Test System : COMPLEX (MYRISTYLATION/TRANSFERASE)

Description
PDB Code
Resolution
SCOP domain(s)
ComplexV-1 NEF PROTEIN IN COMPLEX WITH WILD TYPE FYN SH3 DOMAIN
1AVZ
3.00
d1avza_ + d1avzc_
Component 1HIV-1 NEF PROTEIN, UNLIGANDED CORE DOMAIN
1AVV
3.00
d1avv__
Component 2FYN PROTO-ONCOGENE TYROSINE KINASE (SH3 DOMAIN)
1SHF
1.90
d1shfa_

RMSD best possible fit of...
(Angstroms)
Whole Complex
Interface
All atomsC alpha atomsAll atomsC alpha atoms
Component 1 alone
1.2429
0.6828
1.3071
0.7391
Component 2 alone
1.2594
0.4190
1.3626
0.4035
Combined Components
1.2488
0.6000
1.3326
0.6113

Parsed coordinates
These are not exactly the same as the original PDB files in that they have been run through our PDB parser, which does various things such as remove alternative atoms. They may also have had their chain IDs changed so that the components match the complex. Any other changes such as truncations are noted in the box below.

Complex
Component 1
Component 2
Truncated first 3 residues and removed VAL148 from 1avz

Decoy set ( gzipped tarball )