Quickphyre alignment of query sequence to fold library protein d2gdm_

QuickPhyre Alignment of query sequence to fold library protein d2gdm__

PSSM Score Key
-10																			10

Bad																			Good

Secondary Structure Key

beta strand

Coil

alpha helix

Query Index	.	.	.	.	:	.	.	.			.	10	.	.	.	.	:	.	.	.	.	20	.	.	.	.	:	.	.	.	.	30	.	.	.	.	:	.	.	.	.	40	.	.	.	.	:	.	.	.	.	50	.	.	.	.	:	.	.		.	.	60	.	.	.	.	:	.	.	.	.	70	.	.	.	.	:	.	.	.	.	80	.	.	.	.	:	.	.			.	.	90	.	.	.	.	:	.	.	.	.	100	.	.	.	.	:	.	.	.	.	110	.	.	.	.	:	.	.	.	.	120	.	.	.				.	:	.	.	.	.	130	.	.	.	.	:	.	.	.	.	140	.	.	.	.	:
Query Sequence Conservation 30 %	-	-	-	-	-	-	-	-			-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Query Sequence Conservation 40 %	-	-	-	-	-	-	-	-			-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-				-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Query Sequence Conservation 50 %	-	-	-	-	-	-	-	-			8	6	6	1	1	5	1	1	2	2	3	2	8	2	1	3	3	2	2	1	2	1	1	9	3	2	2	1	1	1	6	7	1	1	1	1	1	8	1	1	9	10	1	1	2	-	-	-	-		1	1	2	1	3	1	3	4	3	2	9	1	1	2	1	2	1	8	5	1	1	1	2	1	1	6	9	4	-	-			-	5	1	1	3	1	1	2	0	2	3	1	7	1	1	1	2	1	1	1	3	1	10	2	1	1	1	3	1	4	1	1	5	8	9	2				3	1	8	1	1	1	1	1	1	8	4	1	9	3	2	5	2	7	1	2	5	10
Query Sequence Conservation 60 %	-	-	-	-	-	-	-	1			8	6	5	2	0	5	1	0	1	2	1	1	8	1	0	3	2	2	1	0	1	0	0	10	2	0	1	0	2	0	5	6	1	0	1	0	0	8	0	0	9	10	1	0	1	6	3	1	3		0	1	1	0	3	0	3	3	2	1	10	0	1	0	0	3	0	7	5	0	2	0	2	0	0	5	9	5	-	-			-	4	1	0	2	0	0	3	0	1	2	0	7	0	1	0	1	1	0	0	2	0	10	1	1	0	1	2	0	5	0	0	5	7	8	1				3	1	7	1	0	1	0	1	0	6	4	0	10	2	1	4	2	7	0	2	5	10
Query Sequence Entropy (Normalised)	2	2	1	2	1	1	1	1			2	3	1	2	2	3	1	1	3	1	1	1	9	1	2	2	1	0	3	1	1	1	1	4	1	1	1	3	1	3	3	4	1	1	2	5	3	2	2	1	3	6	1	2	4	2	2	2	2		1	1	1	1	3	2	2	2	2	2	5	3	2	2	3	2	1	2	2	1	1	2	2	2	2	3	3	3	0	1			0	2	1	1	1	2	1	1	3	2	1	1	7	2	1	2	1	3	1	2	1	2	4	1	1	2	1	1	2	2	1	1	2	2	1	1				2	1	3	1	2	2	2	2	1	2	7	1	3	2	2	1	1	3	2	1	2	3
Query Sequence Evolutionary Trace	6	6	3	5	7	9	8	2			7	1	0	5	1	8	6	2	1	7	4	4	2	5	2	5	5	3	3	4	1	6	4	5	1	0	6	3	7	9	1	9	4	7	5	6	6	9	2	1	0	8	7	8	1	0	4	8	7		6	7	7	7	3	2	3	6	9	3	5	8	3	2	9	9	1	6	8	5	0	8	5	2	0	8	7	5	7	8			9	8	6	5	5	5	2	3	2	6	5	1	8	8	5	3	1	0	3	3	7	8	1	0	9	9	3	9	1	0	6	5	7	6	4	5				4	4	8	8	7	1	0	4	3	3	8	9	6	6	3	7	6	8	3	7	1	0

Query Predicted Secondary Structure	C	C	H	H	H	H	H	H	-	-	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	E	E	C	H	H	H	H	H	H	C	C	C	C	C	C	C	C	-	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	H	-	-	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	-	-	-	H	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	-	-	-	-	-	-	-	-
Query Sequence	S	V	Y	D	A	A	A	Q	-	-	L	T	A	D	V	K	K	D	L	R	D	S	W	K	V	I	G	S	D	K	K	G	N	G	V	A	L	M	T	T	L	F	A	D	N	Q	E	T	I	G	Y	F	K	R	L	G	N	V	S	-	Q	G	M	A	N	D	K	L	R	G	H	S	I	T	L	M	Y	A	L	Q	N	F	I	D	Q	L	D	N	P	D	-	-	D	L	V	C	V	V	E	K	F	A	V	N	H	I	T	R	K	I	S	A	A	E	F	G	K	I	N	G	P	I	K	K	V	L	A	S	-	-	-	K	N	F	G	D	K	Y	A	N	A	W	A	K	L	V	A	V	V	Q	A	A	L	-	-	-	-	-	-	-	-
Match Quality											+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+		+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+			+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+				+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Alignment Accuracy
d2gdm__ Sequence	-	-	-	-	-	-	-	-	G	A	L	T	E	S	Q	A	A	L	V	K	S	S	W	E	E	F	N	A	N	I	P	K	H	T	H	R	F	F	I	L	V	L	E	I	A	P	A	A	K	D	L	F	S	F	L	K	G	T	S	E	V	P	Q	N	N	P	E	L	Q	A	H	A	G	K	V	F	K	L	V	Y	E	A	A	I	Q	L	E	V	T	G	V	V	V	T	D	A	T	L	K	N	L	G	S	V	H	V	S	K	G	V	A	D	A	H	F	P	V	V	K	E	A	I	L	K	T	I	K	E	V	V	G	A	K	W	S	E	E	L	N	S	A	W	T	I	A	Y	D	E	L	A	I	V	I	K	K	E	M	D	D	A	A
d2gdm__ Predicted Secondary Structure	-	-	-	-	-	-	-	-	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C
d2gdm__ Known Secondary Structure	-	-	-	-	-	-	-	-	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	G	G	G	G	G	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	G	G	G	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	G	G	G	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C

Template Functional Sites																																																f			f	f	f	f																	f			f	f			f	f																						f			f	f			f		f				f	f			f																												f			f	f			f
Model Pockets/Cavities/Clefts																																						1			1							1			1	1																			1	1		1	1			1	1		2	2											2		2		2	2			1			1	1			1		1					1			1																												1			1	1			1
Consensus Function	1	1	0	1	1	2	2	0			3	1	1	1	0	3	1	0	0	2	1	1	2	1	0	2	2	1	1	1	0	1	1	3	1	0	2	3	2	2	4	4	1	2	1	1	1	7	0	0	5	9	3	3	0	1	1	2	2		1	2	2	2	1	0	1	2	3	1	8	4	1	4	6	3	0	7	6	1	1	3	1	0	0	3	4	2	1	2			3	3	3	1	3	2	0	1	4	2	2	4	8	2	1	4	0	3	1	1	2	3	7	0	2	6	1	3	0	1	1	1	3	3	3	1				1	1	4	2	2	0	0	1	1	2	3	2	4	2	4	3	2	7	4	2	1	6
Template Index									.	.	.	.	:	.	.	.	.	10	.	.	.	.	:	.	.	.	.	20	.	.	.	.	:	.	.	.	.	30	.	.	.	.	:	.	.	.	.	40	.	.	.	.	:	.	.	.	.	50	.	.	.	.	:	.	.	.	.	60	.	.	.	.	:	.	.	.	.	70	.	.	.	.	:	.	.	.	.	80	.	.	.	.	:	.	.	.	.	90	.	.	.	.	:	.	.	.	.	100	.	.	.	.	:	.	.	.	.	110	.	.	.	.	:	.	.	.	.	120	.	.	.	.	:	.	.	.	.	130	.	.	.	.	:	.	.	.	.	140	.	.	.	.	:	.	.	.	.	150	.	.

Consensus Functional Sites Mapped onto Model