% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1hlb.ent 1hlb { ALL 0.80400 -0.52659 -0.27623 26.78974 -0.02534 0.43381 -0.90063 -31.97722 0.59406 0.73113 0.33544 -20.53481 } /disk3/pdb/pdb1hda.ent 1hdab { CHAIN B 0.08551 0.71130 0.69772 -15.19409 -0.79685 -0.37156 0.47642 -9.94249 0.59809 -0.59676 0.53495 -9.23341 } % Reading block file... Blocfile read: Length: 162 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 162 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 158 % The alignment: >1hlb (cluster A) sequence >1hdab (cluster B) sequence >space >1hlb_dssp (cluster A) secondary structure from DSSP >1hdab_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * G - G - T T L T A - I S Q - A - Q - G S DM -- 1 0.72400 1.56781 7.44000 LL S- 1 0.81500 1.15629 8.35000 TT -- 1 0.87500 0.69055 8.95000 LA HH 1 0.81500 1.24659 8.35000 AE HH 1 0.82500 1.31813 8.45000 QE HH 1 0.87700 1.10442 8.97000 KK HH 1 0.86400 1.06688 8.84000 KA HH 1 0.78700 1.36419 8.07000 IA HH 1 0.80500 1.36368 8.25000 VV HH 1 0.86300 1.19974 8.83000 RT HH 1 0.81000 1.39620 8.30000 KA HH 1 0.76300 1.54631 7.83000 TF HH 1 0.78700 1.51298 8.07000 WW HH 1 0.79700 1.49564 8.17000 HG HT 1 0.68600 1.59396 7.06000 QK HT 1 0.73800 1.40016 7.58000 LV H- 1 0.70200 1.60829 7.22000 M H R H NK H- 0 0.11600 2.23541 1.36000 KV -H 0 0.04900 2.68701 0.69000 TD TH 0 0.07600 2.28187 0.96000 SE TH 0 0.31500 1.33120 3.35000 FV HH 1 0.79800 1.29251 8.18000 VG HH 1 0.87700 0.69058 8.97000 TG HH 1 0.89500 0.85183 9.15000 DE HH 1 0.85000 1.15744 8.70000 VA HH 1 0.90500 1.01200 9.25000 FL HH 1 0.92600 0.90831 9.46000 IG HH 1 0.93300 0.91694 9.53000 RR HH 1 0.94000 0.84286 9.60000 IL HH 1 0.94400 0.79455 9.64000 FL HH 1 0.94500 0.76526 9.65000 AV HH 1 0.93400 0.78211 9.54000 YV HH 1 0.91000 0.99683 9.30000 DY -S 1 0.89900 1.11969 9.19000 PP TG 1 0.88800 1.12866 9.08000 SW HG 1 0.85100 1.22604 8.71000 AT HG 1 0.90800 0.90941 9.28000 QQ HG 1 0.89800 1.09404 9.18000 NR HG 1 0.88100 1.16430 9.01000 KF TG 1 0.78100 1.11453 8.01000 FF S- 1 0.68700 1.43595 7.07000 PE GG 1 0.55400 1.76603 5.74000 QS GG 1 0.73400 1.10466 7.54000 MF GG 0 0.38500 1.49060 4.05000 AG T- 0 0.10700 2.41236 1.27000 GD T- 0 0.34400 2.09176 3.64000 L - MS -S 0 0.15500 2.28025 1.75000 ST -S 0 0.37000 2.22879 3.90000 AA HH 0 0.32300 2.31755 3.43000 SD HH 0 0.30500 2.35010 3.25000 QA HH 0 0.30300 2.33377 3.23000 LV HH RM TH SN TH SN -- RP HH 0 0.12700 2.55903 1.47000 QK HH 0 0.28100 2.15633 3.01000 MV HH 1 0.51900 1.79476 5.39000 QK HH 0 0.42300 2.06382 4.43000 AA HH 0 0.38400 2.07682 4.04000 HH HH 1 0.60500 1.62121 6.25000 AG HH 1 0.69700 1.54398 7.17000 IK HH 1 0.65700 1.69728 6.77000 RK HH 1 0.65900 1.53610 6.79000 VV HH 1 0.70300 1.10036 7.23000 SL HH 1 0.60600 1.48493 6.26000 SD HH 1 0.68700 1.42899 7.07000 IS HH 1 0.81400 1.28724 8.34000 MF HH 1 0.82400 1.31565 8.44000 SS HH 1 0.82000 1.33893 8.40000 EN HH 1 0.84900 1.23233 8.69000 YG HH 1 0.76400 1.46132 7.84000 VM HH 1 0.78800 1.32047 8.08000 EK TT 1 0.54700 1.66865 5.67000 EH T- 0 0.22900 2.19570 2.49000 LL -T D - S T DD TT ID S- 0 0.26800 1.98072 2.88000 LL HH 1 0.66800 1.60015 6.88000 PK HH 1 0.57800 1.78015 5.98000 EG HH 1 0.43800 1.97325 4.58000 LT HH 1 0.58400 1.67696 6.04000 LF TH 1 0.75800 1.14360 7.78000 AA HH 1 0.67700 1.55355 6.97000 TA HH 1 0.60000 1.75324 6.20000 LL HH 1 0.75200 1.48174 7.72000 AS HH 1 0.83400 1.26930 8.54000 RE HH 1 0.73200 1.58923 7.52000 TL HH 1 0.64800 1.72299 6.68000 HH HH 1 0.76400 1.46204 7.84000 C H DD HH 0 0.18000 2.32630 2.00000 LK HT 0 0.31700 1.94856 3.37000 NL TT 1 0.55100 1.73247 5.71000 KH T- 1 0.54900 1.75094 5.69000 VV -- 1 0.65300 1.38471 6.73000 GD -- 1 0.47800 1.57140 4.98000 AP HT 0 0.40700 1.77285 4.27000 DE HH 1 0.59200 1.56560 6.12000 HN HH 1 0.83700 0.95081 8.57000 YF HH 1 0.88400 1.08195 9.04000 NK HH 1 0.86000 1.22946 8.80000 LL HH 1 0.89200 1.10397 9.12000 FL HH 1 0.90700 0.83200 9.27000 AG HH 1 0.84800 1.15554 8.68000 KN HH 1 0.84000 1.21961 8.60000 VV HH 1 0.90300 0.99516 9.23000 LL HH 1 0.91200 0.98602 9.32000 MV HH 1 0.91900 0.88608 9.39000 EV HH 1 0.91500 0.87744 9.35000 AV HH 1 0.87400 1.05679 8.94000 LL HH 1 0.87400 1.12040 8.94000 QA HH 1 0.90300 1.01371 9.23000 AR HH 1 0.84500 1.12858 8.65000 EN HH 1 0.73800 1.48226 7.58000 LF HH 1 0.73800 1.54330 7.58000 GG TG 1 0.78800 1.37058 8.08000 SK TG 1 0.68500 1.64429 7.05000 DE -G 1 0.60800 1.81862 6.28000 FF -S 1 0.72700 1.56573 7.47000 NT -- 1 0.72300 1.49263 7.43000 EP TH 1 0.79100 1.32474 8.11000 KV HH 1 0.83200 1.22443 8.52000 TL HH 1 0.86800 0.62389 8.88000 RQ HH 1 0.83000 1.18288 8.50000 DA HH 1 0.84800 1.18806 8.68000 AD HH 1 0.90700 0.98437 9.27000 WF HH 1 0.90900 0.95845 9.29000 AQ HH 1 0.85900 1.21653 8.79000 KK HH 1 0.85200 1.29685 8.72000 AV HH 1 0.83700 1.26451 8.57000 FV HH 1 0.72600 1.52580 7.46000 SA HH 1 0.65800 1.73648 6.78000 VG HH 1 0.70200 1.65236 7.22000 VV HH 1 0.71200 1.59021 7.32000 QA HH 1 0.62300 1.81326 6.43000 AN HH 1 0.52000 1.83945 5.40000 VA TH 1 0.55800 1.74564 5.78000 LL -H LA SH VH -T KR -T HY -- *