Quickphyre alignment of query sequence to fold library protein d3sdha

QuickPhyre Alignment of query sequence to fold library protein d3sdha_

PSSM Score Key
-10																			10

Bad																			Good

Secondary Structure Key

beta strand

Coil

alpha helix

Query Index	.	.	.	.	:	.	.	.	.	10	.	.	.	.	:	.	.	.	.	20	.	.	.	.	:	.	.	.	.	30	.	.	.	.	:	.	.	.	.	40	.	.	.	.	:	.	.	.	.	50	.	.	.	.	:	.	.	.	.	60	.	.	.	.	:	.	.	.	.	70	.	.	.	.	:	.	.	.	.	80	.	.	.	.	:	.	.	.	.	90	.	.	.	.	:	.	.	.	.	100	.	.	.	.	:	.	.	.	.	110	.	.	.	.	:	.	.	.	.	120	.	.	.	.	:	.	.	.	.	130	.	.	.	.	:	.	.	.	.	140	.	.	.	.
Query Sequence Conservation 30 %	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Query Sequence Conservation 40 %	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
Query Sequence Conservation 50 %	-	-	-	-	-	-	-	-	8	6	6	1	1	5	1	1	2	2	3	2	8	2	1	3	3	2	2	1	2	1	1	9	3	2	2	1	1	1	6	7	1	1	1	1	1	8	1	1	9	10	1	1	2	-	-	-	-	1	1	2	1	3	1	3	4	3	2	9	1	1	2	1	2	1	8	5	1	1	1	2	1	1	6	9	4	-	-	-	5	1	1	3	1	1	2	0	2	3	1	7	1	1	1	2	1	1	1	3	1	10	2	1	1	1	3	1	4	1	1	5	8	9	2	3	1	8	1	1	1	1	1	1	8	4	1	9	3	2	5	2	7	1	2	5	10
Query Sequence Conservation 60 %	-	-	-	-	-	-	-	1	8	6	5	2	0	5	1	0	1	2	1	1	8	1	0	3	2	2	1	0	1	0	0	10	2	0	1	0	2	0	5	6	1	0	1	0	0	8	0	0	9	10	1	0	1	6	3	1	3	0	1	1	0	3	0	3	3	2	1	10	0	1	0	0	3	0	7	5	0	2	0	2	0	0	5	9	5	-	-	-	4	1	0	2	0	0	3	0	1	2	0	7	0	1	0	1	1	0	0	2	0	10	1	1	0	1	2	0	5	0	0	5	7	8	1	3	1	7	1	0	1	0	1	0	6	4	0	10	2	1	4	2	7	0	2	5	10
Query Sequence Entropy (Normalised)	2	2	1	2	1	1	1	1	2	3	1	2	2	3	1	1	3	1	1	1	9	1	2	2	1	0	3	1	1	1	1	4	1	1	1	3	1	3	3	4	1	1	2	5	3	2	2	1	3	6	1	2	4	2	2	2	2	1	1	1	1	3	2	2	2	2	2	5	3	2	2	3	2	1	2	2	1	1	2	2	2	2	3	3	3	0	1	0	2	1	1	1	2	1	1	3	2	1	1	7	2	1	2	1	3	1	2	1	2	4	1	1	2	1	1	2	2	1	1	2	2	1	1	2	1	3	1	2	2	2	2	1	2	7	1	3	2	2	1	1	3	2	1	2	3
Query Sequence Evolutionary Trace	6	6	3	5	7	9	8	2	7	1	0	5	1	8	6	2	1	7	4	4	2	5	2	5	5	3	3	4	1	6	4	5	1	0	6	3	7	9	1	9	4	7	5	6	6	9	2	1	0	8	7	8	1	0	4	8	7	6	7	7	7	3	2	3	6	9	3	5	8	3	2	9	9	1	6	8	5	0	8	5	2	0	8	7	5	7	8	9	8	6	5	5	5	2	3	2	6	5	1	8	8	5	3	1	0	3	3	7	8	1	0	9	9	3	9	1	0	6	5	7	6	4	5	4	4	8	8	7	1	0	4	3	3	8	9	6	6	3	7	6	8	3	7	1	0

Query Predicted Secondary Structure	C	C	H	H	H	H	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	E	E	C	H	H	H	H	H	H	C	C	C	C	C	C	C	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C
Query Sequence	S	V	Y	D	A	A	A	Q	L	T	A	D	V	K	K	D	L	R	D	S	W	K	V	I	G	S	D	K	K	G	N	G	V	A	L	M	T	T	L	F	A	D	N	Q	E	T	I	G	Y	F	K	R	L	G	N	V	S	Q	G	M	A	N	D	K	L	R	G	H	S	I	T	L	M	Y	A	L	Q	N	F	I	D	Q	L	D	N	P	D	D	L	V	C	V	V	E	K	F	A	V	N	H	I	T	R	K	I	S	A	A	E	F	G	K	I	N	G	P	I	K	K	V	L	A	S	K	N	F	G	D	K	Y	A	N	A	W	A	K	L	V	A	V	V	Q	A	A	L
Match Quality	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+	+
Alignment Accuracy
d3sdha_ Sequence	S	V	Y	D	A	A	A	Q	L	T	A	D	V	K	K	D	L	R	D	S	W	K	V	I	G	S	D	K	K	G	N	G	V	A	L	M	T	T	L	F	A	D	N	Q	E	T	I	G	Y	F	K	R	L	G	N	V	S	Q	G	M	A	N	D	K	L	R	G	H	S	I	T	L	M	Y	A	L	Q	N	F	I	D	Q	L	D	N	P	D	D	L	V	C	V	V	E	K	F	A	V	N	H	I	T	R	K	I	S	A	A	E	F	G	K	I	N	G	P	I	K	K	V	L	A	S	K	N	F	G	D	K	Y	A	N	A	W	A	K	L	V	A	V	V	Q	A	A	L
d3sdha_ Predicted Secondary Structure	C	C	C	C	H	H	H	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	H	H	H	H	H	H	H	H	H	H	C	C	C	C	C	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C
d3sdha_ Known Secondary Structure	C	H	H	H	H	H	H	H	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	T	T	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	G	G	G	G	G	G	C	G	G	G	T	T	G	G	G	G	G	G	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	T	T	T	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	C	H	H	H	H	H	C	H	H	H	H	H	H	H	H	H	H	H	H	C	C	C	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	H	C

Template Functional Sites																																				f			f							f			f	f		f	f															f			f	f			f	f			f																				f	f			f		f				f	f		f	f				f																					f
Model Pockets/Cavities/Clefts																																				1			1							1			1	1																		1			1	1			1	1																				1			1	1			1		1				1	1			1																									1			1
Consensus Function	1	1	0	1	1	2	2	0	3	1	1	1	0	3	1	0	0	2	1	1	2	1	0	2	2	1	1	1	0	1	1	3	1	0	2	5	2	2	6	4	1	2	1	1	1	8	0	0	6	9	2	4	3	1	1	2	2	1	2	2	2	1	0	1	2	3	1	8	2	1	5	7	3	0	8	7	1	0	4	1	0	0	3	4	2	1	2	2	3	1	1	2	1	0	1	2	2	2	5	8	2	1	5	0	4	1	1	2	6	7	0	4	7	1	3	0	3	1	1	3	3	3	1	1	1	4	2	2	0	0	1	1	2	3	2	4	2	5	3	2	6	1	2	1	2
Template Index	.	.	.	.	:	.	.	.	.	10	.	.	.	.	:	.	.	.	.	20	.	.	.	.	:	.	.	.	.	30	.	.	.	.	:	.	.	.	.	40	.	.	.	.	:	.	.	.	.	50	.	.	.	.	:	.	.	.	.	60	.	.	.	.	:	.	.	.	.	70	.	.	.	.	:	.	.	.	.	80	.	.	.	.	:	.	.	.	.	90	.	.	.	.	:	.	.	.	.	100	.	.	.	.	:	.	.	.	.	110	.	.	.	.	:	.	.	.	.	120	.	.	.	.	:	.	.	.	.	130	.	.	.	.	:	.	.	.	.	140	.	.	.	.

Consensus Functional Sites Mapped onto Model