 |
Job Description | P16333 | Confidence | 99.63% | Date | Sat Jun 16 10:34:35 BST 2012 |
Rank | 164 | Aligned Residues | 88 |
% Identity | 22% | Template | c2yupA_ |
PDB info |
PDB header:cell adhesion | Chain: A: PDB Molecule:vinexin; |
PDBTitle: solution structure of the second sh3 domain of human vinexin
|
Resolution | UNK |
|
 |
  |   |
177 | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | K | L | A | A | V | V | N | N | L | N | T | G | Q | V | L | H | V | V | Q | A | L | Y | P | F | S | S | S | N | D | E | E | L | N | F | E | K | G | D | V | M | D | V | I | E | K | P | E | N | D | P | E | W | W | K | C | R | K | I | N | G | M | V | G | L | V | P | K | N | Y | V | T | V | M | Q | N | N | P | L | T |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|   |   |   |   |   |   |   |   |
|
|   |   |   |   |
|   |   |
|   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|
|
|
|   |   |   |   |   |   |
|
|
|   |   |   |
|
|   |
|   |
|
|   |   | . |   |   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |
Template Sequence |   |
S | S | G | S | S | G | K | P | P | T | Y | Q | V | L | E | Y | G | E | A | V | A | Q | Y | T | F | K | G | D | L | E | V | E | L | S | F | R | K | G | E | H | I | C | L | I | R | K | . |
V | N | E | N | W | Y | E | G | R | I | T | G | T | G | R | Q | G | I | F | P | A | S | Y | V | Q | V | S | R | E | P | R | L | R |
Template Known Secondary structure |   |
| S | S |
|
|
| S |
| S |
|
|
| G | G | G | S |  |  |  |  |  |
| S |
|
|
|
|
| S | S | S | B |
|
|
|
| T | T |
|  |  |  |  | S | S |
| . |
|
| S | S |  |  |  |  |  |
| T | T | T |
|
|  |  |  |  |  | G | G | G |  |  |  |  |  |
|
|
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  | . |
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | |
. | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 |
  |
  |   |
257 | . | . | 260 | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
S | G | L | E | P | S | P | P | Q |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |
|
Template Sequence |   |
L | C | D | D | S | G | P | S | S |
Template Known Secondary structure |   |
|
|
|
| S | S |
|
|
|
Template Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
81 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|