Phyre 2 alignment of C1P621 with c3e7nB_

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Job Description | C1P621
Confidence | 0.49% | Date | Wed Jan 25 15:20:08 GMT 2012
Rank | 43 | Aligned Residues | 25
% Identity | 16% | Template | c3e7nB_
PDB info | PDB header:transport protein | Chain: B: PDB Molecule:d-ribose high-affinity transport system; | PDBTitle: crystal structure of d-ribose high-affinity transport system from2 salmonella typhimurium lt2
Resolution | 2.45 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | F | Y | F | Y | S | Q | A | V | D | E | S | G | V | T | R | X | X | X | X | X | X | X | X | X
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | H | E | Q | F | K | K | L | T | A | D | S | Q | A | V | I | R | S | G | E | C | S | P | Y | A | N
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | T | T | S | S |  |  |  |  |  |  |  |  | S | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 106 | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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