Job Description A0FGR9 Confidence 99.87% Date Thu Apr 26 09:38:06 BST 2012 Rank 19 Aligned Residues 188 % Identity 24% Template c3nsjA_ PDB info PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin Resolution 2.75 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		248	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.																		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	I	N	W	T	G	L	T	N	L	L	D	A	.	P	G	I	N	D	V	S	D	S	L	L	E	D	L	I	A	T	H	L	V	L	P	N	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	V	P	V	K	K	G	L	D	L	T	N	L	R	F	P	L	P	C	G	V	I	R
Query Conservation																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	Y	S	L	E	P	L	H	T	L	L	E	E	Q	N	P	K	R	E	A	L	R	Q	A	I	S	H	Y	I	M	S	R	A	R	W	Q	N	C	S	R	P	C	R	S	G	Q	H	K	S	S	H	D	S	C	Q	C	E	C	Q	D	S	K	V	T	N	Q	D	C	C	P	R	Q	R	G	L	A	H	L	V
Template Known Secondary structure									G	G	G	G	S		T	T		T																T		B				T	T	S			B	T	T					S	S		T	T					S		T	T	T	B		G	G	G		B	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370		.	.	.	.	.	.	.	.	.	380	.	.	.	.		.	.	.
Predicted Secondary structure																																																															.															.
Query SS confidence																																																															.															.
Query Sequence		V	H	L	L	E	A	E	Q	L	A	Q	K	D	N	F	L	G	L	R	G	K	S	D	P	Y	A	K	V	S	I	G	L	Q	H	F	R	S	R	T	I	Y	R	N	L	N	P	T	W	N	E	V	F	E	F	M	V	Y	E	V	P	G	.	Q	D	L	E	V	D	L	Y	D	E	D	T	D	R	.	D	D	F
Query Conservation																																																															.															.
Alig confidence													.			.	.	.	.																																												.															.
Template Conservation													.			.	.	.	.
Template Sequence		V	S	N	F	R	A	E	H	L	W	G	.	D	Y	.	.	.	.	T	T	A	T	D	A	Y	L	K	V	F	F	G	G	Q	E	F	R	T	G	V	V	W	N	N	N	N	P	R	W	T	D	K	M	D	F	E	N	V	L	L	S	T	G	G	P	L	R	V	Q	V	W	D	A	D	Y	G	W	D	D	D	L
Template Known Secondary structure									S				.	S	S	.	.	.	.		S											T	T								B		S		S	S		B												T	T	T													S	S	S
Template Predicted Secondary structure													.			.	.	.	.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.		.	430					.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.			.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.
Query SS confidence																																					.	.
Query Sequence		L	G	S	L	Q	I	C	L	G	D	V	M	T	N	R	V	V	D	E	W	F	V	L	N	D	T	T	S	G	R	L	H	L	R	L	.	.	E	W	L	S	L	L	T	D	Q	E	V	L	T	E	D	H	G	G	L	S	T	A	I	L	V
Query Conservation																																					.	.
Alig confidence												.	.	.	.												.	.	.								.	.
Template Conservation												.	.	.	.												.	.	.
Template Sequence		L	G	S	C	D	R	S	P	H	S	.	.	.	.	G	F	H	E	V	T	C	E	L	N	H	.	.	.	G	R	V	K	F	S	Y	H	A	K	C	L	P	H	L	T	G	G	T	C	L	E	Y	A	P	Q	G	L	L	G	D	P	P	G
Template Known Secondary structure											S	.	.	.	.										S	S	.	.	.	S												T	T			S	T	T	S								B	S	S
Template Predicted Secondary structure												.	.	.	.												.	.	.
Template SS confidence
		493	.	.	.	.	.	.	500	.	.					.	.	.	.	.	.	.	510	.	.	.				.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions