% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1glm.ent 1glm { ALL -0.87753 0.46664 -0.11045 70.39742 0.24434 0.23691 -0.94030 20.40837 -0.41261 -0.85213 -0.32192 140.16710 } /disk3/pdb/pdb1clc.ent 1clc.2 { _ 135 _ to _ 574 _ 0.99999 0.00401 0.00236 -0.27239 -0.00401 0.99999 -0.00171 0.38399 -0.00236 0.00170 1.00000 0.10161 } % Reading block file... Blocfile read: Length: 597 % Searching for STAMP data... % 268470112 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 597 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 582 % The alignment: >1glm (cluster A) sequence >1clc.2 (cluster B) sequence >space >1glm_dssp (cluster A) secondary structure from DSSP >1clc.2_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * A - T H LA H- DM HT SN HT WV HT 0 0.15100 2.33703 1.71000 LY HT 1 0.50000 1.60113 5.20000 SE HH 1 0.78200 1.33290 8.02000 ND HH 1 0.76500 1.40633 7.85000 EA HH 1 0.77200 1.27784 7.92000 AF HH 1 0.88400 0.80415 9.04000 TK HH 1 0.87600 0.95970 8.96000 VT HH 1 0.89000 1.05100 9.10000 AA HH 1 0.91500 0.99504 9.35000 RM HH 1 0.92500 0.83208 9.45000 TL HH 1 0.92000 0.94822 9.40000 AG HH 1 0.92800 0.90930 9.48000 IM HH 1 0.92900 0.73068 9.49000 LY HH 1 0.89300 1.10790 9.13000 NL HH 1 0.90600 1.11549 9.26000 NL TT 1 0.88400 1.07768 9.04000 IR BB 1 0.71200 1.33319 7.32000 GC T- 1 0.68500 1.20904 7.05000 G S AT TS 1 0.66000 1.57678 6.80000 DS T- 1 0.55000 1.68665 5.70000 GV -E 0 0.30600 2.04158 3.26000 S E A E T E Y E N T G T I E H E AY TE 0 0.00000 2.63278 0.07000 WS TE 0 0.07300 2.67862 0.93000 VH -E 0 0.05500 2.77645 0.75000 G - SP T- 0 0.05100 2.32562 0.71000 GC T- 0 0.38300 1.76630 4.03000 AH -- 1 0.48500 1.86115 5.05000 T T N T D - A - Y B L - D T Y T I T N T G S Q - H - T - K B K - D - DS -- 0 0.00000 2.36506 0.15000 ST T- 0 0.31600 1.67039 3.36000 GK T- 1 0.54000 1.43657 5.60000 IG -S 1 0.62600 1.56461 6.46000 VW BB 1 0.76500 1.44376 7.85000 VH -- 1 0.82300 1.26345 8.43000 AD S- 1 0.88000 1.04509 9.00000 SA -S 1 0.72400 1.15042 7.44000 PG SS 0 0.40700 1.86500 4.27000 S - T - D S N S P S D - YD -S 0 0.13100 1.90499 1.51000 FY -- 1 0.56200 1.67519 5.82000 YN S- 1 0.79900 1.25203 8.19000 TK EE 1 0.90500 1.03403 9.25000 WY EE 1 0.88400 1.12622 9.04000 TV HH 1 0.78400 0.86416 8.04000 RV HH 1 0.63400 1.53874 6.54000 DN HH 1 0.68400 1.56814 7.04000 SA HH 1 0.70200 1.51876 7.22000 GG HH 1 0.61400 1.81654 6.34000 LI HH 1 0.58700 1.90555 6.07000 VT HH 1 0.60800 1.85255 6.28000 IV HH 1 0.54500 1.92394 5.65000 KG HH 1 0.43100 2.10658 4.51000 TS HH 0 0.30000 2.31004 3.20000 LM HH 0 0.27600 2.36641 2.96000 VF HH 0 0.29300 2.31576 3.13000 DL HH 0 0.16000 2.54391 1.80000 LA HH 0 0.10300 2.70920 1.23000 FW HH 0 0.08500 2.76700 1.05000 E H H H F S K H D H Q H RL HH 0 0.00000 2.87597 0.00000 NE TT 0 0.10300 1.64334 1.23000 GP TT 0 0.30500 2.16573 3.25000 V - A - L - E S I S P G E G K G N G N S S S DI -S 0 0.03600 2.37970 0.56000 TP G- 0 0.29600 1.67362 3.16000 DD GH 0 0.42900 2.00476 4.49000 LF GH 0 0.22100 2.39895 2.41000 LL HH 0 0.19000 2.46914 2.10000 SD HH 0 0.22400 2.39137 2.44000 TE HH 0 0.31700 2.23635 3.37000 IL HH 0 0.34900 2.22496 3.69000 EK HH 0 0.36300 2.23639 3.83000 HY HH 0 0.35500 2.21355 3.75000 YE HH 1 0.49900 1.99119 5.19000 II HH 1 0.45600 2.07820 4.76000 SD HH 1 0.43500 2.08407 4.55000 SW HH 1 0.62500 1.79565 6.45000 QI HH 1 0.60300 1.84807 6.23000 AL HH 1 0.48200 1.99559 5.02000 IT HT 1 0.57400 1.76028 5.94000 IM HT 1 0.70200 1.43977 7.22000 QQ HB 1 0.75000 1.22679 7.70000 G H V - S - N B P T S T GY B- 0 0.00000 3.02018 0.08000 DP -T 0 0.02900 2.83658 0.49000 LD TT 0 0.21600 2.35815 2.36000 SG TS 0 0.11900 2.60110 1.39000 SS TS 0 0.09500 2.64620 1.15000 GG T- 0 0.00000 2.94232 0.14000 GR G- 0 0.15400 2.14237 1.74000 L G GV GB 0 0.15400 2.42090 1.74000 EA -E 0 0.31900 2.23271 3.39000 PH -E 1 0.49300 1.90892 5.13000 KK EE 1 0.67800 1.64405 6.98000 FV EE 1 0.67500 1.55016 6.95000 NS -E 0 0.22700 1.11458 2.47000 T - R S N S F - G - G - F S I - M - P G E G N G E - H - VD TS 0 0.00000 3.16144 0.00000 DE T- 0 0.04900 2.55357 0.69000 ER S- 0 0.09600 2.32989 1.16000 TF -E 0 0.40200 1.09728 4.22000 AF BE 1 0.52300 1.70584 5.43000 Y - T - G S S - W - GV SE 0 0.00000 3.53374 0.00000 RP -E 0 0.00000 3.02844 0.07000 PW -E 0 0.05100 2.65211 0.71000 QS -- 0 0.15100 2.34411 1.71000 RS TH 0 0.42200 1.97911 4.42000 DA HH 1 0.49300 1.91706 5.13000 GA HH 1 0.70500 1.63411 7.25000 PT HH 1 0.74200 1.59529 7.62000 AA HH 1 0.68600 1.72417 7.06000 LD HH 1 0.69900 1.69838 7.19000 RF HH 1 0.74700 1.56574 7.67000 AV HH 1 0.75600 1.52709 7.76000 TA HH 1 0.72500 1.62951 7.45000 AM HH 1 0.75600 1.57235 7.76000 MT HH 1 0.81700 1.39248 8.37000 IA HH 1 0.77200 1.51241 7.92000 GM HH 1 0.68200 1.70370 7.02000 FA HH 1 0.65900 1.68970 6.79000 GA HH 1 0.77700 1.41279 7.97000 QR HH 1 0.66800 1.49951 6.88000 WI HH 0 0.33200 2.10213 3.52000 LF HH 0 0.29400 2.21765 3.14000 LR HT 1 0.45100 1.98765 4.71000 DP HT 1 0.48200 1.89829 5.02000 N T GY TT 0 0.00500 2.81728 0.25000 YD -- 0 0.23600 2.31560 2.56000 TP HH 0 0.37100 2.21354 3.91000 SQ HH 0 0.41500 2.14413 4.35000 AY HH 1 0.46500 2.04156 4.85000 AA HH 1 0.55700 1.91575 5.77000 T H EE HH 0 0.11900 2.37311 1.39000 IK TH 1 0.46800 1.47476 4.88000 VC HH 1 0.74200 1.36421 7.62000 WI HH 1 0.66200 1.65772 6.82000 PN HH 1 0.58800 1.67685 6.08000 LA HH 1 0.74900 1.15492 7.69000 VA HH 1 0.86700 0.88545 8.87000 RK HH 1 0.68300 1.32737 7.03000 NV HH 1 0.52500 1.69312 5.45000 DS HH 1 0.61800 1.61609 6.38000 LY HH 1 0.73100 1.17824 7.51000 SE HH 1 0.55100 1.63687 5.71000 YF HH 0 0.40500 2.00443 4.25000 VL HH 1 0.52100 1.86853 5.41000 AK HH 1 0.67300 1.61698 6.93000 QN HH 1 0.52200 1.93310 5.42000 YN H- 0 0.37900 2.13279 3.99000 W T NP T- 0 0.16200 2.26952 1.82000 QA SS 1 0.50000 1.93611 5.20000 TN -- 0 0.33100 2.10204 3.51000 GV E- 0 0.18000 2.39629 2.00000 YF E- A - N - Q - S T G T F - S - T S DG -- LE T- 0 0.00000 3.15230 0.00000 WY T- 0 0.02700 2.51726 0.47000 EA S- 0 0.18900 1.90905 2.09000 ET -- V - N E G E S E S E FV HS FS H- 0 0.00000 2.93155 0.00000 TD HS 0 0.21200 2.17330 2.32000 IA HH 1 0.55300 1.79965 5.73000 AD HH 1 0.48400 1.98933 5.04000 VD HH 0 0.39500 2.06607 4.15000 QR HH 1 0.55100 1.50630 5.71000 HL HH 1 0.62900 1.47560 6.49000 RW HH 1 0.50500 1.86919 5.25000 AA HH 1 0.72100 1.41277 7.41000 LA HH 1 0.72500 1.40137 7.45000 VA HH 1 0.46800 1.94893 4.88000 EE HH 1 0.54100 1.77768 5.61000 GM HH 1 0.55700 1.35517 5.77000 SW HH 0 0.28500 2.12945 3.05000 AE HH 0 0.19600 2.39540 2.16000 FT HH 0 0.36800 2.06109 3.88000 AL HH 0 0.21000 2.27180 2.30000 T H A H V T G T S - SG -- 0 0.00000 3.16087 0.00000 CD -- 0 0.03200 2.71997 0.52000 SE HH 0 0.01800 2.94101 0.38000 WE HH 0 0.09900 2.55592 1.19000 CY HH 0 0.28000 1.96154 3.00000 DL HH 0 0.17700 2.41232 1.97000 SR HH 0 0.21400 2.37213 2.34000 QD HH 1 0.46100 1.79784 4.81000 AF HH 1 0.61200 1.75891 6.32000 PE HH 1 0.55000 1.87397 5.70000 QN HH 1 0.62500 1.60989 6.45000 IR HH 1 0.77500 1.26574 7.95000 LA HH 1 0.73100 1.50854 7.51000 CA HH 1 0.63000 1.70089 6.50000 YQ HT 1 0.74000 1.39585 7.60000 LF H- QS GS S G F G W B T - G S S S Y S I B L - A S N E F E D S S - SK -S RK SS SI -- GE -- 0 0.00000 3.13571 0.00000 KA -S 0 0.01400 2.83740 0.34000 DD -S 0 0.19500 2.08712 2.15000 TF T- D - NW HT TD HT LN H- 0 0.00000 2.90386 0.00000 LV H- 0 0.11600 2.35169 1.36000 GA HH 1 0.46500 1.86007 4.85000 SN HH IL HH HG TH TM TH FF -H T H Y H L H L H S - E - R - P S DG -- PK T- EN T- AP -H GA -H CL SH 0 0.00000 3.11268 0.00000 DV -H 0 0.05300 1.78433 0.73000 DQ TH 0 0.35600 2.15147 3.76000 SS TH 1 0.49500 1.99598 5.15000 T T F T Q - P T CI TH SK SH 0 0.10800 1.58605 1.28000 PD HH 1 0.74200 1.58591 7.62000 RS HH 1 0.74100 1.38733 7.61000 AL HH 1 0.57600 1.75369 5.96000 LL HH 1 0.49500 1.98586 5.15000 AS HH 1 0.53700 1.89416 5.57000 NT HH 1 0.43200 2.04744 4.52000 HA HH 0 0.28800 2.31627 3.08000 KD HH 0 0.15500 2.52938 1.75000 ES HH 0 0.14200 2.54179 1.62000 VI HH 0 0.04000 2.80838 0.60000 VV HH 0 0.00100 3.02826 0.21000 DR HH 0 0.02400 2.93617 0.44000 S T F T R T S T I T Y - T G L G N G D T G T LT -H 0 0.00000 2.97073 0.00000 SS -H 0 0.01500 2.77891 0.35000 DQ TH 0 0.13000 2.29668 1.50000 SN TT 1 0.52400 1.77128 5.44000 EH SS AG -T VY -T AG -- VR -- G - R S Y - P T E T DT -T SL -T YG GT YT GT NT G- GY -- 0 0.02600 2.22181 0.46000 NY -- 0 0.30800 1.90647 3.28000 PW -T 0 0.04900 2.59569 0.69000 G T WC BH 0 0.29300 1.28137 3.13000 FN HH 1 0.74800 1.37118 7.68000 LG HH 1 0.86300 1.14841 8.83000 CT HH 1 0.92100 0.80341 9.41000 TV HH 1 0.93500 0.52045 9.55000 LV HH 1 0.85400 0.85362 8.74000 AR HH 1 0.70000 1.40614 7.20000 AQ HT 1 0.71800 1.49027 7.38000 AT HH 1 0.68800 1.64007 7.08000 EM HH 1 0.64700 1.62184 6.67000 QI HH 1 0.83300 1.06485 8.53000 LL HH 1 0.88300 1.06108 9.03000 YQ HH 1 0.78200 1.41637 8.02000 DV HH 1 0.80000 1.33044 8.20000 AA HH 1 0.87600 0.96393 8.96000 LN HH 1 0.84900 1.12470 8.69000 YK HH 1 0.76500 1.42549 7.85000 QI HH 1 0.78900 1.32547 8.09000 W H D H K H Q H G T S E L E E E I E T - D T V T S T L H D H F H F H K H A T L T Y - S T G T A - A - T S G E T E Y E S E S T S T S S S H T H Y H S H SS HS IP H- 0 0.00000 2.99211 0.00000 VN H- 0 0.12700 1.60180 1.47000 SN HH 1 0.61800 1.83187 6.38000 AD HH 1 0.65000 1.78756 6.70000 VY HH 1 0.63200 1.81026 6.52000 KV HH 1 0.70400 1.66931 7.24000 TN HH 1 0.75500 1.56451 7.75000 FA HH 1 0.74200 1.55740 7.62000 AA HH 1 0.71500 1.56518 7.35000 DL HH 1 0.84800 1.19078 8.68000 GD HH 1 0.89500 1.10291 9.15000 FA HH 1 0.86700 1.19959 8.87000 VI HH 1 0.86800 1.10006 8.88000 SS HH 1 0.91500 0.87873 9.35000 IH HH 1 0.93200 0.89232 9.52000 VV HH 1 0.92100 0.99194 9.41000 F H G T R - N S Y T Y T N - ER H- TS H- 0 0.14700 1.94025 1.67000 HY HS 1 0.56200 1.75737 5.82000 AV SB 1 0.68900 1.67828 7.09000 AT -T 1 0.57300 1.89430 5.93000 G T L S G S I S N S P - P - M S N S P - H B D - R H R H S H G H A H D S G S I - W S E S P - SW T- NP TS 0 0.05100 2.33872 0.71000 GG -S 0 0.39300 2.08310 4.13000 SY -- 1 0.48200 1.73726 5.02000 LL -B 1 0.67700 1.16148 6.97000 SV -- 1 0.84000 1.14820 8.60000 EG S- G - QG E- FW E- DP -S 0 0.00200 2.79323 0.22000 KG TS 0 0.22800 1.84056 2.48000 SP TT 1 0.43500 1.87760 4.55000 K T DD T- 0 0.08400 2.34280 1.04000 GW -- 0 0.36700 2.16175 3.87000 DV -- 0 0.23400 2.07955 2.54000 ED E- LI E- Q T D T S - Y T Q T ST ST AN SS RE SB 1 0.46300 1.72052 4.83000 DI S- 1 0.61200 1.75352 6.32000 LA -- 1 0.77400 1.28385 7.94000 TI HH 1 0.84600 1.32544 8.66000 WN HH 1 0.86100 1.29156 8.81000 SW HH 1 0.86200 1.25183 8.82000 YN HH 1 0.87300 1.19896 8.93000 AA HH 1 0.89500 1.09845 9.15000 AA HH 1 0.90500 0.94973 9.25000 LL HH 1 0.88800 1.08026 9.08000 LI HH 1 0.89500 1.13315 9.15000 TY HH 1 0.90300 1.01299 9.23000 AA HH 1 0.84300 1.22272 8.63000 NL HH 1 0.79800 1.41535 8.18000 NA HH 1 0.64800 1.55094 6.68000 RG HT 1 0.46600 1.86562 4.86000 RF HT NV TT SN TT V - V - P - P - S - W - G S E G T G S G A S S - S - V - P - G S T S C - A - A - T - S - A - S - G - T - Y - S - S - V - T - V - T - S - W - P - S - I - V - *