% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1ihs.ent 1ihslh { CHAIN L CHAIN H 0.35801 0.73742 -0.57277 29.28386 0.14491 0.56210 0.81426 -8.83448 0.92235 -0.37451 0.09438 8.67103 } /disk3/pdb/pdb2alp.ent 2alp { ALL 0.23361 -0.96480 0.12043 63.53828 0.84019 0.26266 0.47432 -7.97869 -0.48927 -0.00962 0.87202 12.12762 } % Reading block file... Blocfile read: Length: 313 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 313 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 307 % The alignment: >1ihslh (cluster A) sequence >2alp (cluster B) sequence >space >1ihslh_dssp (cluster A) secondary structure from DSSP >2alp_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * G - E - A T D T C T G T L - R - P T L T F T E G K G K G S T L - E - D - K T T T E H R H E H L H L H E H S H Y - I - I - V B E S G - S E D E A - E - I T GA T- 0 0.00000 0.00000 0.00000 MN SE 0 0.00000 0.00000 0.00000 SI -E 0 0.00000 0.00000 0.00000 PV TE 0 0.02000 2.05299 0.40000 WG TE 1 0.45700 1.81610 4.77000 QG ET 1 0.61800 1.78531 6.38000 VI E- 1 0.58000 1.78405 6.00000 ME EE 1 0.70300 1.34995 7.23000 LY EE 1 0.78800 1.01652 8.08000 FS EE 1 0.51200 1.50891 5.32000 RI EE 0 0.22000 2.17665 2.40000 KN TT 0 0.05400 2.53879 0.74000 SN TT 0 0.18600 2.03611 2.06000 PA TT Q T E E LS EE LL EE 0 0.24500 0.55306 2.65000 CC EE 1 0.93900 0.77194 9.59000 GS EE 1 0.93800 0.58527 9.58000 V - AG E- 1 0.45100 1.86634 4.71000 SF EE 1 0.66400 1.69058 6.84000 LS EE 1 0.68100 1.45700 7.01000 IV -E 1 0.53800 1.65719 5.58000 T E R E G T SA ST DT SE 0 0.00000 2.81282 0.00000 RK SE 0 0.15600 1.31299 1.76000 WG EE 1 0.89500 0.93213 9.15000 VF EE 1 0.90900 0.97540 9.29000 LV EE 1 0.92300 0.92281 9.43000 TT EE 1 0.93200 0.79087 9.52000 AA -- 1 0.94000 0.39662 9.60000 AG GG 1 0.92600 0.84976 9.46000 HH GG 1 0.94100 0.67607 9.61000 CC GG 1 0.92700 0.88369 9.47000 L T L E Y E P G P G W G D T KG E- 0 0.00400 2.61120 0.24000 NT E- 0 0.22100 2.18247 2.41000 FV -T 0 0.04200 2.69819 0.62000 TN -T 0 0.21500 1.96592 2.35000 E G NA G- 0 0.04500 2.47193 0.65000 DT GE 0 0.30500 1.94954 3.25000 LA EE 1 0.55100 1.64241 5.71000 LR EE 1 0.59300 0.85086 6.13000 VI EE R E I E G S K - H - S B R S T S R S Y - E - R T N T I T EG -T KG ET 0 0.00000 3.17303 0.00000 IA EE 0 0.09500 2.21814 1.15000 SV EE 0 0.28000 2.19122 3.00000 MV EE 1 0.56300 1.44388 5.83000 LG EE ET EE K E I E YF EE IA EE HA -E PR TE 0 0.05600 2.42722 0.76000 RV TE 0 0.30300 2.14722 3.23000 YF -- 1 0.50800 1.66338 5.28000 N B W T R T E T N T LP -S 0 0.08500 1.85857 1.05000 DG BB 1 0.55100 1.72051 5.71000 RN TS 1 0.72100 1.23055 7.41000 DD -- 1 0.91100 0.72866 9.31000 IR -E 1 0.93800 0.80158 9.58000 AA EE 1 0.94200 0.73671 9.62000 LW EE 1 0.94800 0.69699 9.68000 MV EE 1 0.93900 0.72935 9.59000 KS EE 1 0.91800 0.88642 9.38000 LL EE 1 0.90900 0.83206 9.29000 KT S- 1 0.84400 1.14513 8.64000 KS ST 1 0.64000 1.11673 6.60000 PA -T 0 0.24100 2.03074 2.61000 VQ -- 0 0.41800 1.60079 4.38000 AT -E 0 0.37600 1.86808 3.96000 FL -E SL BE DP TE R E V E A E N E G T S T YS TE IF BE HV -E PT -E 0 0.00000 2.77373 0.10000 VV -- 0 0.24600 1.86182 2.66000 CR B- 0 0.31400 2.24692 3.34000 LG -B 0 0.22300 2.26562 2.43000 PS -- D - R H E H T H A H A H ST H- LE H- 0 0.16200 2.11355 1.82000 LA -- 1 0.59300 1.39665 6.13000 QA -- 1 0.83800 1.00381 8.58000 AV TT 1 0.86100 1.17663 8.81000 GG TT 1 0.86000 1.13020 8.80000 YA -- 1 0.90900 0.68226 9.29000 KA EE 1 0.90300 0.94229 9.23000 GV EE 1 0.90700 1.02278 9.27000 RC EE 1 0.91400 0.96529 9.34000 VR EE 1 0.92300 0.80729 9.43000 TS EE 1 0.90200 1.03523 9.22000 GG EE 1 0.85200 1.22145 8.72000 WR ST G - N - L S K S E T T T W T T - A S N S V T G T K S G S Q S P - S S VT BT LT -T 0 0.00000 2.64178 0.07000 QG EE 0 0.23400 1.41509 2.54000 VY EE 1 0.87300 1.03858 8.93000 VQ EE 1 0.89800 1.06172 9.18000 NC EE 1 0.88000 1.08291 9.00000 LG EE 1 0.83200 1.12200 8.52000 PT EE 1 0.90600 0.44357 9.26000 II BE 1 0.95400 0.56239 9.74000 VT -E 1 0.77300 0.66999 7.93000 EA -E 1 0.45200 1.68335 4.72000 RK HE 0 0.17300 1.94506 1.93000 PN HE V H C H K H DV TE ST TE 0 0.00000 3.17734 0.00000 TA -E 0 0.04200 2.66908 0.62000 RN SE 0 0.06700 2.61584 0.87000 Y E A T E T IG SE 0 0.00000 2.97588 0.00000 RA -E 0 0.13600 2.42580 1.56000 IV -E 0 0.12700 2.44969 1.47000 TR -E 0 0.41000 1.63621 4.30000 D T NG TE 0 0.15100 1.76048 1.71000 ML EE 1 0.74300 1.01964 7.63000 FT EE 1 0.91800 0.68906 9.38000 CQ EE 1 0.95400 0.56389 9.74000 AG EE 1 0.94200 0.53450 9.62000 G - Y - K - P G D G E G G S K - RN -- 0 0.00000 2.67547 0.13000 GA -- 0 0.16200 2.07827 1.82000 DC B- 1 0.52200 0.70282 5.42000 AM -- 1 0.90400 0.96936 9.24000 CG -B 1 0.88000 1.07155 9.00000 ER TT 1 0.89900 0.86728 9.19000 GG TT 1 0.90800 0.99568 9.28000 DD -- 1 0.94000 0.70195 9.60000 SS TT 1 0.94700 0.72491 9.67000 GG TT 1 0.94500 0.72796 9.65000 GG -- 1 0.95000 0.50029 9.70000 PS EE 1 0.94900 0.58477 9.69000 FW EE 1 0.94700 0.52591 9.67000 VI EE 1 0.90600 0.83543 9.26000 MT E- 1 0.63600 1.28352 6.56000 KS ET 0 0.33500 2.04640 3.55000 S - P T F T N T N - RA -T WG ES 0 0.40300 1.29213 4.23000 YQ EB 1 0.67000 1.59358 6.90000 QA EE 1 0.75000 1.30874 7.70000 MQ EE 1 0.85200 0.82416 8.72000 GG EE 1 0.85200 1.15497 8.72000 IV EE 1 0.92600 0.80405 9.46000 VM EE 1 0.93500 0.82848 9.55000 SS EE 1 0.92400 0.55108 9.44000 WG EE 1 0.90100 0.99235 9.21000 GG -E 1 0.88800 1.00606 9.08000 EN S- 1 0.69100 1.41787 7.11000 GV S- CQ S- S T N T G S N B N S C T G T I S DP S- RA -G DS TG 0 0.20000 2.23475 2.20000 GQ TG 1 0.50700 1.64746 5.27000 KR -- 0 0.42400 1.88047 4.44000 YS -- 1 0.69400 0.95061 7.14000 GS EE 1 0.93800 0.75634 9.58000 FL EE 1 0.93900 0.83990 9.59000 YF EE 1 0.93900 0.71837 9.59000 TE EE 1 0.90700 0.69166 9.27000 HR EE 1 0.88100 1.05404 9.01000 VL TH 1 0.89000 1.07879 9.10000 FQ GH 1 0.79500 1.13465 8.15000 RP GH 1 0.59400 1.70120 6.14000 LI GH 1 0.62000 1.76166 6.40000 KL HH 1 0.64600 1.61533 6.66000 KS HH 1 0.76000 1.13670 7.80000 WQ HH 1 0.75000 0.83770 7.70000 I H QY HH 0 0.35300 2.04790 3.73000 KG HT 0 0.32200 1.70298 3.42000 VL H- 0 0.10700 2.50047 1.27000 IS HE 0 0.00000 0.00000 0.00000 DL HE 0 0.00000 0.00000 0.00000 QV H- 1 0.93200 0.76858 9.52000 FT H- 0 0.21400 0.88613 2.34000 *