% ALIGN_CLEAN, R.B. Russell, 1995 % Searching for domain descriptors... % 2 domain descriptions read in /disk3/pdb/pdb1fus.ent 1fus { ALL 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 0.00000 1.00000 0.00000 } /disk3/pdb/pdb1brn.ent 1brnl { CHAIN L -0.49722 0.60854 0.61842 -1.46868 0.51964 -0.36193 0.77394 -18.94451 0.69481 0.70617 -0.13626 -27.10451 } % Reading block file... Blocfile read: Length: 135 % Searching for STAMP data... % 268459416 STAMP fields found: T P A G % Block file contains 5 sequences; the alignment length is 135 % Cleaning up allowing continuous segments of 3 or greater... % Cleaning done. % The final alignment length is 130 % The alignment: >1fus (cluster A) sequence >1brnl (cluster B) sequence >space >1fus_dssp (cluster A) secondary structure from DSSP >1brnl_dssp (cluster B) secondary structure from DSSP #T -- '1' = equivalenced residues #P -- averaged Pij #A -- distance between averaged CA atoms in angtroms #G -- Pij' value * X - S - A - T E T E C E G T S T T E N E Y E SV -- 0 0.00000 0.00000 0.00000 AI H- 0 0.00000 0.00000 0.00000 SN H- 0 0.00000 0.00000 0.00000 QT HS 0 0.07400 1.97691 0.94000 VF HH 1 0.64000 1.44971 6.60000 RD HH 1 0.59500 1.63078 6.15000 AG HH 1 0.70900 1.09085 7.29000 AV HH 1 0.56900 1.50003 5.89000 AA HH 1 0.47800 1.70165 4.98000 ND HH 0 0.26900 2.20399 2.89000 AY HH 0 0.22700 2.36830 2.47000 AL HH CQ HH QT HH YY HH YH HS QK HS L - P - D T N T Y E I E T - K H S H E H A H Q H A H L T G T W - V - A G S G K G G T N - L H NA TH DD TH DV -H TA -S AP ST GG TT SK T- 0 0.05100 2.71617 0.71000 SS SE 0 0.16400 2.50309 1.84000 TI -E 0 0.22400 2.21920 2.44000 YG -E 1 0.51400 1.42110 5.34000 PG SE 1 0.68600 1.31316 7.06000 HD EE 1 0.87600 0.64535 8.96000 TI EE 1 0.94800 0.68401 9.68000 YF EE 1 0.92100 0.84102 9.41000 NS -- 1 0.89800 1.01902 9.18000 NN -- 1 0.93300 0.85258 9.53000 YR TT 1 0.92500 0.93436 9.45000 EE TT 1 0.90200 1.08235 9.22000 GG -- 1 0.88400 1.18405 9.04000 FK -- 1 0.71200 1.20335 7.32000 D - FL -S 0 0.38900 1.94878 4.09000 PP S- 0 0.16800 2.39284 1.88000 VG S- 0 0.02000 2.78348 0.40000 K - S T DG -T 0 0.00000 2.81300 0.00000 GR S- 0 0.15300 1.65726 1.73000 PT -- 1 0.74900 0.75482 7.69000 YW EE 1 0.92700 0.86954 9.47000 QR EE 1 0.92700 0.87713 9.47000 EE EE 1 0.94400 0.53806 9.64000 FA EE 1 0.92600 0.71676 9.46000 PD EE 1 0.87900 1.13554 8.99000 I - K - S T G T GI S- VN SS 0 0.13700 2.38440 1.57000 YY -- 0 0.26700 2.11536 2.87000 TT -- 0 0.09700 2.60660 1.17000 GS SS 0 0.08100 2.68775 1.01000 GG SS 0 0.19700 2.29271 2.17000 SF -S 1 0.48600 1.82945 5.06000 PR -- 1 0.55300 1.72337 5.73000 GN -- 1 0.73700 0.89721 7.57000 AS SS 1 0.89500 0.69117 9.15000 DD E- 1 0.88100 1.01798 9.01000 RR EE 1 0.93500 0.73067 9.55000 VI EE 1 0.94400 0.76247 9.64000 VL EE 1 0.94300 0.67194 9.63000 IY EE 1 0.91900 0.85077 9.39000 NS EE 1 0.82700 1.12003 8.47000 TS TT 1 0.62500 1.49888 6.45000 ND TT 0 0.40300 2.06324 4.23000 C - EW -- 0 0.23000 1.23166 2.50000 YL E- 0 0.42400 1.87008 4.44000 AI EE 1 0.57800 1.59229 5.98000 GY EE 1 0.83100 0.87825 8.51000 AK EE 1 0.88300 0.88280 9.03000 IT EE 1 0.75100 1.23729 7.71000 TT ES 1 0.56600 1.75105 5.86000 H S T T G T A - S S GD TS 0 0.00000 3.29486 0.00000 NH TS 0 0.04400 2.67097 0.64000 NY -S 0 0.15100 2.34559 1.71000 FQ -S 1 0.51100 1.49248 5.31000 VT ES 1 0.68600 1.47731 7.06000 G E CF -- 0 0.24900 2.08892 2.69000 ST TE 0 0.36400 2.13743 3.84000 GK TE 0 0.33700 1.97798 3.57000 TI -- 0 0.38800 2.05551 4.08000 *