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Job DescriptionP62993
Confidence93.62%DateFri May 25 09:45:29 BST 2012
Rank242Aligned Residues192
% Identity11%Templatec1m9sA_
PDB info PDB header:signaling proteinChain: A: PDB Molecule:internalin b; PDBTitle: crystal structure of internalin b (inlb), a listeria2 monocytogenes virulence protein containing sh3-like3 domains.
Resolution2.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30..... ....40.........50.........60.........70.........80.........90....
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Query Sequence  LSFKRGDILKVLNEECDQN. . WYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGD
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Template Sequence  LASHRCKALTVDREARNGGKLWYRL. . . KNIGWTKAENLSLDRYDKMEYDKGVTAYARVRNASGNSVWTKPYNTAGAKHV
Template Known Secondary structure  S
TTTTS


B




BTTB
B...TTS
TTTS
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S





S

TT
BSSSSSSTT


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   427..430.........440.........450. ........460.........470.........480.........490.........500...
 
   95....100.........110.........120......... 130.........140.........150.........160.........170.
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Query Sequence  FSLSVKFGNDVQHFKVLRDGAGKYFLWVVKFNSLN. . . ELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQE
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Template Sequence  NKLSVYQGKNMRILREAKTPITTWYQFSIGGKVIGWVDTRALNTFYKQSMEKPTRLTRYVSANKAGESYYKVPVADNPVK
Template Known Secondary structure  GGGG
SS




SS
TTTTTGGG

TTTTTSSSSS

GGG
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   504.....510.........520.........530.........540.........550.........560.........570.........580...
 
   172.......180........ .190........ .200.........210.
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Query Sequence  DGELGFRRGDFIHVMDN. . . SDPNWWKGAC. HGQTGMFPRNYVT
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Template Sequence  RGTLAKYKNQKLIVDCQATIEGQLWYRIRTSSTFIGWTKAANLR
Template Known Secondary structure  GGGSTT

TT
SSSGGG
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   584.....590.........600.........610.........620.......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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