rank249Aligned Residues99
% Identity21%Templatec1ka6A_
PDB info PDB header:immune systemChain: A: PDB Molecule:sh2 domain protein 1a; PDBTitle: sap/sh2d1a bound to peptide n-py
ResolutionUNK

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   57..60.........70.........80.........90.........100.........110.........120 .........130
Predicted Secondary structure 




















































......









Query SS confidence 































































. . . . . .









Query Sequence  PHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFL. . . . . . WVVKFNSLNE
Query Conservation                                                  
               ......          
Alig confidence 































































......









Template Conservation     



 


  

 

      
 



 
        


     
 
  
                    
 

  
Template Sequence  AVAVYHGKISRETGEKLLLATGLDGSYLLRDSESVPGVYCLCVLYHGYIYTYRVSQTETGSWSAETAPGVHKRYFRKIKN
Template Known Secondary structure 

SSB

S



TT

SSSTT
SSS

TTS

STTS


SS
Template Predicted Secondary structure 








































Template SS confidence 















































































   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   131........140.........150.....
Predicted Secondary structure 
























Query SS confidence 
























Query Sequence  LVDYHRSTSVSRNQQIFLRDIEQVP
Query Conservation                           
Alig confidence 
























Template Conservation 

  
      
   
  

 
 
 
Template Sequence  LISAFQKPDQGIVIPLQYPVEKKSS
Template Known Secondary structure  TTSS
SSSSS


SB

SS

Template Predicted Secondary structure 















Template SS confidence 
























   83......90.........100.......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions