% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1plq.ent 1plq.1 { _ 1 _ to _ 126 _ 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 } /disk3/pdb/pdb2pol.ent 2pola.1 { A 1 _ to A 122 _ 0.83181 -0.52161 0.18977 13.00571 0.10688 0.48602 0.86738 -64.93705 -0.54468 -0.70122 0.46003 32.78506 } % Reading block file... Blocfile read: Length: 138 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 138 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 138 % The alignment: >1plq.1 (cluster A) sequence >2pola.1 (cluster B) sequence >space >1plq.1_dssp (cluster A) secondary structure from DSSP >2pola.1_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * M - LM E- 1 0.79300 1.43763 8.13000 EK EE 1 0.73600 1.51278 7.56000 AF EE 1 0.85200 1.21283 8.72000 KT EE 1 0.87600 1.23839 8.96000 F E EV SE 0 0.14100 2.35089 1.61000 EE SE 1 0.49500 1.66314 5.15000 AR HH 1 0.80200 1.09924 8.22000 SE HH 1 0.77700 1.37533 7.97000 LH HH 1 0.74200 1.34505 7.62000 FL HH 1 0.79300 0.97511 8.13000 KL HH 1 0.72700 1.48509 7.47000 RK HH 1 0.74200 1.51830 7.62000 IP HH 1 0.82300 1.26454 8.43000 IL HH 1 0.89300 0.92051 9.13000 DQ HH 1 0.89000 1.12592 9.10000 GQ HH 1 0.85100 1.12572 8.71000 FV HH 1 0.76900 1.36325 7.89000 KS TT 1 0.58800 1.51552 6.08000 DG TS 0 0.29200 2.02020 3.12000 CP TS 1 0.49900 1.56340 5.19000 L - G - G S R - P - T - L S P G I G VL -G 0 0.00000 2.58719 0.00000 QG SG 0 0.30100 1.61360 3.21000 LN EE 1 0.63400 1.49056 6.54000 VL EE 1 0.85100 1.13387 8.71000 NL EE 1 0.90100 1.09978 9.21000 FL EE 1 0.86700 1.12673 8.87000 QQ EE 1 0.86700 1.12289 8.87000 CV EE 1 0.87600 1.10479 8.96000 KA EE 1 0.74600 1.43296 7.66000 ED TT 0 0.38400 1.79251 4.04000 DG TT 0 0.26200 1.83963 2.82000 GT EE 1 0.52100 1.43423 5.41000 IL EE 1 0.80900 1.28821 8.29000 IS EE 1 0.83200 1.33600 8.52000 AL EE 1 0.75700 1.52716 7.77000 QT EE 1 0.82700 1.38177 8.47000 AG EE 1 0.84400 1.32506 8.64000 VT EE 1 0.87500 1.08814 8.95000 D - D T SD T- 0 0.13400 2.27188 1.54000 RL SS 0 0.37200 1.75339 3.92000 VE SS 1 0.57800 1.77902 5.98000 LM EE 1 0.69500 1.37452 7.15000 LE EE 1 0.87400 0.86527 8.94000 VM EE 1 0.92800 0.83095 9.48000 SV EE 1 0.87200 0.86798 8.92000 LA EE 1 0.78000 1.34962 8.00000 ER EE 1 0.81800 1.37196 8.38000 IV EE 1 0.78400 1.49798 8.04000 GA EE 1 0.72500 1.60462 7.45000 V G E G A G FL S- QV S- 0 0.27600 2.12694 2.96000 EQ ES 1 0.57000 1.22934 5.90000 YP E- 1 0.76200 1.38318 7.82000 RH -- 1 0.73400 1.54621 7.54000 C - D S HE SB 0 0.12800 2.38094 1.48000 PP -- 0 0.40200 1.67002 4.22000 VG EE 1 0.69100 1.16765 7.11000 TA EE 1 0.82000 1.14886 8.40000 LT EE 1 0.87800 0.47569 8.98000 GT EE 1 0.84000 1.00723 8.60000 MV EE 1 0.75500 1.46655 7.75000 DP EE 1 0.77000 1.45384 7.90000 LA HH 1 0.87300 0.99393 8.93000 TR HH 1 0.86200 1.22539 8.82000 SK HH 1 0.78800 1.39523 8.08000 LF HH 1 0.81900 1.16126 8.39000 SF HH 1 0.75700 1.27524 7.77000 KD HH 1 0.62900 1.65100 6.49000 II HH 1 0.79400 1.28081 8.14000 LC TH 1 0.72800 1.44443 7.48000 RR TH 1 0.64400 1.55954 6.64000 CG -H 1 0.63600 1.68186 6.56000 GL SS 1 0.71200 1.50491 7.32000 NP T- 1 0.76200 0.92666 7.82000 NE TT 1 0.70100 1.40730 7.21000 TG TT 1 0.84400 1.13477 8.64000 DA S- 1 0.88100 1.16354 9.01000 TE EE 1 0.87000 1.13896 8.90000 LI EE 1 0.87700 1.09818 8.97000 TA EE 1 0.90200 1.08212 9.22000 LV EE 1 0.86300 1.20206 8.83000 IQ EE 1 0.82800 1.14886 8.48000 AL EE 1 0.65500 1.36252 6.75000 D - N S TE SE PG -T 0 0.15200 1.62686 1.72000 DE ST 1 0.78400 0.82137 8.04000 SR EE 1 0.88200 1.09292 9.02000 IM EE 1 0.91000 1.06042 9.30000 IL EE 1 0.90100 1.13537 9.21000 LV EE 1 0.90600 1.10687 9.26000 LR EE 1 0.89100 1.15804 9.11000 FS EE 1 0.87700 1.11467 8.97000 E E D - T S K S K S D S RG -T 0 0.01400 2.16861 0.34000 IR ET 1 0.51600 1.01604 5.36000 AS EE 1 0.91200 0.99074 9.32000 ER EE 1 0.89500 1.13875 9.15000 YF EE 1 0.91300 1.02786 9.33000 SS EE 1 0.90800 1.06898 9.28000 LL EE 1 0.90300 1.02330 9.23000 KS EE 1 0.90300 0.93942 9.23000 LT -- 1 0.90500 0.83467 9.25000 ML BB 1 0.80800 1.23798 8.28000 DP -- 1 0.59300 1.64249 6.13000 IA -G 0 0.35100 2.13688 3.71000 A G DD -G 0 0.32100 1.24188 3.41000 AF -S 0 0.24300 2.18567 2.63000 DP -- 0 0.25500 2.33283 2.75000 FN -- 0 0.36600 2.14498 3.86000 L - D - D - *