% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1irk.ent 1irk { ALL 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 } /disk3/pdb/pdb2cpk.ent 2cpke { CHAIN E 0.57780 -0.38080 -0.72188 7.85447 0.35816 0.91307 -0.19497 57.15617 0.73338 -0.14589 0.66399 13.13751 } % Reading block file... Blocfile read: Length: 383 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 383 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 360 % The alignment: >1irk (cluster A) sequence >2cpke (cluster B) sequence >space >1irk_dssp (cluster A) secondary structure from DSSP >2cpke_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * V - K H E H F H L H A H K H A H K H E H D H F H L H K H K H W H SE -H 0 0.00000 0.00000 0.00000 ST -S 0 0.00000 0.00000 0.00000 VP -- 0 0.05400 2.23457 0.74000 FS -- 1 0.48300 1.67626 5.03000 V - P - D G EQ G- WN G- 0 0.00000 3.15426 0.00000 ET B- 0 0.09600 2.05302 1.16000 VA -- 0 0.21400 2.32321 2.34000 SQ -- 0 0.03700 2.79146 0.57000 RL GG 0 0.13700 2.52567 1.57000 ED GG 0 0.09800 2.63076 1.18000 KQ GG 0 0.17000 2.42050 1.90000 IF EE 1 0.44700 1.93013 4.67000 TD EE 1 0.66900 1.72156 6.89000 LR EE 1 0.67600 1.62628 6.96000 LI EE 1 0.83500 1.09492 8.55000 RK EE 1 0.88800 1.12671 9.08000 ET EE 1 0.81300 1.36721 8.33000 LL EE 1 0.76800 1.41312 7.88000 GG EE 1 0.52900 1.77221 5.49000 QT EE 0 0.38100 1.89789 4.01000 GG -- 0 0.22200 2.31558 2.42000 SS SS 0 0.13100 2.59816 1.51000 FF SS 0 0.15400 2.45964 1.74000 GG SE 0 0.41500 1.89976 4.35000 MR EE 1 0.57800 1.78720 5.98000 VV EE 1 0.75900 1.35741 7.79000 YM EE 1 0.86100 1.08707 8.81000 EL EE 1 0.84200 0.82366 8.62000 GV EE 1 0.69100 1.48828 7.11000 NK EE 1 0.63900 1.72388 6.59000 AH EE R E D E I E I E K T GK TT EE ET AS ET 0 0.00000 2.66407 0.01000 EG ET 0 0.26700 2.23510 2.87000 TN EE 1 0.45400 1.99175 4.74000 RH EE 1 0.60300 1.77169 6.23000 VY EE 1 0.75300 1.38319 7.73000 AA EE 1 0.84400 0.84136 8.64000 VM EE 1 0.81000 1.20624 8.30000 KK EE 1 0.74900 1.49464 7.69000 TI -E 1 0.64100 1.70584 6.61000 VL -E 1 0.44300 1.92478 4.63000 ND -E EK TH SQ TH AK -H SV -H LV HH RK HH L T K T EQ H- RI HH IE HH EH HH FT HH LL HH NN HH EE HH 0 0.14200 2.14394 1.62000 AK HH 0 0.36700 1.83701 3.87000 SR HH 0 0.28300 2.15283 3.03000 VI HH 0 0.34300 1.82778 3.63000 ML HH 1 0.67500 0.80825 6.95000 KQ TH 1 0.80200 1.30848 8.22000 GA TH 1 0.81100 1.17491 8.31000 FV -- 1 0.80200 1.16347 8.22000 TN -- 1 0.92500 0.78622 9.45000 CF -- 1 0.94500 0.77846 9.65000 HP TT 1 0.88500 0.81179 9.05000 HF TT 1 0.83500 1.15413 8.55000 VL BB 1 0.88100 1.11507 9.01000 VV -- 1 0.84600 1.30604 8.66000 RK -- 1 0.84100 1.27104 8.61000 LL EE 1 0.80500 1.11678 8.25000 LE EE 1 0.65000 1.66190 6.70000 GF EE 1 0.48700 1.82760 5.07000 VS EE 0 0.35500 2.03232 3.75000 VF EE 0 0.13300 2.40898 1.53000 SK -E KD S- GN SS QS SS 0 0.00000 3.11691 0.05000 PN SE 0 0.06200 2.75261 0.82000 TL -E 0 0.12700 2.60028 1.47000 LY EE 0 0.31400 2.14475 3.34000 VM EE 1 0.58800 1.63426 6.08000 VV EE 1 0.71700 1.41350 7.37000 MM EE 1 0.84600 1.03016 8.66000 EE EE 1 0.83500 1.31740 8.55000 LY -- 1 0.84600 1.32336 8.66000 MV -- 1 0.78000 1.41399 8.00000 AA TT 1 0.70000 1.37684 7.20000 HG TT 1 0.63600 1.48978 6.56000 GG -- 1 0.73200 1.47780 7.52000 DE BB 1 0.82600 1.41090 8.46000 LM HH 1 0.83700 1.33312 8.57000 KF HH 1 0.80700 1.35685 8.27000 SS HH 1 0.70100 1.49239 7.21000 YH HH 1 0.64600 1.52880 6.66000 LL HH 1 0.85300 0.88577 8.73000 RR HH 1 0.88100 0.91434 9.01000 SR HH 1 0.76400 1.42803 7.84000 LI TH 1 0.73300 1.23501 7.53000 R S P T E T A - E T N T N - P - G S R - PG -- 0 0.00000 2.90854 0.18000 PR S- 0 0.17600 2.19748 1.96000 PF -- 1 0.56600 1.80635 5.86000 TS -- 1 0.63200 1.78292 6.52000 LE HH 1 0.70600 1.54353 7.26000 QP HH 1 0.80100 1.36332 8.21000 EH HH 1 0.83400 1.29776 8.54000 MA HH 1 0.85600 1.17049 8.76000 IR HH 1 0.91400 0.91474 9.34000 QF HH 1 0.89200 0.99330 9.12000 MY HH 1 0.92900 0.55321 9.49000 AA HH 1 0.95100 0.61743 9.71000 AA HH 1 0.94700 0.62974 9.67000 EQ HH 1 0.91700 0.72460 9.37000 II HH 1 0.83500 1.20240 8.55000 AV HH 1 0.81700 1.32795 8.37000 DL HH 1 0.88100 1.16432 9.01000 GT HH 1 0.89500 1.12083 9.15000 MF HH 1 0.85700 1.29832 8.77000 AE HH 1 0.87100 1.26732 8.91000 YY HH 1 0.87500 1.23296 8.95000 LL HH 1 0.89900 1.11292 9.19000 NH HH 1 0.91200 1.01165 9.32000 AS HH 1 0.87400 1.17789 8.94000 KL TT 1 0.84000 1.32040 8.60000 KD TT 1 0.87300 1.19820 8.93000 FL -E 1 0.86100 1.26414 8.81000 VI -E 1 0.86800 1.24610 8.88000 HY -- 1 0.82000 1.39034 8.40000 RR S- 1 0.81000 1.43446 8.30000 DD -- 1 0.80200 1.38278 8.22000 LL -- 1 0.84100 1.24682 8.61000 AK SS 1 0.87400 1.25549 8.94000 AP GG 1 0.86100 1.29687 8.81000 RE GG 1 0.84500 1.33051 8.65000 NN GG 1 0.79000 1.46607 8.10000 CL EE 1 0.84700 1.31499 8.67000 ML EE 1 0.85800 1.30063 8.78000 VI EE 1 0.88500 1.15542 9.05000 AD -- 1 0.86900 1.10544 8.89000 HQ TT 1 0.79700 1.41330 8.17000 DQ TT 1 0.78600 1.41601 8.06000 FG -S 1 0.78800 1.33119 8.08000 TY -- 1 0.85800 0.95426 8.78000 VI EE 1 0.74100 1.36714 7.61000 KQ EE 1 0.68300 1.58075 7.03000 IV EE 1 0.81600 1.32968 8.36000 GT -- 1 0.78200 1.21601 8.02000 DD -- 0 0.25800 1.69177 2.78000 FF -- 0 0.01000 2.75460 0.30000 GG ST MF -T TA S- RK SE DR SE I T Y T E G T G D G YV -- YK ES RG ES KR G- GT GB GW G- KT S- 0 0.00000 3.49495 0.00000 GL S- 0 0.00000 2.71017 0.15000 LC E- 0 0.07300 2.69991 0.93000 LG EB 0 0.14300 2.31993 1.63000 PT -- 1 0.45000 1.51552 4.70000 VP GG 1 0.73900 1.52731 7.59000 RE GG 1 0.79100 1.38412 8.11000 WY GG 1 0.86500 1.10367 8.85000 ML -- 1 0.88600 1.08835 9.06000 AA -- 1 0.89400 1.13549 9.14000 PP HH 1 0.87700 1.22726 8.97000 EE HH 1 0.88900 1.15133 9.09000 SI HH 1 0.90300 1.07435 9.23000 LI HH 1 0.91000 1.02172 9.30000 KL HT 1 0.89500 0.93231 9.15000 DS HT 1 0.45000 1.17848 4.70000 GK -- 0 0.09900 2.33213 1.19000 VG -- 1 0.45400 1.75758 4.74000 FY -B 1 0.46100 1.91422 4.81000 TN -- 1 0.70200 1.32390 7.22000 TK HT 1 0.86800 1.16718 8.88000 SA HH 1 0.91400 0.86076 9.34000 SV HH 1 0.88900 1.12104 9.09000 DD HH 1 0.87300 1.18178 8.93000 MW HH 1 0.91700 0.89281 9.37000 WW HH 1 0.93600 0.81506 9.56000 SA HH 1 0.91900 0.95318 9.39000 FL HH 1 0.92400 0.90621 9.44000 GG HH 1 0.94300 0.76568 9.63000 VV HH 1 0.93500 0.80629 9.55000 VL HH 1 0.93600 0.78766 9.56000 LI HH 1 0.94000 0.75958 9.60000 WY HH 1 0.90600 0.95304 9.26000 EE HH 1 0.87000 1.12329 8.90000 IM HH 1 0.89700 0.77921 9.17000 TA HH 1 0.78500 1.04732 8.05000 SA HH 1 0.55800 1.56362 5.78000 L T AG SS 0 0.17300 2.12871 1.93000 EY -S 1 0.45700 1.62406 4.77000 QP -- 0 0.31300 2.15053 3.33000 PP TS 0 0.23800 2.05209 2.58000 YF TS 0 0.37700 1.66119 3.97000 QF T- GA T- LD SS SQ -S 0 0.26500 2.12572 2.85000 NP HH 1 0.56600 1.79463 5.86000 EI HH 1 0.65400 1.71153 6.74000 QQ HH 1 0.62200 1.76001 6.42000 VI HH 1 0.67900 1.64419 6.99000 LY HH 1 0.69900 1.55952 7.19000 KE HH 1 0.71100 1.63087 7.31000 FK HH 1 0.73500 1.63331 7.55000 VI HH 1 0.76700 1.52496 7.87000 MV HH 1 0.81700 1.37242 8.37000 DS TH 1 0.75700 1.56042 7.77000 GG T- 1 0.48100 1.70658 5.01000 GK -- 1 0.52700 1.51266 5.47000 Y - LV -- 1 0.50500 1.83416 5.25000 DR -- 1 0.66300 1.48367 6.83000 QF -- 1 0.73000 1.36152 7.50000 PP -- 1 0.55600 1.75768 5.76000 DS ST 1 0.58200 1.71154 6.02000 NH ST 1 0.77700 1.34380 7.97000 CF -S 1 0.70400 1.59010 7.24000 PS -- 1 0.79100 1.44469 8.11000 ES HH 1 0.84400 1.36133 8.64000 RD HH 1 0.83900 1.37619 8.59000 VL HH 1 0.82900 1.35459 8.49000 TK HH 1 0.79800 1.40142 8.18000 DD HH 1 0.87300 1.13789 8.93000 LL HH 1 0.90200 1.04386 9.22000 ML HH 1 0.90200 1.07821 9.22000 RR HH 1 0.91200 1.02087 9.32000 MN HH 1 0.93300 0.77653 9.53000 CL HH 1 0.93000 0.79387 9.50000 WL TS 1 0.91500 0.88442 9.35000 QQ -- 1 0.89700 1.05053 9.17000 FV SS 1 0.82100 1.17240 8.41000 ND S- 1 0.80300 0.94999 8.23000 PL GG 1 0.79800 1.09630 8.18000 KT GG 1 0.73100 1.51704 7.51000 MK GG 1 0.84900 1.28436 8.69000 RR S- 1 0.84000 1.28867 8.60000 F T G T N T L S K T PN -T 0 0.01100 2.84536 0.31000 TG -T 0 0.23100 2.09914 2.51000 FV HT 0 0.35300 2.10202 3.73000 LN HH 0 0.23300 2.28587 2.53000 ED HH 0 0.39500 2.00566 4.15000 II HH 1 0.64700 1.64699 6.67000 VK HH 1 0.49000 1.89285 5.10000 NN HT 0 0.34900 2.12290 3.69000 H S LK HG 0 0.10500 2.54665 1.25000 LW HG 0 0.16700 2.48599 1.87000 KF GG 0 0.21200 2.42778 2.32000 DA GG 0 0.27600 2.15995 2.96000 DT GG 1 0.47400 1.58007 4.94000 LT S- 0 0.34400 1.94833 3.64000 D - HW -H 0 0.00000 2.82679 0.14000 PI TH 0 0.04500 2.65747 0.65000 SA TH 0 0.19600 1.88456 2.16000 FI HH 0 0.35100 1.27091 3.71000 PY HH 0 0.22300 2.02108 2.43000 EQ HT 0 0.32700 1.49450 3.47000 VR HT 1 0.77300 1.55423 7.93000 SK -- 1 0.80400 1.47112 8.24000 FV SS 1 0.78200 1.51065 8.02000 FE T- 1 0.81600 1.40480 8.36000 HA T- 1 0.86800 1.24907 8.88000 SP SS 1 0.88100 1.22700 9.01000 EF TS 1 0.87800 1.22071 8.98000 EI T- 1 0.84500 1.26822 8.65000 NP -- 0 0.00000 0.00000 0.00000 K - F - K - G S P T G T D - T - S T N T F S D - D - Y - E - E - E - E - I - R - V - S - I S N S E - K - C S G T K T E T F T T T E T *