% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1nnc.ent 1nnc { ALL 0.81511 0.57810 0.03742 9.35211 0.11087 -0.21910 0.96938 -9.33587 0.56859 -0.78600 -0.24271 63.64273 } /disk3/pdb/pdb2sil.ent 2sil { ALL 0.99950 -0.02555 -0.01880 2.13184 0.02597 0.99940 0.02274 -2.11157 0.01821 -0.02322 0.99956 0.69343 } % Reading block file... Blocfile read: Length: 480 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 480 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 471 % The alignment: >1nnc (cluster A) sequence >2sil (cluster B) sequence >space >1nnc_dssp (cluster A) secondary structure from DSSP >2sil_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * R - D - F - N - N - L - T - K - G - L B C - T - I - N S S E W E H E IT E- YV E- GE ES 0 0.05100 2.29725 0.71000 KK EE 1 0.53600 1.78868 5.56000 DS -E 1 0.66500 1.72371 6.85000 NV -E A H VV HE RF HE IK H- 0 0.02000 2.42422 0.40000 GA HT 0 0.14500 2.32594 1.65000 EE TT 0 0.12000 2.37845 1.40000 DG S- 0 0.19800 2.40730 2.18000 SE S- 0 0.18400 2.40194 2.04000 H - F - T B D - Q T K T G S N - T B I - V - G - S S G B S G G G DG -G 0 0.04400 2.81383 0.64000 VT BB 0 0.15200 2.40697 1.72000 LT E- 1 0.43700 1.88452 4.57000 K - VY EE 0 0.29900 1.71962 3.19000 TF EE 1 0.74600 1.12656 7.66000 RR EE 1 0.90300 0.79875 9.23000 EI EE 1 0.93200 0.75578 9.52000 PP EE 1 0.79800 1.03969 8.18000 YA EE 1 0.66500 1.54692 6.85000 VM EE 1 0.80900 1.25669 8.29000 SC EE 1 0.83300 1.00721 8.53000 CT EE 1 0.82100 1.15130 8.41000 DT -- 1 0.76300 1.50602 7.83000 PS ST 1 0.77500 1.51786 7.95000 K T DG S- 0 0.23400 2.10425 2.54000 ET -- 1 0.56800 0.98516 5.88000 CI EE 1 0.78900 1.10161 8.09000 RV EE 1 0.76000 1.33235 7.80000 FV EE 1 0.82300 1.40345 8.43000 YF EE 1 0.82700 1.25486 8.47000 AA EE 1 0.88900 0.79544 9.09000 LD EE 1 0.90400 1.00312 9.24000 SA EE 1 0.88800 0.98050 9.08000 QR EE 1 0.71400 1.24217 7.34000 GH ES T E T E I S R S G S K G H G S G N T GN TS TT T- 0 0.42500 0.98270 4.45000 IA TS 1 0.63700 1.49709 6.57000 HS -- 1 0.77600 0.97323 7.96000 DD SS 1 0.72800 0.88711 7.48000 RQ -S 0 0.42700 1.79499 4.47000 SS -S 1 0.46800 1.83538 4.88000 Q T YF T- 0 0.33300 1.68676 3.53000 RI -E 1 0.76900 1.19600 7.89000 AD EE 1 0.79400 1.44036 8.14000 LT EE 1 0.83200 1.37265 8.52000 IA EE 1 0.82400 1.34813 8.44000 SA EE 1 0.84800 1.05326 8.68000 WA EE 1 0.76700 0.96589 7.87000 R E S E T S D S PG ES 0 0.00000 2.99642 0.00000 LG TS 0 0.09800 1.86947 1.18000 SK TS 0 0.26700 2.14649 2.87000 ST SS 0 0.38000 2.00777 4.00000 P - P - T B V T YW T- 0 0.00000 3.24896 0.00000 NN TE 0 0.05700 2.01440 0.77000 SK -E 1 0.55900 1.50770 5.79000 RK EE 1 0.60900 1.71999 6.29000 VI EE 1 0.70000 1.66343 7.20000 EA EE 1 0.70700 1.64385 7.27000 CI EE 1 0.68500 1.53858 7.05000 Y - N - D - R - V S N S S T K T L T S - IR EE 0 0.00000 2.53146 0.01000 GV -E 0 0.31200 1.03499 3.32000 WM SE 1 0.77900 1.23420 7.99000 SD EE 1 0.70300 1.50771 7.23000 SP EE 1 0.77900 1.46611 7.99000 TT EE 1 0.87400 1.12674 8.94000 SC EE 1 0.81200 1.28685 8.32000 CI EE 1 0.77500 1.21316 7.95000 HV EE 1 0.74800 1.42240 7.68000 DA -E 1 0.80100 1.11835 8.21000 N E I E Q T G T GR SE 0 0.04500 2.25275 0.65000 KE SE 1 0.52500 1.47870 5.45000 TT -E 1 0.77700 1.31566 7.97000 RI EE 1 0.79400 1.39688 8.14000 ML EE 1 0.85800 1.30753 8.78000 SV EE 1 0.84000 1.34622 8.60000 IM EE 1 0.88000 1.14645 9.00000 CV EE 1 0.82900 1.32050 8.49000 IG EE 1 0.87500 1.03227 8.95000 SK EE 1 0.86600 0.79992 8.86000 GW SE PN -S N S N - D - K S T - W G G G A G Y - R - D S K S A S P S ND T- NT TT ND ST 0 0.22100 1.81168 2.41000 AW -- 1 0.70800 1.09194 7.28000 SD EE 1 0.85600 1.09350 8.76000 AL EE 1 0.87000 0.84748 8.90000 VV EE 1 0.80600 1.33738 8.26000 IL EE 1 0.79700 1.45834 8.17000 WY EE 1 0.73900 1.57612 7.59000 YK EE 1 0.57200 1.84314 5.92000 S E T S D S D T G T V S T - NF T- 0 0.00000 2.48815 0.00000 RS TE 0 0.35400 1.38871 3.74000 RK EE 1 0.59000 1.71452 6.10000 PV E- 1 0.71900 1.53790 7.39000 VE E- 1 0.81300 1.26530 8.33000 TT E- 1 0.49100 0.99249 5.11000 EN ES 0 0.16900 2.21796 1.89000 II EH 1 0.55000 1.74769 5.70000 NH EH TD -H I H V H T H K H N H WG S- AT SS RI SE NS SE 0 0.15900 2.26367 1.79000 IA -E 0 0.25200 2.25946 2.72000 LM -E 1 0.48000 1.71619 5.00000 RL BE 1 0.74500 1.53184 7.65000 TG -E 1 0.73200 1.37957 7.52000 QG -- 1 0.69700 1.46527 7.17000 EV SS 1 0.71400 1.48991 7.34000 SG SE 1 0.83100 0.96652 8.51000 ES -E 1 0.85200 1.27667 8.72000 CG -- 1 0.88800 1.19660 9.08000 VL -E 1 0.87500 1.22431 8.95000 CQ -E 1 0.74800 1.18820 7.68000 L - HN BT 0 0.30900 2.13018 3.29000 ND TT 0 0.20600 2.27266 2.26000 GG TS 0 0.32100 2.02140 3.41000 VK E- 1 0.65200 1.31222 6.72000 CL EE 1 0.84300 1.11439 8.63000 PV EE 1 0.91700 0.85346 9.37000 VF EE 1 0.89200 0.93817 9.12000 VP EE 1 0.80800 1.33896 8.28000 FV EE 1 0.83600 1.31376 8.56000 TQ EE 1 0.81500 1.25907 8.35000 DM EE 1 0.77200 1.36237 7.92000 GV SE R E T - K T SN -T AI SS TT SS 0 0.00000 3.40218 0.00000 GT S- 0 0.02200 2.36378 0.42000 PV -S 0 0.34800 2.01916 3.68000 AL -E 1 0.50800 1.21389 5.28000 EN EE 1 0.48700 1.81041 5.07000 TT EE 1 0.70700 1.68309 7.27000 RS EE 1 0.59800 1.71350 6.18000 IF EE 1 0.77000 1.07945 7.90000 YI EE 1 0.92800 0.73595 9.48000 YY EE 1 0.82800 0.39704 8.48000 FS EE 1 0.69100 1.45343 7.11000 KT ES 1 0.69300 1.67620 7.13000 ED TS 1 0.64400 1.65209 6.64000 GG TS KI ES IT ES LW EE 0 0.24800 2.05413 2.68000 KS EE 1 0.64600 1.55838 6.66000 WL E- 1 0.85000 1.12103 8.70000 EP E- 1 0.60700 1.16615 6.27000 PS ES 0 0.27300 2.12942 2.93000 LG -- 0 0.31600 2.21706 3.36000 AY -- 0 0.32600 2.18199 3.46000 G S T S AC -E 0 0.08100 2.35675 1.01000 KE SE 1 0.49000 1.68543 5.10000 HG -- 0 0.38500 1.33365 4.05000 F T IG -T 0 0.06900 2.31403 0.89000 ES E- 0 0.31000 1.46282 3.30000 EE E- 1 0.80300 1.47862 8.23000 CN EE 1 0.70300 1.40967 7.23000 SN EE 1 0.47700 1.86180 4.97000 CI EE 0 0.36500 2.17203 3.85000 YI EE 0 0.30800 2.32013 3.28000 GE EE 0 0.24500 2.37130 2.65000 EF E- 0 0.09500 2.69855 1.15000 RN TS 0 0.09600 2.75186 1.16000 AA TS 0 0.09500 2.74343 1.15000 ES E- 0 0.14700 2.60074 1.67000 IL EE 0 0.24400 2.41056 2.64000 TV EE 0 0.37700 2.20116 3.97000 CN EE 1 0.47300 1.99461 4.93000 TN EE 1 0.69400 1.54233 7.14000 CI EE 1 0.66300 1.51178 6.83000 RR E- 1 0.70300 0.97864 7.23000 D - N - W S QN S- 0 0.12700 2.37342 1.47000 GS -S 0 0.19200 2.20739 2.12000 SG SS 1 0.53400 1.41290 5.54000 NL SB 1 0.81800 1.40547 8.38000 RR -- 1 0.82000 1.26738 8.40000 PR EB 1 0.72500 1.48535 7.45000 VS E- 1 0.56800 1.67444 5.88000 IF EE 0 0.30000 2.22008 3.20000 RE EE 0 0.31900 2.22193 3.39000 IT EE 0 0.14100 2.58847 1.61000 DK ES PD TS V T A T MF TT TG ET HK ES 0 0.00400 2.72535 0.24000 TT E- 0 0.17600 2.49452 1.96000 SW E- 0 0.34700 2.15601 3.67000 QT EE 0 0.31300 2.28706 3.33000 E E F - P T YP ET IM -T 0 0.10200 1.58258 1.22000 CD -T 0 0.26100 1.97986 2.81000 SK -T 0 0.18800 2.32321 2.08000 P S VK S- 0 0.19400 2.19777 2.14000 LV -- 1 0.46800 1.71706 4.88000 TD -B 1 0.54200 1.67768 5.62000 DN S- N S P S R - P - N - D - P - T S V S G - K - C S N S D S P - Y - P - G S N - NR -- NN ST 0 0.00000 2.79339 0.02000 NH -T 0 0.22600 1.46911 2.46000 GG -- 1 0.81400 1.19994 8.34000 VV -- 1 0.90000 0.71554 9.20000 KQ -- 1 0.91700 0.80879 9.37000 GG -- 1 0.74500 1.14251 7.65000 FS -E 1 0.48900 1.77891 5.09000 ST EE 0 0.39600 2.07402 4.16000 YI EE 0 0.18200 2.34281 2.02000 LT -E I E P E S E G T DN -T GK TE VL TE 0 0.00000 3.09720 0.00000 NV SE 0 0.10300 2.26049 1.23000 TA -E 0 0.27400 2.35031 2.94000 WA EE 0 0.34800 2.25308 3.68000 LH EE 0 0.38500 2.19921 4.05000 GS EE 1 0.52900 1.95536 5.49000 RS EE 1 0.45100 2.02053 4.71000 TA -E 1 0.61700 1.62478 6.37000 IQ S- 1 0.52800 1.89507 5.48000 SN -- 1 0.43600 1.79568 4.56000 IK ST 0 0.42300 1.85779 4.43000 N T N S D S AY ST ST ST 0 0.22700 1.86166 2.47000 RR S- 1 0.71100 0.93000 7.31000 SS E- 1 0.86700 1.12136 8.87000 GD E- 1 0.66500 1.39651 6.85000 YI EE 1 0.56800 1.69895 5.88000 ES EE 1 0.63100 1.81141 6.51000 ML EE 1 0.60600 1.81222 6.26000 LY EE 1 0.45100 2.08690 4.71000 KA EE 0 0.39000 2.17872 4.10000 VH -E 0 0.24200 2.39895 2.62000 P T N T AN T- 0 0.19800 2.37523 2.18000 LL TT 0 0.26700 2.36705 2.87000 TY TT 0 0.12400 2.63651 1.44000 DS -T 0 0.20200 2.43507 2.22000 D T K T SG -- KE -- 0 0.10000 2.57556 1.20000 PV -E 0 0.16300 2.41690 1.83000 TK SE 0 0.25800 2.35671 2.78000 QL EE 0 0.14400 2.47551 1.64000 GI EE 0 0.35800 1.96681 3.78000 QD EE 1 0.65400 1.62011 6.74000 TD EE 1 0.66700 1.69160 6.87000 IF EE 1 0.80300 1.28901 8.23000 VY EE 1 0.74700 1.55011 7.67000 L E N E TP E- 0 0.00000 2.55130 0.19000 DK ES 0 0.28900 1.40168 3.09000 WV E- 0 0.35000 1.70302 3.70000 G - N - A T S T G S SA -- 0 0.01500 2.42343 0.35000 GG -- 0 0.32500 0.97588 3.45000 YY -- 1 0.87700 0.97000 8.97000 SS EE 1 0.75100 1.41188 7.71000 GC EE 1 0.68300 1.64578 7.03000 SL EE 1 0.72300 1.59621 7.43000 FS EE 1 0.74100 1.40434 7.61000 MY EE 1 0.71700 1.32632 7.37000 DR -E 1 0.48900 1.54691 5.09000 YK TE WN TE A S E S GV ST ED ST CK SE YE BE 0 0.10300 2.42774 1.23000 RT -E 0 0.29000 2.21728 3.10000 AL EE 1 0.45800 2.09900 4.78000 CY EE 1 0.52600 1.98583 5.46000 FV EE 1 0.58400 1.79624 6.04000 YV EE 1 0.61200 1.71470 6.32000 VY EE 1 0.62900 1.62623 6.49000 EE EE 1 0.72100 1.34392 7.41000 LA EE 1 0.79300 1.17734 8.13000 I E R E G E R T P T K T E S D T K T V S W S W - TN ET 0 0.00000 2.63720 0.00000 SG ET 0 0.25000 1.38239 2.70000 NS EE 1 0.53300 1.44041 5.53000 SI EE 1 0.54600 1.56684 5.66000 IE EE 1 0.71100 1.14594 7.31000 VF EE 1 0.61600 1.70193 6.36000 SQ EE D E L - MS EG CR EG 0 0.02400 2.51382 0.44000 SH EG 0 0.36500 1.83833 3.85000 SL EH 1 0.54900 1.69582 5.69000 T S EP SH 0 0.22900 2.29256 2.49000 FV -H 0 0.25400 2.18763 2.74000 LI -H 0 0.00000 0.00000 0.00000 GK -H 0 0.00000 0.00000 0.00000 QS -T 0 0.00000 0.00000 0.00000 WY -- 0 0.00000 0.00000 0.00000 D - W - P - D - G - A - K - I G E G Y G F G *