% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb2alp.ent 2alp { ALL 0.24459 -0.96522 0.09188 63.77548 0.84158 0.25841 0.47420 -7.80658 -0.48146 -0.03865 0.87556 12.80995 } /disk3/pdb/pdb2snv.ent 2snv { ALL 0.99648 -0.06973 -0.04648 2.25547 0.07022 0.99749 0.00894 -2.64840 0.04574 -0.01218 0.99888 -1.54142 } % Reading block file... Blocfile read: Length: 210 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 210 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 206 % The alignment: >2alp (cluster A) sequence >2snv (cluster B) sequence >space >2alp_dssp (cluster A) secondary structure from DSSP >2snv_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * A - N E I E V E GR E- 1 0.55100 1.97366 5.71000 GL TE 1 0.45900 1.96379 4.79000 IF -E 1 0.46300 1.84106 4.83000 ED EE 1 0.76200 1.27859 7.82000 YV EE 1 0.72300 1.49356 7.43000 SK EE 0 0.41400 1.60296 4.34000 IN EE 0 0.09600 2.48629 1.16000 NE TT 0 0.02800 2.88796 0.48000 ND TT 0 0.01300 2.81137 0.33000 AG TT 0 0.06700 2.55079 0.87000 SD EE 0 0.10700 2.56029 1.27000 V E LI EE 0 0.12300 1.62374 1.43000 CG EE 1 0.80000 1.17910 8.20000 SH EE 1 0.84200 0.94498 8.62000 VA -E 1 0.58400 1.45289 6.04000 GL -E 1 0.56700 1.57648 5.87000 FA EE 1 0.59900 1.73959 6.19000 SM EE 1 0.53300 1.86326 5.53000 VE ET 0 0.41200 2.01218 4.32000 T E R E G T A T T E KG ET 0 0.00000 2.59501 0.11000 GK EE 0 0.22600 2.01672 2.46000 FV EE 1 0.52200 1.18036 5.42000 VM EE 1 0.86900 1.11828 8.89000 TK EE 1 0.80800 1.37135 8.28000 AP -E 1 0.82500 1.16671 8.45000 GL GT 1 0.70700 1.57842 7.27000 HH GT 1 0.78500 1.43232 8.05000 CV G- 1 0.70300 1.42196 7.23000 G - T - V T NK T- 0 0.00000 3.30655 0.00000 AG -S 0 0.02500 2.64979 0.45000 TT EE 0 0.28400 2.16999 3.04000 AI EE 1 0.60100 1.68386 6.21000 RD ES 1 0.55300 1.58773 5.73000 I E G T GH TS 0 0.00000 2.70196 0.14000 AP ET 0 0.27700 2.05764 2.97000 VV ET 0 0.18000 2.37521 2.00000 VL EG GS EG K G TL ES FK E- AF E- 0 0.40000 0.99052 4.20000 AT EE 1 0.88200 0.99089 9.02000 RK EE 1 0.76100 1.25074 7.81000 VS EE 1 0.71300 1.38398 7.33000 F - PS SG 0 0.33700 2.14140 3.57000 GA BG 1 0.56200 1.71922 5.82000 NY SG 1 0.76200 1.18953 7.82000 DD -T 1 0.79400 1.37931 8.14000 RM EE 1 0.87000 1.21933 8.90000 AE EE 1 0.82900 1.27700 8.49000 WF EE 1 0.62600 1.10429 6.46000 VA EE 0 0.35800 1.87564 3.78000 SQ EE 0 0.32400 2.15130 3.44000 LL E- 0 0.22900 2.43780 2.49000 TP -- 0 0.22800 2.43125 2.48000 SV TT 0 0.10900 2.61268 1.29000 AN TT QM -T TR ET L E L E P E R E V E A E N E G T S T S E F E VS ET TE ES VA -- RF -B 0 0.02000 2.60679 0.40000 GT B- 0 0.34200 1.89268 3.62000 SY -B 1 0.74700 1.47541 7.67000 TT -- 1 0.72900 1.46739 7.49000 ES -- 1 0.67900 1.19810 6.99000 AE -- 1 0.56300 1.73684 5.83000 AH -- 1 0.53500 1.69883 5.55000 VP T- 0 0.18700 2.18272 2.07000 GE TS 1 0.49200 1.17503 5.12000 AG -S 1 0.60900 1.68375 6.29000 AF EE 1 0.75500 1.35317 7.75000 VY EE 1 0.83500 1.15380 8.55000 CN EE 1 0.82000 1.30932 8.40000 RW EE 1 0.68000 1.57517 7.00000 S E G E R T T T T T GH ET YH ET 0 0.21200 1.95782 2.32000 QG EE 1 0.53400 1.61501 5.54000 CA EE 1 0.77900 1.38955 7.99000 GV EE 1 0.82200 1.24778 8.42000 TQ EE 1 0.82600 1.14773 8.46000 IY EE 1 0.81300 1.34551 8.33000 TS EE 1 0.66200 1.47137 6.82000 AG ET 0 0.35500 2.05287 3.75000 K E N E V E T E A E N E Y E A T E T G E A E V E R E G E L E TG ET 0 0.00000 2.46690 0.12000 QR EE 0 0.38800 1.77787 4.08000 GF EE 1 0.73100 1.11096 7.51000 NT -E 1 0.67700 1.20847 6.97000 AI -E 0 0.41900 1.71211 4.39000 P E R T G T CV -S 0 0.07200 1.98799 0.92000 MG -- 1 0.58300 1.53450 6.03000 GG B- 1 0.71800 1.33233 7.38000 RR TT 1 0.79300 1.04555 8.13000 GG TT 1 0.73800 1.27107 7.58000 DD -- 1 0.83600 1.02025 8.56000 SS TT 1 0.89700 0.70100 9.17000 GG TT 1 0.84100 1.16423 8.61000 GR -- 1 0.84500 1.20622 8.65000 SP EE 1 0.82400 1.17715 8.44000 WI EE 1 0.82500 1.27000 8.45000 IM EE 1 0.88200 1.08351 9.02000 TD -- 1 0.88200 0.93768 9.02000 SN TS 1 0.74000 1.30824 7.60000 AS TS 1 0.73000 1.06290 7.50000 GG SS 1 0.76500 1.27637 7.85000 QR B- 1 0.76500 1.45243 7.85000 AV EE 1 0.84400 1.14046 8.64000 QV EE 1 0.83500 1.24191 8.55000 GA EE 1 0.76500 1.47996 7.85000 VI EE 1 0.85700 1.18320 8.77000 MV EE 1 0.86500 1.07301 8.85000 SL EE 1 0.88400 0.98018 9.04000 GG EE 1 0.94000 0.74551 9.60000 GG EE 1 0.74100 0.60186 7.61000 NA -E 0 0.22300 1.72630 2.43000 VD -E Q - S T N T G S N B N S C T G T I S PE -E AG GT ST GT 0 0.02000 2.10447 0.40000 QR GE 1 0.51200 1.37147 5.32000 RT -E 1 0.80100 1.21284 8.21000 SA -E 1 0.78800 1.12285 8.08000 SL EE 1 0.77000 1.35052 7.90000 LS EE 1 0.73400 1.48713 7.54000 FV EE 1 0.78700 1.21811 8.07000 EV EE 1 0.89600 0.64338 9.16000 RT EE 1 0.54100 0.77694 5.61000 W E N - S S K S LG HS QK H- 0 0.04800 1.85239 0.68000 PT H- 1 0.45700 1.72682 4.77000 II HE 1 0.84500 1.18927 8.65000 LK HE 1 0.85000 1.25440 8.70000 ST HE 1 0.85200 1.25731 8.72000 QT HE 1 0.78200 1.35378 8.02000 YP H- 1 0.52500 1.73520 5.45000 GE TS 1 0.47900 1.82762 4.99000 LG -S 0 0.36700 2.05601 3.87000 ST E- 1 0.60900 1.44564 6.29000 LE EE 1 0.73900 1.38360 7.59000 VE -E 1 0.84400 1.20584 8.64000 T - *