QuickPhyre Alignment of query sequence to fold library protein d1fhja_

FASTA Text version of alignment

PSSM Score Key
-10                      10
                             
Bad                      Good
Secondary Structure Key
Ebeta strand
CCoil
Halpha helix

Query Index....:... .10....:....20....:....30....:....40....:....50....:....60....:....70....:....80....:....90....:....100.... :....110....:....120...   .:....130....:....140....:    
Query Sequence Conservation 30 %-------- ------------------------------------------------------------------------------------------------ -------------------   ----------------------     
Query Sequence Conservation 40 %-------- ------------------------------------------------------------------------------------------------ -------------------   ----------------------     
Query Sequence Conservation 50 %-------- 8661151122328213322121193221116711111811910112----1121313432911212185111211694---5113112023171112 11131102111314115892   31811111184193252712510     
Query Sequence Conservation 60 %-------1 86520510121181032210100102010205610100800910101631301103033211001003075020200595---4102003012070101 10020101101205005781   317101010640102142702510     
Query Sequence Entropy (Normalised)22121111 231223113111912210311114111313341125322136124222211113222225322321221122223330102111211321172121 3121241121122112211   2131222212713221132123     
Query Sequence Evolutionary Trace66357982 710518621744252553341645106379194756692108781048767773236935832991685085208757898655523265188531 0337810993910657645   4488710433896637683710     
 
Query Predicted Secondary StructureCCHHHHHH-CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHEECHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHC-----
Query SequenceSVYDAAAQ-LTADVKKDLRDSWKVIGSDKKGNGVALMTTLFADNQETIGYFKRLGNVSQGMANDKLRGHSITLMYALQNFIDQLDNPDDLVCVVEKFAVNHITRK-ISAAEFGKINGPIKKVLAS---KNFGDKYANAWAKLVAVVQAAL-----
Match Quality         +++++++++++++++++++++++++++++++++++++++++++++   +--++++++++++++++++++++++++++   ++++++++++++++++ +++++++++++++-+++++   ++++++++++++++++++++++     
Alignment Accuracy                                                                                                                                                           
d1fhja_ Sequence--------VLSPADKTNIKSTWDKIGGHAGDYGGEALDRTFQSFPTTKTYFPHF---DLSPGSAQVKAHGKKVADALTTAVAHLDD---LPGALSALSDLHAYKLRVDPVNFKLLSHCLLVTLACHHPTEFTPAVHASLDKFFTAVSTVLTSKYR
d1fhja_ Predicted Secondary Structure--------CCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHCH---HCCCCCHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
d1fhja_ Known Secondary Structure--------CCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGTTTT---CCTTTTHHHHHHHHHHHHHHHHHHHTTTT---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCGGGTTHHHHHHHHHHHHHHHHHHHGGGC
 
Template Functional Sites                                              f  ff ff              f  ff  ff                   f  ff   f f   ff  f                              ff  f     
Model Pockets/Cavities/Clefts                     2  2      2    1         1  11                 1  11  11                   1  11  1      11  11  1   2               2  2   11  1     
Consensus Function 11011220 311103100211310321110123102322141211180069232112212221012318214630871021003421223112101422482132 1112570263303113431   1142200112424313284217     
Template Index         ....:....10....:....20....:....30....:....40....:.   ...50....:....60....:....70....:   ....80....:....90....:....100....:....110....:....120....:....130....:....140

Consensus Functional Sites Mapped onto Model