Job Description A0FGR9 Confidence 37.20% Date Thu Apr 26 09:38:06 BST 2012 Rank 72 Aligned Residues 140 % Identity 9% Template c1bp1A_ PDB info PDB header:bactericidal Chain: A: PDB Molecule:bactericidal/permeability-increasing protein; PDBTitle: crystal structure of bpi, the human bactericidal2 permeability-increasing protein Resolution 2.40 Å

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		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.																	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.				.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query SS confidence																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Query Sequence		M	I	M	E	S	K	F	R	E	K	L	E	P	K	I	R	E	K	.	S	I	H	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	F	T	F	T	K	L	Y	F	G	Q	K	C	P	R	V	.	.	.	N	G	V	K	A	H	T	N	T	C	N	R	R	R	V	T	V	D	L	Q	I
Query Conservation																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.
Alig confidence																				.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.												.
Template Conservation																																																																								.
Template Sequence		D	Y	A	S	Q	Q	G	T	A	A	L	Q	K	E	L	K	R	I	K	I	P	D	Y	S	D	S	F	K	I	K	H	L	G	K	G	H	Y	S	F	Y	S	M	D	I	R	E	F	Q	L	P	S	S	Q	I	S	M	V	P	N	V	G	L	K	F	S	I	S	N	A	N	.	I	K	I	S	G	K	W	K	A
Template Known Secondary structure																	T	T													T	T	T																										T	T	T											.
Template Predicted Secondary structure																																																																								.
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.	.	90	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260			.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.	.							.	.
Query SS confidence																																																															.	.							.	.
Query Sequence		C	Y	I	G	D	C	E	I	S	V	E	L	Q	K	I	Q	A	G	V	N	G	I	Q	L	Q	G	T	L	R	V	I	L	E	P	L	L	V	D	K	P	F	V	G	A	V	T	V	F	F	L	Q	K	P	H	L	Q	I	N	W	T	G	.	.	L	T	N	L	L	D	.	.	A	P	G	I	N	D	V	S	D
Query Conservation																																																															.	.							.	.
Alig confidence						.	.	.	.																										.													.															.	.							.	.
Template Conservation						.	.	.	.																										.													.
Template Sequence		Q	K	R	F	.	.	.	.	L	K	M	S	G	N	F	D	L	S	I	E	G	M	S	I	S	A	D	L	K	L	G	S	N	.	P	T	S	G	K	P	T	I	T	C	S	S	.	C	S	S	H	I	N	S	V	H	V	H	I	S	K	S	K	V	G	W	L	I	Q	L	F	H	K	K	I	E	S	A	L	R
Template Known Secondary structure				T	T	.	.	.	.																										.	T	T	T	T									.													T	T	S	S												T
Template Predicted Secondary structure						.	.	.	.																										.													.
Template SS confidence
		94	.	.	.					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure
Query SS confidence
Query Sequence		S	L	L	E	D	L	I	A	T	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	K	M	N	S	Q	V	C	E	K	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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