% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1ppi.ent 1ppi.1 { _ 404 _ to _ 496 _ 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 } /disk3/pdb/pdb1cdg.ent 1cdg.1 { _ 383 _ to _ 495 _ 0.26792 -0.22888 -0.93587 49.92339 0.37059 -0.87215 0.31937 92.22151 -0.88934 -0.43240 -0.14884 92.93861 } % Reading block file... Blocfile read: Length: 126 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 126 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 122 % The alignment: >1ppi.1 (cluster A) sequence >1cdg.1 (cluster B) sequence >space >1ppi.1_dssp (cluster A) secondary structure from DSSP >1cdg.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * T S S - T S T H A H Y H Q H V H I H Q H K H L H A T P T L H R H K H C H N - P H A H I H A H Y H EG -- 1 0.84300 1.33337 8.63000 PS -E 1 0.89400 1.06135 9.14000 FT EE 1 0.88300 0.93091 9.03000 AQ EE 1 0.71200 1.41158 7.32000 NE EE 1 0.51300 1.90459 5.33000 WR EE 1 0.57400 1.82132 5.94000 WW EE 1 0.70800 1.46248 7.28000 DI EE 1 0.83700 1.08024 8.57000 N - GN S- 0 0.30500 1.79277 3.25000 SN SS 1 0.71500 1.06985 7.35000 ND SS 1 0.89400 1.11250 9.14000 QV EE 1 0.91900 0.92917 9.39000 VL EE 1 0.91200 0.93761 9.32000 AI EE 1 0.92400 0.81034 9.44000 FY EE 1 0.94100 0.74435 9.61000 GE EE 1 0.92300 0.62047 9.43000 RR EE 1 0.84800 1.01871 8.68000 GK TE F - G S S S NN TE RV TE 0 0.31700 0.84956 3.37000 GA EE 1 0.90300 0.99373 9.23000 FV EE 1 0.93000 0.56560 9.50000 IV EE 1 0.92700 0.80151 9.47000 VA EE 1 0.91400 0.85163 9.34000 FV EE 1 0.91600 0.92948 9.36000 NN EE 1 0.92700 0.95519 9.47000 NR -- 1 0.82200 1.03887 8.42000 N - DL SS 0 0.16100 2.25578 1.81000 DN SS 1 0.51800 1.54821 5.38000 WA S- 1 0.82900 1.15861 8.49000 QP -- 1 0.90800 1.01868 9.28000 LA EE 1 0.89400 1.10642 9.14000 SS EE 1 0.89400 1.14521 9.14000 SI EE 1 0.83300 1.06704 8.53000 S - TG E- 0 0.34800 1.84500 3.68000 LL E- 1 0.68600 0.96782 7.06000 QV EB 1 0.85900 1.06515 8.79000 TT -- 1 0.76900 1.41527 7.89000 GS -S 1 0.80200 1.35732 8.22000 LL S- 1 0.89200 0.99127 9.12000 PP -- 1 0.91000 0.98623 9.30000 GQ SS 1 0.87100 1.02650 8.91000 GG EE 1 0.90100 0.75763 9.21000 TS EE 1 0.91700 0.95793 9.37000 YY EE 1 0.92500 0.99101 9.45000 CN E- 1 0.90200 1.01737 9.22000 DD -- 1 0.89500 0.83737 9.15000 VV TT 1 0.85900 0.96364 8.79000 IL TT 1 0.79900 1.22861 8.19000 SG TT GG -T D - K E V E G T N T SL ET CL ET TN SS GG S- 0 0.00000 2.84254 0.04000 IN -- 0 0.26100 1.94251 2.81000 KT E- 1 0.64700 1.62891 6.67000 VL EE 1 0.80900 1.22475 8.29000 YS EE 1 0.89700 1.02644 9.17000 VV EE 1 0.93000 0.79435 9.50000 SG -- 1 0.92500 0.86742 9.45000 SS TG 1 0.89700 0.79308 9.17000 DG TG 1 0.86600 1.07786 8.86000 GG SG 1 0.89600 0.98569 9.16000 TA EB 1 0.83500 1.29534 8.55000 A B AS E- 1 0.50600 1.86192 5.26000 QN E- 1 0.67700 1.57636 6.97000 FF EE 1 0.59000 1.69164 6.10000 ST EE 1 0.77700 1.10712 7.97000 IL EE 1 0.81100 1.35210 8.31000 SA -- 1 0.76400 1.43690 7.84000 N T S T A S EA ST DG ST 0 0.04200 2.43550 0.62000 PG -- 0 0.35400 1.03900 3.74000 FT EE 1 0.91600 1.02479 9.36000 IA EE 1 0.92600 0.96641 9.46000 AV EE 1 0.93000 0.87443 9.50000 IW EE 1 0.94100 0.66463 9.61000 HQ EE 1 0.94200 0.56401 9.62000 AY GE 1 0.49800 0.72748 5.18000 ET GE 1 0.48800 1.87111 5.08000 SA G- 1 0.69400 1.30695 7.14000 K B *