Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionC1P5Z7
DateThu Jan 5 10:55:47 GMT 2012
Unique Job ID8b5865fd2f0dcba9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2icwg1
Top template information
Fold:Superantigen MAM
Superfamily:Superantigen MAM
Family:Superantigen MAM
Confidence and coverage
Confidence: 11.8% Coverage: 16%
7 residues ( 16% of your sequence) have been modelled with 11.8% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
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3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40...
Sequence  MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
Secondary structure 



SS confidence 










































Disorder  ??

































???????
Disorder confidence 










































 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2icw chain G domain 1

3D model

Region: 3 - 9
Aligned: 7
Modelled: 7
Confidence: 11.8%
Identity: 71%
Fold: Superantigen MAM
Superfamily: Superantigen MAM
Family: Superantigen MAM

Phyre2

PDB 3tbi chain A

3D model

Region: 21 - 41
Aligned: 21
Modelled: 20
Confidence: 10.5%
Identity: 19%
PDB header:transcription
Chain: A: PDB Molecule:rna polymerase-associated protein gp33;
PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain

Phyre2

PDB 2zsh chain B

3D model

Region: 23 - 34
Aligned: 12
Modelled: 12
Confidence: 7.7%
Identity: 50%
PDB header:hormone receptor
Chain: B: PDB Molecule:della protein gai;
PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor

Phyre2

PDB 2hn8 chain A

3D model

Region: 15 - 23
Aligned: 9
Modelled: 9
Confidence: 7.5%
Identity: 44%
PDB header:viral protein
Chain: A: PDB Molecule:protein pb1-f2;
PDBTitle: structural characterization and oligomerization of pb1-f2,2 a pro-apoptotic influenza a virus protein

Phyre2

PDB 1scf chain A

3D model

Region: 11 - 35
Aligned: 24
Modelled: 25
Confidence: 7.4%
Identity: 25%
PDB header:hormone/growth factor
Chain: A: PDB Molecule:stem cell factor;
PDBTitle: human recombinant stem cell factor

Phyre2

PDB 1scf chain A

3D model

Region: 11 - 35
Aligned: 24
Modelled: 25
Confidence: 7.4%
Identity: 25%
Fold: 4-helical cytokines
Superfamily: 4-helical cytokines
Family: Short-chain cytokines

Phyre2

PDB 1scf chain C

3D model

Region: 11 - 35
Aligned: 24
Modelled: 25
Confidence: 6.5%
Identity: 25%
Fold: 4-helical cytokines
Superfamily: 4-helical cytokines
Family: Short-chain cytokines

Phyre2

PDB 1cmr chain A

3D model

Region: 12 - 27
Aligned: 12
Modelled: 16
Confidence: 6.2%
Identity: 83%
Fold: Knottins (small inhibitors, toxins, lectins)
Superfamily: Scorpion toxin-like
Family: Short-chain scorpion toxins

Phyre2

PDB 2ds2 chain A

3D model

Region: 2 - 7
Aligned: 6
Modelled: 6
Confidence: 6.2%
Identity: 83%
PDB header:plant protein
Chain: A: PDB Molecule:sweet protein mabinlin-2 chain a;
PDBTitle: crystal structure of mabinlin ii

Phyre2

PDB 1o7n chain A domain 2

3D model

Region: 1 - 8
Aligned: 8
Modelled: 8
Confidence: 6.2%
Identity: 50%
Fold: TBP-like
Superfamily: Bet v1-like
Family: Ring hydroxylating alpha subunit catalytic domain

Phyre2

PDB 1l8n chain A domain 2

3D model

Region: 16 - 20
Aligned: 5
Modelled: 5
Confidence: 5.9%
Identity: 80%
Fold: Zincin-like
Superfamily: beta-N-acetylhexosaminidase-like domain
Family: alpha-D-glucuronidase, N-terminal domain

Phyre2

PDB 3eno chain C

3D model

Region: 17 - 23
Aligned: 7
Modelled: 7
Confidence: 5.4%
Identity: 43%
PDB header:hydrolase/unknown function
Chain: C: PDB Molecule:uncharacterized protein pf2011;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1

Phyre2
1

d2icwg1
2

c3tbiA_
3

c2zshB_
4

c2hn8A_
5

c1scfA_
6

d1scfa_
7

d1scfc_
8

d1cmra_
9

c2ds2A_
10

d1o7na2
11

d1l8na2
12

c3enoC_



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2icwg1



11.8 71 Fold:Superantigen MAM
Superfamily:Superantigen MAM
Family:Superantigen MAM
2c3tbiA_



10.5 19 PDB header:transcription
Chain: A: PDB Molecule:rna polymerase-associated protein gp33;
PDBTitle: crystal structure of t4 gp33 bound to e. coli rnap beta-flap domain
3c2zshB_



7.7 50 PDB header:hormone receptor
Chain: B: PDB Molecule:della protein gai;
PDBTitle: structural basis of gibberellin(ga3)-induced della2 recognition by the gibberellin receptor
4c2hn8A_



7.5 44 PDB header:viral protein
Chain: A: PDB Molecule:protein pb1-f2;
PDBTitle: structural characterization and oligomerization of pb1-f2,2 a pro-apoptotic influenza a virus protein
5c1scfA_



7.4 25 PDB header:hormone/growth factor
Chain: A: PDB Molecule:stem cell factor;
PDBTitle: human recombinant stem cell factor
6d1scfa_



7.4 25 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
7d1scfc_



6.5 25 Fold:4-helical cytokines
Superfamily:4-helical cytokines
Family:Short-chain cytokines
8d1cmra_



6.2 83 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Short-chain scorpion toxins
9c2ds2A_



6.2 83 PDB header:plant protein
Chain: A: PDB Molecule:sweet protein mabinlin-2 chain a;
PDBTitle: crystal structure of mabinlin ii
10d1o7na2



6.2 50 Fold:TBP-like
Superfamily:Bet v1-like
Family:Ring hydroxylating alpha subunit catalytic domain
11d1l8na2



5.9 80 Fold:Zincin-like
Superfamily:beta-N-acetylhexosaminidase-like domain
Family:alpha-D-glucuronidase, N-terminal domain
12c3enoC_



5.4 43 PDB header:hydrolase/unknown function
Chain: C: PDB Molecule:uncharacterized protein pf2011;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0