% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1otf.ent 1otfa { CHAIN A 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 } /disk3/pdb/pdb1otg.ent 1otga { CHAIN A 0.18161 -0.95626 0.22931 71.11354 -0.43467 -0.28723 -0.85357 36.69244 0.88209 0.05533 -0.46783 -43.77059 } % Reading block file... Blocfile read: Length: 130 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 130 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 127 % The alignment: >1otfa (cluster A) sequence >1otga (cluster B) sequence >space >1otfa_dssp (cluster A) secondary structure from DSSP >1otga_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * PP -- 1 0.94800 0.69706 9.68000 IH EE 1 0.92200 0.84117 9.42000 AF EE 1 0.91700 0.80140 9.37000 QI EE 1 0.91200 0.58916 9.32000 LV EE 1 0.87800 1.03688 8.98000 YE EE 1 0.87300 1.17429 8.93000 IC EE 1 0.83600 1.31407 8.56000 IS EE ED SG GN -G I G RR -H TE -H DE HH EA HH QD HT 0 0.07000 1.63765 0.90000 KL HH 1 0.63000 1.67873 6.50000 EP HH 1 0.74000 1.44841 7.60000 TG HH 1 0.78100 1.12803 8.01000 LL HH 1 0.76000 1.35262 7.80000 IF HH 1 0.86700 1.25645 8.87000 RA HH 1 0.86900 1.14495 8.89000 QK HH 1 0.86700 1.08257 8.87000 VV HH 1 0.82300 1.32708 8.43000 SN HH 1 0.85700 1.15675 8.77000 EP HH 1 0.77100 1.43180 7.91000 AT HH 1 0.70000 1.63235 7.20000 ML HH 1 0.74100 1.55372 7.61000 AA HH 1 0.77900 1.42280 7.99000 NA HT 1 0.64200 1.72104 6.62000 ST HT 1 0.45000 1.94965 4.70000 LG HS 0 0.06300 2.43108 0.83000 DI TS 0 0.27700 1.40909 2.97000 AF -S 1 0.72800 1.23171 7.48000 PP -- 1 0.76100 1.42691 7.81000 LL GG 1 0.84500 1.25449 8.65000 EA GG 1 0.74800 1.45579 7.68000 RG GG 1 0.79600 1.19518 8.16000 VI -- 1 0.90700 0.53842 9.27000 RR EE 1 0.93800 0.65544 9.58000 VS EE 1 0.91400 0.89539 9.34000 LR EE 1 0.83800 1.14861 8.58000 IV EE 1 0.84900 0.93166 8.69000 TH EE 1 0.89000 0.96127 9.10000 EW EE 1 0.89400 1.11950 9.14000 MV EE 1 0.82300 1.24115 8.43000 P - K G ND GS 0 0.03800 2.47004 0.58000 HT GS 0 0.22100 1.73548 2.41000 FW EE 1 0.50700 1.90833 5.27000 GQ EE 1 0.59700 1.78237 6.17000 IM EE 1 0.67700 1.67352 6.97000 G T GA TT 0 0.15000 1.78097 1.70000 ED ET 1 0.55900 1.61737 5.79000 PG ES 0 0.28400 1.78181 3.04000 AQ T- 0 0.00000 2.76695 0.18000 SH TS 0 0.18900 2.26305 2.09000 D - Y E A E F E V E H E M E T E L E K E I E G - A T G T R - S - L H E H S H R H Q H Q H A H G H E H M H L H F H E H L H I H K H T H H H F T A H A H L H M H E T S T R S L E L E A E L E S E F E E E I E E E E E L - H - P S T S L S N E F E K E Q E N E N G V G H G A G L G F - *