Quickphyre alignment of query sequence to fold library protein c1x3kA_

QuickPhyre Alignment of query sequence to fold library protein c1x3kA_

FASTA Text version of alignment

PSSM Score Key
-10																			10

Bad																			Good

Secondary Structure Key

E

beta strand

C

Coil

H

alpha helix

Query Index	.	.	.	.	:	.	.	.	.	10	.	.	.	.	:	.	.	.	.	20	.	.	.	.	:	.	.	.	.	30	.	.	.	.	:	.	.	.	.	40	.	.	.	.	:	.	.	.	.	50	.	.	.	.	:	.	.			.	.	60	.	.	.	.	:	.	.	.	.	70	.	.	.	.	:	.	.	.	.	80	.	.	.	.	:	.	.	.	.	90	.	.	.	.	:	.	.	.	.	100	.	.	.	.	:	.	.	.	.	110	.	.	.	.	:	.	.	.	.	120	.	.	.	.	:	.	.	.	.	130	.	.	.	.	:	.					.	.	.	140	.	.	.	.	:
Query Sequence Conservation 30 %	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					-	-	-	-	-	-	-	-	-
Query Sequence Conservation 40 %	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					-	-	-	-	-	-	-	-	-
Query Sequence Conservation 50 %	-	-	-	-	-	-	-	-	8	6	6	1	1	5	1	1	2	2	3	2	8	2	1	3	3	2	2	1	2	1	1	9	3	2	2	1	1	1	6	7	1	1	1	1	1	8	1	1	9	10	1	1	2	-	-	-	-			1	1	2	1	3	1	3	4	3	2	9	1	1	2	1	2	1	8	5	1	1	1	2	1	1	6	9	4	-	-	-	5	1	1	3	1	1	2	0	2	3	1	7	1	1	1	2	1	1	1	3	1	10	2	1	1	1	3	1	4	1	1	5	8	9	2	3	1	8	1	1	1	1	1	1	8	4	1	9					3	2	5	2	7	1	2	5	10
Query Sequence Conservation 60 %	-	-	-	-	-	-	-	1	8	6	5	2	0	5	1	0	1	2	1	1	8	1	0	3	2	2	1	0	1	0	0	10	2	0	1	0	2	0	5	6	1	0	1	0	0	8	0	0	9	10	1	0	1	6	3	1	3			0	1	1	0	3	0	3	3	2	1	10	0	1	0	0	3	0	7	5	0	2	0	2	0	0	5	9	5	-	-	-	4	1	0	2	0	0	3	0	1	2	0	7	0	1	0	1	1	0	0	2	0	10	1	1	0	1	2	0	5	0	0	5	7	8	1	3	1	7	1	0	1	0	1	0	6	4	0	10					2	1	4	2	7	0	2	5	10
Query Sequence Entropy (Normalised)	2	2	1	2	1	1	1	1	2	3	1	2	2	3	1	1	3	1	1	1	9	1	2	2	1	0	3	1	1	1	1	4	1	1	1	3	1	3	3	4	1	1	2	5	3	2	2	1	3	6	1	2	4	2	2	2	2			1	1	1	1	3	2	2	2	2	2	5	3	2	2	3	2	1	2	2	1	1	2	2	2	2	3	3	3	0	1	0	2	1	1	1	2	1	1	3	2	1	1	7	2	1	2	1	3	1	2	1	2	4	1	1	2	1	1	2	2	1	1	2	2	1	1	2	1	3	1	2	2	2	2	1	2	7	1	3					2	2	1	1	3	2	1	2	3
Query Sequence Evolutionary Trace	6	6	3	5	7	9	8	2	7	1	0	5	1	8	6	2	1	7	4	4	2	5	2	5	5	3	3	4	1	6	4	5	1	0	6	3	7	9	1	9	4	7	5	6	6	9	2	1	0	8	7	8	1	0	4	8	7			6	7	7	7	3	2	3	6	9	3	5	8	3	2	9	9	1	6	8	5	0	8	5	2	0	8	7	5	7	8	9	8	6	5	5	5	2	3	2	6	5	1	8	8	5	3	1	0	3	3	7	8	1	0	9	9	3	9	1	0	6	5	7	6	4	5	4	4	8	8	7	1	0	4	3	3	8	9	6					6	3	7	6	8	3	7	1	0

Query Predicted Secondary Structure	C	C	H	H	H	H	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	E	E	C	H	H	H	H	H	H	C	C	C	C	C	C	C	C	-	-	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	H	H	H	H	H	H	H	H	H	-	-	-	-	H	H	H	H	H	H	H	H	C	-	-	-	-	-	-	-	-
Query Sequence	S	V	Y	D	A	A	A	Q	L	T	A	D	V	K	K	D	L	R	D	S	W	K	V	I	G	S	D	K	K	G	N	G	V	A	L	M	T	T	L	F	A	D	N	Q	E	T	I	G	Y	F	K	R	L	G	N	V	S	-	-	Q	G	M	A	N	D	K	L	R	G	H	S	I	T	L	M	Y	A	L	Q	N	F	I	D	Q	L	D	N	P	D	D	L	V	C	V	V	E	K	F	A	V	N	H	I	T	R	K	I	S	A	A	E	F	G	K	I	N	G	P	I	K	K	V	L	A	S	K	N	F	G	D	K	Y	A	N	A	W	A	K	-	-	-	-	L	V	A	V	V	Q	A	A	L	-	-	-	-	-	-	-	-
Match Quality					+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+			+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+				+	+	+	+	+	+	+	+	+	+	+	+					+	+	+	+	+	-	+	+	+
Alignment Accuracy
c1x3kA_ Sequence	-	-	-	-	A	F	V	G	L	S	D	S	E	E	K	L	V	R	D	A	W	A	P	I	H	G	D	L	Q	G	T	A	N	T	V	F	Y	N	Y	L	K	K	Y	P	S	N	Q	D	K	F	E	T	L	K	G	H	P	L	D	E	V	K	D	T	A	N	F	K	L	I	A	G	R	I	F	T	I	F	D	N	C	V	K	N	V	G	N	D	K	G	F	Q	K	V	I	A	D	M	S	G	P	H	V	A	R	P	I	T	H	G	S	Y	N	D	L	R	G	V	I	Y	D	S	M	-	-	-	H	L	D	S	T	H	G	A	A	W	N	K	M	M	D	N	F	F	Y	V	F	Y	E	C	L	D	G	R	C	S	Q	F	S
c1x3kA_ Predicted Secondary Structure	-	-	-	-	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	H	H	H	H	H	H	C	H	H	C	C	C	C	C	C	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	-	-	-	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C

Model Pockets/Cavities/Clefts						2	2		2												3															1			1	1						1			1	1																				1			1	1			1	1							2						2							1			1	1			1		1				1	1			1	1			3																	3	2	2					1				1
Consensus Function	2	2	1	1	2	4	4	1	6	2	2	2	0	4	2	1	1	3	2	2	4	2	1	2	2	1	1	1	1	2	1	5	1	0	2	4	3	3	5	8	1	2	2	2	2	8	1	0	6	9	2	3	1	2	2	3	3			2	2	3	2	2	1	2	3	4	1	8	3	1	4	6	4	0	7	7	2	0	3	2	1	0	6	5	3	2	2	3	5	2	2	2	2	1	2	3	2	2	3	8	3	2	4	1	3	1	1	3	6	6	0	3	6	4	4	0	2	2	2	4	4	4	2	2	1	5	3	2	0	0	1	1	3	5	4	6					6	1	4	2	8	1	3	2	3
Template Index					.	.	.	.	:	.	.	.	.	10	.	.	.	.	:	.	.	.	.	20	.	.	.	.	:	.	.	.	.	30	.	.	.	.	:	.	.	.	.	40	.	.	.	.	:	.	.	.	.	50	.	.	.	.	:	.	.	.	.	60	.	.	.	.	:	.	.	.	.	70	.	.	.	.	:	.	.	.	.	80	.	.	.	.	:	.	.	.	.	90	.	.	.	.	:	.	.	.	.	100	.	.	.	.	:	.	.	.	.	110	.	.	.	.	:	.	.	.	.				120	.	.	.	.	:	.	.	.	.	130	.	.	.	.	:	.	.	.	.	140	.	.	.	.	:	.	.	.	.	150	.

Consensus Functional Sites Mapped onto Model