Phyre 2 Results for Q8IXH6

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Email | l.a.kelley@imperial.ac.uk
Description | Q8IXH6
Date | Thu Apr 26 09:34:36 BST 2012
Unique Job ID | 544235acab21f8f4

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c3npeA_
Top template information
PDB header:oxidoreductase Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic; PDBTitle: structure of vp14 in complex with oxygen
Confidence and coverage
Confidence: | 36.6% | Coverage: | 9%
19 residues ( 9% of your sequence) have been modelled with 36.6% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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Warning: 57% of your sequence is predicted disordered. Disordered regions cannot be meaningfully predicted.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | F | Q | R | L | S | S | L | F | F | S | T | P | S | P | P | E | D | P | D | C | P | R | A | F | V | S | E | E | D | E | V | D | G | W | L | I | I | D | L | P | D | S | Y | A | A | P | P | S | P | G | A | A | P | A | P | A | G | R | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | P | P | A | P | S | L | M | D | E | S | W | F | V | T | P | P | A | C | F | T | A | E | G | P | G | L | G | P | A | R | L | Q | S | S | P | L | E | D | L | L | I | E | H | P | S | M | S | V | Y | V | T | G | S | T | I | V | L | E | P | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | S | P | S | P | L | P | D | A | A | L | P | D | G | D | L | S | E | G | E | L | T | P | A | R | R | E | P | R | A | A | R | H | A | A | P | L | P | A | R | A | A | L | L | E | K | A | G | Q | V | R | R | L | Q | R | A | R | Q | R | A | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220
Sequence |  | R | H | A | L | S | A | K | A | V | Q | R | Q | N | R | A | R | E | S | R | P | R | R | S | K | N | Q | S | S | F | I | Y | Q | P | C | Q | R | Q | F | N | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  | ? |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3npeA_ |

### PDB 3npe chain A

Region: 27 - 45
Aligned: 19
Modelled: 19
Confidence: 36.6%
Identity: 26%
PDB header:oxidoreductase
Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic;
PDBTitle: structure of vp14 in complex with oxygen

Phyre2
2 |
| c3r8kB_ |

### PDB 3r8k chain B

Region: 1 - 34
Aligned: 34
Modelled: 34
Confidence: 34.5%
Identity: 15%
PDB header:apoptosis
Chain: B: PDB Molecule:heme-binding protein 2;
PDBTitle: crystal structure of human soul protein (hexagonal form)

Phyre2
3 |
| c3fsnA_ |

### PDB 3fsn chain A

Region: 22 - 40
Aligned: 17
Modelled: 19
Confidence: 30.4%
Identity: 18%
PDB header:isomerase
Chain: A: PDB Molecule:retinal pigment epithelium-specific 65 kda protein;
PDBTitle: crystal structure of rpe65 at 2.14 angstrom resolution

Phyre2
4 |
| c2biwC_ |

### PDB 2biw chain C

Region: 29 - 45
Aligned: 17
Modelled: 17
Confidence: 29.0%
Identity: 29%
PDB header:oxidoreductase
Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase;
PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme

Phyre2
5 |
| d2gova1 |

### PDB 2gov chain A domain 1

Region: 1 - 34
Aligned: 34
Modelled: 34
Confidence: 28.4%
Identity: 3%
Fold: Probable bacterial effector-binding domain
Superfamily: Probable bacterial effector-binding domain
Family: SOUL heme-binding protein

Phyre2
6 |
| d2o5aa1 |

### PDB 2o5a chain A domain 1

Region: 28 - 42
Aligned: 15
Modelled: 15
Confidence: 21.2%
Identity: 47%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Iojap/YbeB-like

Phyre2
7 |
| d1sgva2 |

### PDB 1sgv chain A domain 2

Region: 32 - 46
Aligned: 15
Modelled: 15
Confidence: 20.4%
Identity: 27%
Fold: Pseudouridine synthase
Superfamily: Pseudouridine synthase
Family: Pseudouridine synthase II TruB

Phyre2
8 |
| c3upsA_ |

### PDB 3ups chain A

Region: 28 - 42
Aligned: 15
Modelled: 15
Confidence: 20.2%
Identity: 27%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:iojap-like protein;
PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis

Phyre2
9 |
| d2id1a1 |

### PDB 2id1 chain A domain 1

Region: 28 - 42
Aligned: 15
Modelled: 15
Confidence: 19.1%
Identity: 33%
Fold: Nucleotidyltransferase
Superfamily: Nucleotidyltransferase
Family: Iojap/YbeB-like

Phyre2
10 |
| d2cfua2 |

### PDB 2cfu chain A domain 2

Region: 24 - 39
Aligned: 16
Modelled: 16
Confidence: 17.6%
Identity: 25%
Fold: Metallo-hydrolase/oxidoreductase
Superfamily: Metallo-hydrolase/oxidoreductase
Family: Alkylsulfatase-like

Phyre2
11 |
| d1ee8a2 |

### PDB 1ee8 chain A domain 2

Region: 31 - 77
Aligned: 22
Modelled: 22
Confidence: 17.3%
Identity: 23%
Fold: N-terminal domain of MutM-like DNA repair proteins
Superfamily: N-terminal domain of MutM-like DNA repair proteins
Family: N-terminal domain of MutM-like DNA repair proteins

Phyre2
12 |
| c1xk5A_ |

### PDB 1xk5 chain A

Region: 34 - 77
Aligned: 20
Modelled: 21
Confidence: 14.5%
Identity: 30%
PDB header:transport protein
Chain: A: PDB Molecule:snurportin-1;
PDBTitle: crystal structure of the m3g-cap-binding domain of2 snurportin1 in complex with a m3gpppg-cap dinucleotide

Phyre2
13 |
| c2cfuA_ |

### PDB 2cfu chain A

Region: 24 - 39
Aligned: 16
Modelled: 16
Confidence: 13.3%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:sdsa1;
PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.

Phyre2
14 |
| c2i82D_ |

### PDB 2i82 chain D

Region: 31 - 56
Aligned: 26
Modelled: 26
Confidence: 12.8%
Identity: 12%
PDB header:lyase/rna
Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a;
PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure

Phyre2
15 |
| d1oa8a_ |

### PDB 1oa8 chain A

Region: 76 - 102
Aligned: 23
Modelled: 27
Confidence: 12.7%
Identity: 30%
Fold: AXH domain
Superfamily: AXH domain
Family: AXH domain

Phyre2
16 |
| c1k82D_ |

### PDB 1k82 chain D

Region: 32 - 77
Aligned: 21
Modelled: 21
Confidence: 11.9%
Identity: 38%
PDB header:hydrolase/dna
Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase;
PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna

Phyre2
17 |
| d1q1oa_ |

### PDB 1q1o chain A

Region: 30 - 39
Aligned: 10
Modelled: 10
Confidence: 11.5%
Identity: 20%
Fold: beta-Grasp (ubiquitin-like)
Superfamily: CAD & PB1 domains
Family: PB1 domain

Phyre2
18 |
| c3km5B_ |

### PDB 3km5 chain B

Region: 17 - 76
Aligned: 60
Modelled: 60
Confidence: 11.4%
Identity: 8%
PDB header:cell invasion
Chain: B: PDB Molecule:lysine specific cysteine protease;
PDBTitle: crystal structure analysis of the k2 cleaved adhesin domain of lys-2 gingipain (kgp)

Phyre2
19 |
| c3gjxE_ |

### PDB 3gjx chain E

Region: 37 - 77
Aligned: 18
Modelled: 18
Confidence: 11.1%
Identity: 28%
PDB header:protein transport
Chain: E: PDB Molecule:snurportin-1;
PDBTitle: crystal structure of the nuclear export complex crm1-2 snurportin1-rangtp

Phyre2
20 |
| c3ce8A_ |

### PDB 3ce8 chain A

Region: 96 - 107
Aligned: 12
Modelled: 12
Confidence: 10.5%
Identity: 42%
PDB header:unknown function
Chain: A: PDB Molecule:putative pii-like nitrogen regulatory protein;
PDBTitle: crystal structure of a duf3240 family protein (sbal_0098) from2 shewanella baltica os155 at 2.40 a resolution

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3npeA_ |
|  | 36.6 | 26 | PDB header:oxidoreductase Chain: A: PDB Molecule:9-cis-epoxycarotenoid dioxygenase 1, chloroplastic; PDBTitle: structure of vp14 in complex with oxygen
2 | c3r8kB_ |
|  | 34.5 | 15 | PDB header:apoptosis Chain: B: PDB Molecule:heme-binding protein 2; PDBTitle: crystal structure of human soul protein (hexagonal form)
3 | c3fsnA_ |
|  | 30.4 | 18 | PDB header:isomerase Chain: A: PDB Molecule:retinal pigment epithelium-specific 65 kda protein; PDBTitle: crystal structure of rpe65 at 2.14 angstrom resolution
4 | c2biwC_ |
|  | 29.0 | 29 | PDB header:oxidoreductase Chain: C: PDB Molecule:apocarotenoid-cleaving oxygenase; PDBTitle: crystal structure of apocarotenoid cleavage oxygenase from2 synechocystis, native enzyme
5 | d2gova1 |
|  | 28.4 | 3 | Fold:Probable bacterial effector-binding domain Superfamily:Probable bacterial effector-binding domain Family:SOUL heme-binding protein
6 | d2o5aa1 |
|  | 21.2 | 47 | Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like
7 | d1sgva2 |
|  | 20.4 | 27 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
8 | c3upsA_ |
|  | 20.2 | 27 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:iojap-like protein; PDBTitle: crystal structure of iojap-like protein from zymomonas mobilis
9 | d2id1a1 |
|  | 19.1 | 33 | Fold:Nucleotidyltransferase Superfamily:Nucleotidyltransferase Family:Iojap/YbeB-like
10 | d2cfua2 |
|  | 17.6 | 25 | Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like
11 | d1ee8a2 |
|  | 17.3 | 23 | Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins
12 | c1xk5A_ |
|  | 14.5 | 30 | PDB header:transport protein Chain: A: PDB Molecule:snurportin-1; PDBTitle: crystal structure of the m3g-cap-binding domain of2 snurportin1 in complex with a m3gpppg-cap dinucleotide
13 | c2cfuA_ |
|  | 13.3 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid.
14 | c2i82D_ |
|  | 12.8 | 12 | PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure
15 | d1oa8a_ |
|  | 12.7 | 30 | Fold:AXH domain Superfamily:AXH domain Family:AXH domain
16 | c1k82D_ |
|  | 11.9 | 38 | PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
17 | d1q1oa_ |
|  | 11.5 | 20 | Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain
18 | c3km5B_ |
|  | 11.4 | 8 | PDB header:cell invasion Chain: B: PDB Molecule:lysine specific cysteine protease; PDBTitle: crystal structure analysis of the k2 cleaved adhesin domain of lys-2 gingipain (kgp)
19 | c3gjxE_ |
|  | 11.1 | 28 | PDB header:protein transport Chain: E: PDB Molecule:snurportin-1; PDBTitle: crystal structure of the nuclear export complex crm1-2 snurportin1-rangtp
20 | c3ce8A_ |
|  | 10.5 | 42 | PDB header:unknown function Chain: A: PDB Molecule:putative pii-like nitrogen regulatory protein; PDBTitle: crystal structure of a duf3240 family protein (sbal_0098) from2 shewanella baltica os155 at 2.40 a resolution
21 | c3hxrA_ |
| not modelled | 10.1 | 19 | PDB header:structural protein Chain: A: PDB Molecule:nucleoporin nup120; PDBTitle: nucleoporin nup120 from s.cerevisiae (aa 1-757)
22 | d2apoa2 |
| not modelled | 9.9 | 21 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
23 | d3proc2 |
| not modelled | 9.6 | 67 | Fold:Alpha-lytic protease prodomain-like Superfamily:Alpha-lytic protease prodomain Family:Alpha-lytic protease prodomain
24 | d1sr4a_ |
| not modelled | 9.4 | 43 | Fold:beta-Trefoil Superfamily:Ricin B-like lectins Family:Ricin B-like
25 | c1sr4A_ |
| not modelled | 9.4 | 43 | PDB header:toxin Chain: A: PDB Molecule:cytolethal distending toxin subunit a; PDBTitle: crystal structure of the haemophilus ducreyi cytolethal2 distending toxin
26 | c2i7fB_ |
| not modelled | 9.3 | 50 | PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin component of dioxygenase; PDBTitle: sphingomonas yanoikuyae b1 ferredoxin
27 | d1p5dx4 |
| not modelled | 8.8 | 29 | Fold:TBP-like Superfamily:Phosphoglucomutase, C-terminal domain Family:Phosphoglucomutase, C-terminal domain
28 | d1v9ka_ |
| not modelled | 8.7 | 24 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD
29 | d1k3xa2 |
| not modelled | 8.2 | 18 | Fold:N-terminal domain of MutM-like DNA repair proteins Superfamily:N-terminal domain of MutM-like DNA repair proteins Family:N-terminal domain of MutM-like DNA repair proteins
30 | c3i0uA_ |
| not modelled | 8.2 | 59 | PDB header:lyase Chain: A: PDB Molecule:phosphothreonine lyase ospf; PDBTitle: structure of the type iii effector/phosphothreonine lyase ospf from2 shigella flexneri
31 | c1k8wA_ |
| not modelled | 8.0 | 29 | PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna
32 | c3zv0D_ |
| not modelled | 7.7 | 44 | PDB header:cell cycle Chain: D: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1p-cbf5p complex
33 | d1aisb1 |
| not modelled | 7.6 | 43 | Fold:Cyclin-like Superfamily:Cyclin-like Family:Transcription factor IIB (TFIIB), core domain
34 | d1xzwa1 |
| not modelled | 7.6 | 67 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Purple acid phosphatase, N-terminal domain Family:Purple acid phosphatase, N-terminal domain
35 | c3fkaD_ |
| not modelled | 7.1 | 17 | PDB header:unknown function Chain: D: PDB Molecule:uncharacterized ntf-2 like protein; PDBTitle: crystal structure of a ntf-2 like protein of unknown function2 (spo1084) from silicibacter pomeroyi dss-3 at 1.69 a resolution
36 | d1usra_ |
| not modelled | 7.0 | 29 | Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases)
37 | d1pqsa_ |
| not modelled | 6.9 | 22 | Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain
38 | c2fugC_ |
| not modelled | 6.9 | 44 | PDB header:oxidoreductase Chain: C: PDB Molecule:nadh-quinone oxidoreductase chain 3; PDBTitle: crystal structure of the hydrophilic domain of respiratory complex i2 from thermus thermophilus
39 | c3dukD_ |
| not modelled | 6.7 | 12 | PDB header:unknown function Chain: D: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of a ntf2-like protein of unknown function2 (mfla_0564) from methylobacillus flagellatus kt at 2.200 a resolution
40 | c3s63B_ |
| not modelled | 6.5 | 25 | PDB header:lipid binding protein Chain: B: PDB Molecule:saposin-like protein; PDBTitle: saposin-like protein na-slp-1
41 | d1wjfa_ |
| not modelled | 6.2 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:N-terminal Zn binding domain of HIV integrase Family:N-terminal Zn binding domain of HIV integrase
42 | d2ey4a2 |
| not modelled | 6.1 | 18 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
43 | d1wfwa_ |
| not modelled | 5.9 | 19 | Fold:SH3-like barrel Superfamily:SH3-domain Family:SH3-domain
44 | d1e0ea_ |
| not modelled | 5.9 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:N-terminal Zn binding domain of HIV integrase Family:N-terminal Zn binding domain of HIV integrase
45 | d1r3ea2 |
| not modelled | 5.9 | 21 | Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB
46 | c2eouA_ |
| not modelled | 5.8 | 100 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 370-2 400) of human zinc finger protein 473
47 | d1d0qa_ |
| not modelled | 5.8 | 50 | Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger
48 | c3hefB_ |
| not modelled | 5.8 | 28 | PDB header:viral protein Chain: B: PDB Molecule:gene 1 protein; PDBTitle: crystal structure of the bacteriophage sf6 terminase small2 subunit
49 | c2v0xB_ |
| not modelled | 5.7 | 22 | PDB header:cell cycle Chain: B: PDB Molecule:lamina-associated polypeptide 2 isoforms PDBTitle: the dimerization domain of lap2alpha
50 | c2gu1A_ |
| not modelled | 5.7 | 36 | PDB header:hydrolase Chain: A: PDB Molecule:zinc peptidase; PDBTitle: crystal structure of a zinc containing peptidase from2 vibrio cholerae
51 | c3m1hB_ |
| not modelled | 5.7 | 14 | PDB header:cell invasion Chain: B: PDB Molecule:lysine specific cysteine protease; PDBTitle: crystal structure analysis of the k3 cleaved adhesin domain of lys-2 gingipain (kgp) from porphyromonas gingivalis w83
52 | c3cs5B_ |
| not modelled | 5.7 | 86 | PDB header:photosynthesis Chain: B: PDB Molecule:phycobilisome degradation protein nbla; PDBTitle: nbla protein from synechococcus elongatus pcc 7942
53 | d1xe0a_ |
| not modelled | 5.6 | 32 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Nucleoplasmin-like core domain Family:Nucleoplasmin-like core domain
54 | d1v3ea_ |
| not modelled | 5.5 | 29 | Fold:6-bladed beta-propeller Superfamily:Sialidases Family:Sialidases (neuraminidases)
55 | d3d32a1 |
| not modelled | 5.5 | 24 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:GABARAP-like
56 | c2jeuA_ |
| not modelled | 5.5 | 50 | PDB header:transcription Chain: A: PDB Molecule:regulatory protein e2; PDBTitle: transcription activator structure reveals redox control of2 a replication initiation reaction
57 | d2f2fa1 |
| not modelled | 5.4 | 43 | Fold:beta-Trefoil Superfamily:Ricin B-like lectins Family:Ricin B-like
58 | c2c2xB_ |
| not modelled | 5.4 | 26 | PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis
59 | d3e9la1 |
| not modelled | 5.4 | 28 | Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Prp8 beta-finger domain-like
60 | d1wj6a_ |
| not modelled | 5.3 | 27 | Fold:beta-Grasp (ubiquitin-like) Superfamily:CAD & PB1 domains Family:PB1 domain

Binding site prediction |

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